Add stack-lifetime-hazards taxonomy declarations to existing templates

[Copilot]

PR #35 wired up taxonomy assembly in the CLI but three templates (investigate-bug, investigate-security, review-code) listed in stack-lifetime-hazards.applicable_to never declared the taxonomy in their frontmatter, so the H1–H5 hazard class definitions were silently omitted from assembled prompts.

Changes

• Template frontmatter — added taxonomies: [stack-lifetime-hazards] to investigate-bug.md, investigate-security.md, and review-code.md
• manifest.yaml — added matching taxonomies: [stack-lifetime-hazards] entries for all three templates, consistent with the pattern established by audit-traceability

# Before
protocols: [anti-hallucination, self-verification, operational-constraints, root-cause-analysis]
format: investigation-report

# After
protocols: [anti-hallucination, self-verification, operational-constraints, root-cause-analysis]
taxonomies: [stack-lifetime-hazards]
format: investigation-report

tests/validate-manifest.py passes unchanged (it validates protocol sync; taxonomy sync follows the same structural convention).

Original prompt

---

This section details on the original issue you should resolve

<issue_title>Add taxonomy declarations to existing templates</issue_title>
<issue_description>## Summary

PR #35 added taxonomy support to the CLI assembler, but only the new \�udit-traceability\ template declares a \ axonomies\ field. Existing templates that use the \stack-lifetime-hazards\ taxonomy should also declare it so the taxonomy definitions are included in assembled prompts.

What to do

Add \ axonomies: [stack-lifetime-hazards]\ to the frontmatter of templates listed in the taxonomy's \�pplicable_to\ field:

• \ emplates/investigate-bug.md\
• \ emplates/investigate-security.md\
• \ emplates/review-code.md\

Also add corresponding \ axonomies\ entries in \manifest.yaml\ for each template.

Why

Without this, users running \promptkit assemble investigate-bug\ don't get the H1–H5 hazard class definitions in the assembled prompt. The CLI now supports taxonomy assembly (added in PR #35) but these templates predate the feature.

Acceptance criteria

• Three templates updated with \ axonomies\ frontmatter field
• \manifest.yaml\ updated to match
• \ ests/validate-manifest.py\ passes
• Quick smoke test:
  ode -e\ confirms H1_STACK_ADDRESS_ESCAPE appears in assembled \investigate-bug\ output
  </issue_description>

Comments on the Issue (you are @copilot in this section)

• Fixes Add taxonomy declarations to existing templates #39

---

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[Alan-Jowett]

@copilot are these the only missing taxonomies or are others also missing them?

[Copilot]

@copilot are these the only missing taxonomies or are others also missing them?

There are only two taxonomies in the repo:

• specification-drift → applicable_to: [audit-traceability] — already had taxonomies: [specification-drift] declared (it introduced the feature)
• stack-lifetime-hazards → applicable_to: [investigate-bug, investigate-security, review-code] — all three are now covered by this PR

No other templates are missing taxonomy declarations.

[Copilot]

Pull request overview

This PR updates PromptKit’s template declarations so the existing stack-lifetime-hazards taxonomy (H1–H5) is included during CLI prompt assembly for the templates that the taxonomy already declares as applicable.

Changes:

• Added taxonomies: [stack-lifetime-hazards] to the YAML frontmatter of three existing templates.
• Added matching taxonomies: [stack-lifetime-hazards] entries for those templates in manifest.yaml.

Reviewed changes

Copilot reviewed 4 out of 4 changed files in this pull request and generated 1 comment.

File	Description
templates/investigate-bug.md	Declares stack-lifetime-hazards taxonomy in template frontmatter so assembled prompts include H1–H5 definitions.
templates/investigate-security.md	Declares stack-lifetime-hazards taxonomy in template frontmatter for security investigations.
templates/review-code.md	Declares stack-lifetime-hazards taxonomy in template frontmatter for code review prompts.
manifest.yaml	Wires stack-lifetime-hazards into the three templates’ manifest entries so the CLI can resolve and inject the taxonomy section.