fix(pip): add read permissions when extracting wheels by thirtyseven · Pull Request #3555 · bazel-contrib/rules_python

thirtyseven · 2026-01-30T19:14:52Z

Fix for wheels like https://files.pythonhosted.org/packages/ad/39/da8b5c0f875ccb1770349caaecd87a253949ccbcdc2c869929919d744551/ag_ui_adk-0.4.2-py3-none-any.whl where the contents do not have the read bit set.

Fixes #3554

gemini-code-assist · 2026-01-30T19:15:04Z

Summary of Changes

Hello @thirtyseven, I'm Gemini Code Assist¹! I'm currently reviewing this pull request and will post my feedback shortly. In the meantime, here's a summary to help you and other reviewers quickly get up to speed!

This pull request resolves a critical issue where some Python wheels, upon extraction, lack the necessary read permissions on their internal files, leading to errors in downstream processes. The change implements a post-extraction step to explicitly set appropriate file permissions (read for files, read and execute for directories) on non-Windows operating systems, thereby ensuring the integrity and usability of the extracted wheel contents.

Highlights

Permission Fix for Extracted Wheels: Addresses an issue where certain Python wheels are extracted without proper read permissions, causing subsequent failures when attempting to access their contents.
Cross-Platform Permission Handling: Introduces a chmod command on Unix-like systems to recursively add read permissions to all extracted files and ensure directories are traversable (execute permission), while skipping this step on Windows.

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Code Review

This pull request adds a step to set read permissions on files extracted from a wheel, which fixes issues with wheels that have incorrect permissions. The change is specific to non-Windows systems. My review suggests two minor improvements for robustness and conciseness: using a more precise comparison to detect the Windows OS, and simplifying the chmod arguments.

python/private/pypi/whl_extract.bzl

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rickeylev

Does this only occur with pipstar enabled? If so, @aignas I'd be +1 on a patch release of this fix.

tests/pypi/whl_permissions/bad_perms_pkg-1.0-py3-none-any.whl

aignas · 2026-01-31T00:37:12Z

Hmm, well this is a bummer. Having to chmod files when extracting is not ideal.

I would say that is a missing feature in bazel's extract function. What is the reason for keeping such incorrect permissions when extracting?

I remember some users mentioned that they have no chmod on their runners, so we should think about using rusts uutils for this. However, what happens for really large wheels?

Should we just disable extracting of the wheel with Starlark for now?

thirtyseven · 2026-01-31T01:34:01Z

This might also be a bug in the release process for this wheel, I can't see a good reason to publish a wheel that is broken like this. If it's not widespread and we can't assume chmod is available, maybe it can just be WAI.

rickeylev · 2026-01-31T16:31:51Z

Lets just make the chmod call optional. If chmod is present, great, it lets us handle this edge case. If not, oh well. i.e. change the logic to ignore errors.

I'd be +1 on more advanced solutions, e.g.

If system chmod is missing, use a tool from a bazel reference
Have a custom extract tool instead of Bazel's extract. (I'd be particularly +1 on this because bazel's extract is known to perform poorly with large archives compared to some other tools)

But, I don't think we need to block a fix that captures the majority case.

Should we just disable extracting of the wheel with Starlark for now?

You mean disable pipstar? I'll defer to you on that, but I'd lean towards no.

aignas · 2026-02-01T08:28:36Z

The extraction of the wheel and the parsing of the METADATA feature flags can be toggled independently.

Regarding a long term fix, I agree, a separate binary that is fast and performant would be better in this case.

…l-contrib#2775) Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.3.0 to 2.4.0. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/urllib3/urllib3/releases">urllib3's releases</a>.</em></p> <blockquote> <h2>2.4.0</h2> <h2>🚀 urllib3 is fundraising for HTTP/2 support</h2> <p><a href="https://sethmlarson.dev/urllib3-is-fundraising-for-http2-support">urllib3 is raising ~$40,000 USD</a> to release HTTP/2 support and ensure long-term sustainable maintenance of the project after a sharp decline in financial support. If your company or organization uses Python and would benefit from HTTP/2 support in Requests, pip, cloud SDKs, and thousands of other projects <a href="https://opencollective.com/urllib3">please consider contributing financially</a> to ensure HTTP/2 support is developed sustainably and maintained for the long-haul.</p> <p>Thank you for your support.</p> <h1>Features</h1> <ul> <li>Applied PEP 639 by specifying the license fields in pyproject.toml. (<a href="https://redirect.github.com/urllib3/urllib3/issues/3522">#3522</a>)</li> <li>Updated exceptions to save and restore more properties during the pickle/serialization process. (<a href="https://redirect.github.com/urllib3/urllib3/issues/3567">#3567</a>)</li> <li>Added <code>verify_flags</code> option to <code>create_urllib3_context</code> with a default of <code>VERIFY_X509_PARTIAL_CHAIN</code> and <code>VERIFY_X509_STRICT</code> for Python 3.13+. (<a href="https://redirect.github.com/urllib3/urllib3/issues/3571">#3571</a>)</li> </ul> <h1>Bugfixes</h1> <ul> <li>Fixed a bug with partial reads of streaming data in Emscripten. (<a href="https://redirect.github.com/urllib3/urllib3/issues/3555">#3555</a>)</li> </ul> <h1>Misc</h1> <ul> <li>Switched to uv for installing development dependecies. (<a href="https://redirect.github.com/urllib3/urllib3/issues/3550">#3550</a>)</li> <li>Removed the <code>multiple.intoto.jsonl</code> asset from GitHub releases. Attestation of release files since v2.3.0 can be found on PyPI. (<a href="https://redirect.github.com/urllib3/urllib3/issues/3566">#3566</a>)</li> </ul> </blockquote> </details> <details> <summary>Changelog</summary> <p><em>Sourced from <a href="https://github.com/urllib3/urllib3/blob/main/CHANGES.rst">urllib3's changelog</a>.</em></p> <blockquote> <h1>2.4.0 (2025-04-10)</h1> <h2>Features</h2> <ul> <li>Applied PEP 639 by specifying the license fields in pyproject.toml. (<code>[bazel-contrib#3522](urllib3/urllib3#3522) <https://github.com/urllib3/urllib3/issues/3522></code>__)</li> <li>Updated exceptions to save and restore more properties during the pickle/serialization process. (<code>[bazel-contrib#3567](urllib3/urllib3#3567) <https://github.com/urllib3/urllib3/issues/3567></code>__)</li> <li>Added <code>verify_flags</code> option to <code>create_urllib3_context</code> with a default of <code>VERIFY_X509_PARTIAL_CHAIN</code> and <code>VERIFY_X509_STRICT</code> for Python 3.13+. (<code>[bazel-contrib#3571](urllib3/urllib3#3571) <https://github.com/urllib3/urllib3/issues/3571></code>__)</li> </ul> <h2>Bugfixes</h2> <ul> <li>Fixed a bug with partial reads of streaming data in Emscripten. (<code>[bazel-contrib#3555](urllib3/urllib3#3555) <https://github.com/urllib3/urllib3/issues/3555></code>__)</li> </ul> <h2>Misc</h2> <ul> <li>Switched to uv for installing development dependecies. (<code>[bazel-contrib#3550](urllib3/urllib3#3550) <https://github.com/urllib3/urllib3/issues/3550></code>__)</li> <li>Removed the <code>multiple.intoto.jsonl</code> asset from GitHub releases. Attestation of release files since v2.3.0 can be found on PyPI. (<code>[bazel-contrib#3566](urllib3/urllib3#3566) <https://github.com/urllib3/urllib3/issues/3566></code>__)</li> </ul> </blockquote> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/urllib3/urllib3/commit/a5ff7ac3bbb8659e2ec3ed41dd43889f06a7d7bc"><code>a5ff7ac</code></a> Release 2.4.0</li> <li><a href="https://github.com/urllib3/urllib3/commit/a135db29f72f828b0ef7314b856d19696a6f48ba"><code>a135db2</code></a> Upgrade memray and coverage to fix macOS tests (<a href="https://redirect.github.com/urllib3/urllib3/issues/3589">#3589</a>)</li> <li><a href="https://github.com/urllib3/urllib3/commit/8f40e71612505a9985b0a58ad793cd84ec97614a"><code>8f40e71</code></a> Upgrade the publishing action to get correct licensing info on PyPI (<a href="https://redirect.github.com/urllib3/urllib3/issues/3585">#3585</a>)</li> <li><a href="https://github.com/urllib3/urllib3/commit/3ff4e49ddf889554cf295b4a2e1189d066b60c71"><code>3ff4e49</code></a> Add a link to the 2024 annual report (<a href="https://redirect.github.com/urllib3/urllib3/issues/3586">#3586</a>)</li> <li><a href="https://github.com/urllib3/urllib3/commit/75709c1dbd6770618f061fd0b8a6950c7741f17b"><code>75709c1</code></a> Set verify flags in <code>create_urllib3_context</code> (<a href="https://redirect.github.com/urllib3/urllib3/issues/3577">#3577</a>)</li> <li><a href="https://github.com/urllib3/urllib3/commit/5c8f82a2f1c1b7a8360f0c84b5a88f25df070811"><code>5c8f82a</code></a> Bump astral-sh/setup-uv from 5.3.0 to 5.4.1 (<a href="https://redirect.github.com/urllib3/urllib3/issues/3580">#3580</a>)</li> <li><a href="https://github.com/urllib3/urllib3/commit/42e90d894b30ef8b897708eb1cdfa24e83cf5067"><code>42e90d8</code></a> Bump actions/setup-python from 5.4.0 to 5.5.0 (<a href="https://redirect.github.com/urllib3/urllib3/issues/3579">#3579</a>)</li> <li><a href="https://github.com/urllib3/urllib3/commit/3e8f2db735dcaced6a3b777aa1966f40c018af7c"><code>3e8f2db</code></a> Stop using Ubuntu 20.04 and 22.04 in CI (<a href="https://redirect.github.com/urllib3/urllib3/issues/3570">#3570</a>)</li> <li><a href="https://github.com/urllib3/urllib3/commit/e29db82a6df5f9a9acbb6997899f93bda79bb61e"><code>e29db82</code></a> Update exceptions to have more of their attributes pickled (<a href="https://redirect.github.com/urllib3/urllib3/issues/3572">#3572</a>)</li> <li><a href="https://github.com/urllib3/urllib3/commit/f8a0c4360ad67aefd79317279ee90c72d5d18697"><code>f8a0c43</code></a> Add PyPy 3.11 to CI</li> <li>Additional commits viewable in <a href="https://github.com/urllib3/urllib3/compare/2.3.0...2.4.0">compare view</a></li> </ul> </details> <br /> [![Dependabot compatibility score](https://dependabot-badges.githubapp.com/badges/compatibility_score?dependency-name=urllib3&package-manager=pip&previous-version=2.3.0&new-version=2.4.0)](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. 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…#2774) Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.3.0 to 2.4.0. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/urllib3/urllib3/releases">urllib3's releases</a>.</em></p> <blockquote> <h2>2.4.0</h2> <h2>🚀 urllib3 is fundraising for HTTP/2 support</h2> <p><a href="https://sethmlarson.dev/urllib3-is-fundraising-for-http2-support">urllib3 is raising ~$40,000 USD</a> to release HTTP/2 support and ensure long-term sustainable maintenance of the project after a sharp decline in financial support. If your company or organization uses Python and would benefit from HTTP/2 support in Requests, pip, cloud SDKs, and thousands of other projects <a href="https://opencollective.com/urllib3">please consider contributing financially</a> to ensure HTTP/2 support is developed sustainably and maintained for the long-haul.</p> <p>Thank you for your support.</p> <h1>Features</h1> <ul> <li>Applied PEP 639 by specifying the license fields in pyproject.toml. (<a href="https://redirect.github.com/urllib3/urllib3/issues/3522">#3522</a>)</li> <li>Updated exceptions to save and restore more properties during the pickle/serialization process. (<a href="https://redirect.github.com/urllib3/urllib3/issues/3567">#3567</a>)</li> <li>Added <code>verify_flags</code> option to <code>create_urllib3_context</code> with a default of <code>VERIFY_X509_PARTIAL_CHAIN</code> and <code>VERIFY_X509_STRICT</code> for Python 3.13+. (<a href="https://redirect.github.com/urllib3/urllib3/issues/3571">#3571</a>)</li> </ul> <h1>Bugfixes</h1> <ul> <li>Fixed a bug with partial reads of streaming data in Emscripten. (<a href="https://redirect.github.com/urllib3/urllib3/issues/3555">#3555</a>)</li> </ul> <h1>Misc</h1> <ul> <li>Switched to uv for installing development dependecies. (<a href="https://redirect.github.com/urllib3/urllib3/issues/3550">#3550</a>)</li> <li>Removed the <code>multiple.intoto.jsonl</code> asset from GitHub releases. Attestation of release files since v2.3.0 can be found on PyPI. (<a href="https://redirect.github.com/urllib3/urllib3/issues/3566">#3566</a>)</li> </ul> </blockquote> </details> <details> <summary>Changelog</summary> <p><em>Sourced from <a href="https://github.com/urllib3/urllib3/blob/main/CHANGES.rst">urllib3's changelog</a>.</em></p> <blockquote> <h1>2.4.0 (2025-04-10)</h1> <h2>Features</h2> <ul> <li>Applied PEP 639 by specifying the license fields in pyproject.toml. (<code>[bazel-contrib#3522](urllib3/urllib3#3522) <https://github.com/urllib3/urllib3/issues/3522></code>__)</li> <li>Updated exceptions to save and restore more properties during the pickle/serialization process. (<code>[bazel-contrib#3567](urllib3/urllib3#3567) <https://github.com/urllib3/urllib3/issues/3567></code>__)</li> <li>Added <code>verify_flags</code> option to <code>create_urllib3_context</code> with a default of <code>VERIFY_X509_PARTIAL_CHAIN</code> and <code>VERIFY_X509_STRICT</code> for Python 3.13+. (<code>[bazel-contrib#3571](urllib3/urllib3#3571) <https://github.com/urllib3/urllib3/issues/3571></code>__)</li> </ul> <h2>Bugfixes</h2> <ul> <li>Fixed a bug with partial reads of streaming data in Emscripten. (<code>[bazel-contrib#3555](urllib3/urllib3#3555) <https://github.com/urllib3/urllib3/issues/3555></code>__)</li> </ul> <h2>Misc</h2> <ul> <li>Switched to uv for installing development dependecies. (<code>[bazel-contrib#3550](urllib3/urllib3#3550) <https://github.com/urllib3/urllib3/issues/3550></code>__)</li> <li>Removed the <code>multiple.intoto.jsonl</code> asset from GitHub releases. Attestation of release files since v2.3.0 can be found on PyPI. (<code>[bazel-contrib#3566](urllib3/urllib3#3566) <https://github.com/urllib3/urllib3/issues/3566></code>__)</li> </ul> </blockquote> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/urllib3/urllib3/commit/a5ff7ac3bbb8659e2ec3ed41dd43889f06a7d7bc"><code>a5ff7ac</code></a> Release 2.4.0</li> <li><a href="https://github.com/urllib3/urllib3/commit/a135db29f72f828b0ef7314b856d19696a6f48ba"><code>a135db2</code></a> Upgrade memray and coverage to fix macOS tests (<a href="https://redirect.github.com/urllib3/urllib3/issues/3589">#3589</a>)</li> <li><a href="https://github.com/urllib3/urllib3/commit/8f40e71612505a9985b0a58ad793cd84ec97614a"><code>8f40e71</code></a> Upgrade the publishing action to get correct licensing info on PyPI (<a href="https://redirect.github.com/urllib3/urllib3/issues/3585">#3585</a>)</li> <li><a href="https://github.com/urllib3/urllib3/commit/3ff4e49ddf889554cf295b4a2e1189d066b60c71"><code>3ff4e49</code></a> Add a link to the 2024 annual report (<a href="https://redirect.github.com/urllib3/urllib3/issues/3586">#3586</a>)</li> <li><a href="https://github.com/urllib3/urllib3/commit/75709c1dbd6770618f061fd0b8a6950c7741f17b"><code>75709c1</code></a> Set verify flags in <code>create_urllib3_context</code> (<a href="https://redirect.github.com/urllib3/urllib3/issues/3577">#3577</a>)</li> <li><a href="https://github.com/urllib3/urllib3/commit/5c8f82a2f1c1b7a8360f0c84b5a88f25df070811"><code>5c8f82a</code></a> Bump astral-sh/setup-uv from 5.3.0 to 5.4.1 (<a href="https://redirect.github.com/urllib3/urllib3/issues/3580">#3580</a>)</li> <li><a href="https://github.com/urllib3/urllib3/commit/42e90d894b30ef8b897708eb1cdfa24e83cf5067"><code>42e90d8</code></a> Bump actions/setup-python from 5.4.0 to 5.5.0 (<a href="https://redirect.github.com/urllib3/urllib3/issues/3579">#3579</a>)</li> <li><a href="https://github.com/urllib3/urllib3/commit/3e8f2db735dcaced6a3b777aa1966f40c018af7c"><code>3e8f2db</code></a> Stop using Ubuntu 20.04 and 22.04 in CI (<a href="https://redirect.github.com/urllib3/urllib3/issues/3570">#3570</a>)</li> <li><a href="https://github.com/urllib3/urllib3/commit/e29db82a6df5f9a9acbb6997899f93bda79bb61e"><code>e29db82</code></a> Update exceptions to have more of their attributes pickled (<a href="https://redirect.github.com/urllib3/urllib3/issues/3572">#3572</a>)</li> <li><a href="https://github.com/urllib3/urllib3/commit/f8a0c4360ad67aefd79317279ee90c72d5d18697"><code>f8a0c43</code></a> Add PyPy 3.11 to CI</li> <li>Additional commits viewable in <a href="https://github.com/urllib3/urllib3/compare/2.3.0...2.4.0">compare view</a></li> </ul> </details> <br /> [![Dependabot compatibility score](https://dependabot-badges.githubapp.com/badges/compatibility_score?dependency-name=urllib3&package-manager=pip&previous-version=2.3.0&new-version=2.4.0)](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. 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Set permissions when extracting wheels

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thirtyseven requested review from aignas, groodt and rickeylev as code owners January 30, 2026 19:14

gemini-code-assist bot reviewed Jan 30, 2026

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thirtyseven and others added 3 commits January 30, 2026 11:19

Update python/private/pypi/whl_extract.bzl

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Update python/private/pypi/whl_extract.bzl

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Add integration test

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rickeylev requested changes Jan 30, 2026

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marksmithson mentioned this pull request Jan 31, 2026

Files in Python whl for ag_ui_adk-0.4.2-py3-none-any.whl do not have read bit set. ag-ui-protocol/ag-ui#1028

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use repo_utils instead of direct rctx.execute

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rickeylev added 2 commits February 1, 2026 11:50

remove tests

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remove defunct repo mention in MODULE.bazel

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rickeylev changed the title ~~pip: Set read permissions when extracting wheels~~ fix(pip): add read permissions when extracting wheels Feb 1, 2026

rickeylev approved these changes Feb 1, 2026

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rickeylev enabled auto-merge February 1, 2026 19:56

rickeylev added this pull request to the merge queue Feb 1, 2026

Merged via the queue into bazel-contrib:main with commit 96a1653 Feb 1, 2026
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aignas mentioned this pull request Feb 2, 2026

Evaluate the best extraction method for repository rules #3562

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aignas mentioned this pull request Feb 5, 2026

Force rctx.{download_and,}extract to create user-readable files bazelbuild/bazel#28531

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fix(pip): add read permissions when extracting wheels#3555

fix(pip): add read permissions when extracting wheels#3555
rickeylev merged 7 commits intobazel-contrib:mainfrom
thirtyseven:main

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thirtyseven commented Jan 30, 2026

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