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chore: align Bioconda recipe starter #4

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Merged
ehsanestaji merged 1 commit into from
May 18, 2026
Merged

chore: align Bioconda recipe starter #4

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5 changes: 3 additions & 2 deletions packaging/bioconda/build.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,8 @@ cargo-bundle-licenses --format yaml --output THIRDPARTY.yml
cargo install -v --locked --no-track --root "${PREFIX}" --path .
rm -f "${PREFIX}/.crates.toml" "${PREFIX}/.crates2.json"

install -Dm644 schema/fastaguard.schema.json \
mkdir -p "${PREFIX}/share/${PKG_NAME}/schema"
install -m644 schema/fastaguard.schema.json \
"${PREFIX}/share/${PKG_NAME}/schema/fastaguard.schema.json"
install -Dm644 schema/finding-catalog.json \
install -m644 schema/finding-catalog.json \
"${PREFIX}/share/${PKG_NAME}/schema/finding-catalog.json"
4 changes: 0 additions & 4 deletions packaging/bioconda/meta.yaml
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Expand Up @@ -17,10 +17,6 @@ requirements:
- {{ compiler('rust') }}
- {{ compiler('c') }}
- cargo-bundle-licenses
host:
- zlib
run:
- zlib

test:
commands:
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11 changes: 11 additions & 0 deletions tests/python/test_release_metadata.py
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Expand Up @@ -30,6 +30,17 @@ def test_bioconda_recipe_sha256_is_real_hash(self):
self.assertIsNotNone(match, recipe)
self.assertNotIn("REPLACE_WITH_PUBLIC_SOURCE_ARCHIVE_SHA256", recipe)

def test_bioconda_recipe_avoids_unneeded_runtime_zlib(self):
recipe = (ROOT / "packaging" / "bioconda" / "meta.yaml").read_text()

self.assertNotIn(" - zlib", recipe)

def test_bioconda_build_script_uses_portable_install(self):
script = (ROOT / "packaging" / "bioconda" / "build.sh").read_text()

self.assertIn('mkdir -p "${PREFIX}/share/${PKG_NAME}/schema"', script)
self.assertNotIn("install -D", script)


if __name__ == "__main__":
unittest.main()