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Fix cyclic_reses error when doing scaffoldguided.scaffoldguided=True#407

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RuizhiPeng wants to merge 5 commits into
RosettaCommons:mainfrom
RuizhiPeng:main
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Fix cyclic_reses error when doing scaffoldguided.scaffoldguided=True#407
RuizhiPeng wants to merge 5 commits into
RosettaCommons:mainfrom
RuizhiPeng:main

Merge branch 'main' of https://github.com/RuizhiPeng/RFdiffusion

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