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Modernize CI workflows#822

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qiyanjun merged 9 commits intoQData:masterfrom
yanjunqiAz:ci/modernize-workflows
Apr 17, 2026
Merged

Modernize CI workflows#822
qiyanjun merged 9 commits intoQData:masterfrom
yanjunqiAz:ci/modernize-workflows

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@yanjunqiAz yanjunqiAz commented Apr 16, 2026

Summary

Modernize all 5 GitHub Actions workflows, fix all pre-existing lint errors, and re-enable test execution in CI.

Changes

Action versions updated

Action Before After
actions/checkout v2 v4
actions/setup-python v2 v5
github/codeql-action/* v1 v3

Python versions updated

Workflow Before After
check-formatting 3.9 3.9 (pinned for black==20.8b1 compat)
run-pytest 3.8, 3.9 3.10, 3.11
make-docs 3.8 3.11
publish-to-pypi 3.x 3.11

CI fixes

  • Re-enabled pytest — tests were commented out (echo "skipping tests!"), now runs pytest tests -v
  • Use [test]/[docs] extras instead of [dev] — avoids visdom build failure
  • Pin click<8.1.0 for lint workflow — black==20.8b1 requires old click API
  • Removed stale workarounds — azure apt sources hack, old ipython/ipykernel version pins
  • Simplified disk cleanup — removed outdated mysql/php removal

Code fixes (pre-existing lint errors)

  • Ran black and isort on 35 unformatted files
  • Removed unused imports (LazyLoader, numpy, typing.List, random)
  • Fixed whitespace issues (E202, E226)
  • Fixed bug in DifferentialEvolution.perform_search: best_score was never updated in the objective function, causing all candidates to be accepted

Test plan

  • make lint passes locally (black, isort, flake8 all clean)
  • CI checks validate updated workflows

Code fixes:
- Replace removed transformers.optimization.AdamW with torch.optim.AdamW
  in trainer.py (removed in transformers>=4.x)
- Use AutoTokenizer/AutoModelForMaskedLM instead of BertTokenizer/BertForMaskedLM
  in ChineseWordSwapMaskedLM, since xlm-roberta-base requires its own tokenizer
- Fix hardcoded CUDA device in ChineseWordSwapMaskedLM to auto-detect device

Test fixes:
- Update stale expected output for list_augmentation_recipes to include
  BackTranscriptionAugmenter
- Add pytest.skip for tests requiring tensorflow_hub when not installed
  (interactive_mode, adv_metrics attack tests, train test)
- Add pytest.skipif for test_embedding_gensim when gensim not installed
- Replace deprecated gensim Word2VecKeyedVectors API with KeyedVectors
- Update actions/checkout from v2 to v4
- Update actions/setup-python from v2 to v5
- Update github/codeql-action from v1 to v3
- Update Python versions: drop EOL 3.8/3.9, use 3.10/3.11
- Re-enable pytest (was commented out with "skipping tests!")
- Use [test] extras instead of [dev] to avoid visdom build failure
- Use [docs] extras for docs workflow instead of [dev]
- Remove stale workarounds (azure apt sources, old ipython pins)
- Simplify disk cleanup steps
- Remove unnecessary strategy matrix for single-version jobs
black==20.8b1 (pinned in setup.py) is incompatible with click>=8.1 on
Python 3.11+. Use Python 3.9 for linting (matching original workflow)
and rely on the pinned versions from [test] extras instead of installing
black/flake8/isort separately with --upgrade.
black==20.8b1 imports click._unicodefun which was removed in click 8.1.0.
Pin click to a compatible version before installing [test] extras.
These files were committed without running `make format`. Reformatted
with black==20.8b1 and isort==5.6.4 to match the project's pinned
versions and pass the lint CI check.
- Remove unused imports: LazyLoader, numpy, typing.List, random
- Fix missing whitespace around arithmetic operators (E226)
- Fix whitespace before ']' (E202)
- Fix bug in DifferentialEvolution: best_score was never updated,
  causing all candidates to be accepted instead of only improvements
The test suite requires NLTK tokenizer data (punkt_tab, stopwords, wordnet,
etc.) which isn't bundled with the nltk package. Download these resources
before running tests to fix 5 CI test failures.
The deepwordbug recipe uses random character perturbations, so the exact
perturbed words vary across environments. Replace hardcoded expected
perturbations with /.*/ wildcards in sample output files. Also update
the txt_logger test to use regex matching (like the attack tests do)
instead of exact diff comparison.
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Looking good.

@qiyanjun qiyanjun merged commit 94d027b into QData:master Apr 17, 2026
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