Tools for MRI mouse brain morphometry

DL+DiReCT - Direct Cortical Thickness Estimation using Deep Learning-based Anatomy Segmentation and Cortex Parcellation

A python module designed to reduce your brain load while accessing FreeSurfer brain surface and morphometry data files of single subjects and groups.

Fluvial Corridor Toolbox QGis Plugin

ITK filters that quantify bone morphometry

Symmetrization of 2D pattern using nonrigid landmark registration

This plugin provides tools for geomorphological analysis in drainage basins.

MorphoHub software modules and its code

implementation of the Bayesian Force Inference technique based on the work of Ishihara and Sugimura

Fluvial Corridor Toolbox Applications

Source code and workflow protocols for SOCR 3D Cell Morphometry Project

Stereological macros for ImageJ

Brain Morphometry Estimation: From Hours to Seconds Using Deep Learning

Cell counter integrated with Grid for manual morphometry

The aVP-Toolbox project proposes an innovative dedicated methodology to allow morphometric MRI analysis of the whole anterior visual pathway of the human brain.

Semi-automated ImageJ macro for cerebellar lobule segmentation and length quantification. Supports boundary detection, Purkinje cell-based mask refinement, and ROI export for downstream analysis.

for measuring curvature along the boundary of an image object

MorphoLogic extracts comprehensive neuronal morphometrics from 2D SWC reconstructions and can perform morphology-aware mapping to project concurrent microscopy signals or (synaptic) puncta onto reconstructed neurons. Outputs include per-cell diagnostic visualizations and per-dataset aggregated CSV tables spanning multilevel summaries.

UNDER CONSTRUCTION: Mouse brain morphometry analysis pipeline for MRI imaging data

Morphometric analysis of cells in microscopy images.