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Fix scoring math, overflow bug, CWE mappings, and locale bug#286

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TheAuditorTool wants to merge 2 commits intoOWASP-Benchmark:mainfrom
TheAuditorTool:feat/resolve-all-todos
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Fix scoring math, overflow bug, CWE mappings, and locale bug#286
TheAuditorTool wants to merge 2 commits intoOWASP-Benchmark:mainfrom
TheAuditorTool:feat/resolve-all-todos

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PR: Fix scoring math, overflow bug, CWE mappings, and locale bug

Repo: BenchmarkUtils
Branch: feat/resolve-all-todos
Base: main
Files changed: 9 Java files
Diff: +31 / -33 lines


Summary

Targeted fixes for existing TODO/FIXME items in BenchmarkUtils: a scoring unit mismatch that corrupted overall averages, an integer overflow in anonymous mode, 4 CWE mapping corrections, 1 dead code removal, and a locale bug causing 14 pre-existing test failures on non-US systems.

No generated test case files are modified.


Changes

Scoring unit mismatch (root cause fix)

ScatterVulns.java:341-347 -- Non-commercial tool stats were accumulated in 0-1 scale while commercial tools used 0-100. The overall average mixed both scales, producing corrupt values that flowed into ToolReport triangle indicators.

Fix: multiply non-commercial values by 100 at accumulation, matching the commercial path at lines 410-438. 4 lines changed.

ToolReport.java:166-201 -- Updated 3 stale FIXME comments to document the fix.

Integer overflow fix

BenchmarkScore.java:390-393 -- generator.nextInt() could return Integer.MIN_VALUE, where * -1 overflows back to Integer.MIN_VALUE, producing a negative array index.

Fix: generator.nextInt(files.size()) directly returns a value in [0, bound). 4 lines replaced with 1.

CWE mapping corrections

File Rule Before After Impact
SemgrepReader.java CWE 77 fell through to DONTCARE returns 78 (cmdi) Command Injection findings now scored
SemgrepReader.java CWE 780 fell through to DONTCARE returns 327 (crypto) RSA-without-OAEP findings now scored
SemgrepReader.java CWE 943 fell through to DONTCARE returns 89 (sqli) Data Query Injection findings now scored
KlocworkCSVReader.java SV.DATA.DB fell through to DONTCARE returns SQL_INJECTION SQL Injection findings now scored

SemgrepReader CWE 1336 (Template Engine Injection): TODO removed, comment clarified -- no Benchmark category exists yet.

FindbugsReader PADORA: FIXME comment clarified (CWE 327 mapping is correct for the Benchmark crypto category).

Dead code removal

JuliaReader.java:34-38 -- Removed unused prefixOfTest field. Was never referenced by any method; testNumber() inherited from Reader handles test case number extraction. Also removed the now-unused BenchmarkScore import. (This field caused 155 cascading test failures when made dynamic, because BenchmarkScore.TESTSUITENAME is null during test init.)

FaastReader dynamic test suite name

FaastReader.java:89-90 -- Hardcoded "benchmark/" replaced with BenchmarkScore.TESTSUITENAME.simpleName().toLowerCase() + "/" so non-Benchmark test suites parse correctly.

Locale bug fix (pre-existing, 14 test failures)

Formats.java:24-27 -- DecimalFormat instances created without locale, producing comma decimals on non-US systems. Added DecimalFormatSymbols.getInstance(Locale.US) to all three formatters. Fixes 14 pre-existing test failures on upstream main.


Test results

Upstream main: 257 tests, 14 failures, 155 errors. After this PR: 257 tests, 0 failures, 0 errors.

@davewichers
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@darkspirit510 - Can you review this and add test cases to detect these failures/bugs, and then verify that these tests now pass with these changes?

@TheAuditorTool - When you detect bugs, can you first 1) create test cases to detect/fail for each bug, and then 2) verify they now pass with the fixes you've made? If you can update all the existing PRs to add failing test cases that now pass, that would be great.

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@darkspirit510 - Can you review this and add test cases to detect these failures/bugs, and then verify that these tests now pass with these changes?

@TheAuditorTool - When you detect bugs, can you first 1) create test cases to detect/fail for each bug, and then 2) verify they now pass with the fixes you've made? If you can update all the existing PRs to add failing test cases that now pass, that would be great.

Fixing them all now.

@TheAuditorTool TheAuditorTool force-pushed the feat/resolve-all-todos branch from f34b19d to b8c070e Compare April 13, 2026 17:07
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@davewichers Done. I've added failing-first test cases across all testable PRs in BenchmarkUtils, BenchmarkJava, and Generator. Each test is designed to fail on main (proving the bug
exists) and pass with the fix applied.

This PR (#286): 10 new tests covering the locale bug (asserts dot-decimal under Locale.GERMANY), CWE mapping fixes (direct translate() tests + end-to-end parse tests for CWE-77, 780,
943), Klocwork SV.DATA.DB mapping, and the integer overflow arithmetic. Full suite: 267 tests, 0 failures.

Other PRs updated with the same approach:

The remaining PRs (shell scripts, Dockerfiles, JS compatibility) are infrastructure changes where unit tests aren't applicable — those were verified manually.

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Most code changes look good to me. Some I don't understand. And I'm not sure if it is a good idea to create test files "hoping" to match the result files of the real product. But I guess beggers can't be choosers.

return 327; // weak encryption - cipher with no integrity
case "PADORA":
return 327; // padding oracle -- FIXME: probably wrong
return 327; // padding oracle maps to crypto weakness category in Benchmark
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This comment "fix" is wrong. How can the AI be certain if the mapping is wrong? Just changing the comment does not help.

case "RLK.OUT": // Output stream not closed on exit

case "SV.DATA.DB": // Data Injection - what does that mean? TODO
case "SV.DATA.DB":
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Not sure if this is correct, but it sounds right. Do we have a test file to verify?

case 77: // Improper Neutralization of Special Elements used in a Command ('Command
// Injection') - TODO: Map to Command Injection?
case 77:
return 78; // Command Injection parent CWE maps to Benchmark cmdi category
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Please use CweNumber for all new commits.

String precisionBonus = "    ";
// r.precision has range 0-1, but currentCategoryResults.precision is 1 to 100.
// FIXME: Fix precision calculations so they are the same units
// r.precision is 0-1, currentCategoryResults.precision is 0-100 (both now
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I guess this comment can be removed since both use the same unit.

@BeforeEach
void setUp() {
resultFile = TestHelper.resultFileOf("testfiles/Benchmark_Klocwork.csv");
resultFileSvDataDb =
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Since this does not add a whole new flow but just a mapping, please merge both tests and test files.

resultFileV121 =
TestHelper.resultFileWithoutLineBreaksOf(
"testfiles/Benchmark_semgrep-v0.121.0.json");
resultFileCweMappings =
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Since this does not add a whole new flow but just a mapping, please merge both tests and test files.

expectUsageMessage();
}

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Do I miss something or are you testing Java? Why should we do this?

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@darkspirit510 @davewichers Thank you for the review. Addressing all items below, but first — an honest note.

When Dave asked for test cases across all PRs, I rushed them out without proper review. The result was tests that verified Java behavior instead of our code, fabricated fixture files in separate test classes instead of extending the existing ones, and a comment change on PADORA that claimed certainty I didn't have. That's on me, and I appreciate you taking the time to catch it all.

During the rework I also found a critical bug in my own CWE mapping changes that the rushed tests would never have caught, details below. That alone justified the closer look you pushed for.

Review items resolved:

  1. SemgrepReader CweNumber constants — Replaced raw int returns with CweNumber.COMMAND_INJECTION, CweNumber.WEAK_CRYPTO_ALGO, CweNumber.SQL_INJECTION as requested.
  2. FindbugsReader PADORA — You were right, we had no basis for that confidence. Reverted to the original FIXME: probably wrong comment. Zero diff vs main on this file now.
  3. ToolReport FIXME comments — Removed entirely rather than rewording.
  4. BenchmarkScoreTest overflow tests — Removed. Those tested Java's Math.abs and SecureRandom, not our code.
  5. KlocworkCSVReaderTest — Merged SV.DATA.DB into the existing Benchmark_Klocwork.csv fixture and added the assertion to the existing readerHandlesGivenResultFile() test. Deleted the separate test file.
  6. SemgrepReaderTest — Merged CWE-77/780/943 entries into the existing Benchmark_semgrep-v0.121.0.json fixture (matching its array-style format) and added assertions to the existing readerHandlesGivenResultFileInV121() test. Kept the direct translate() unit tests. Deleted the separate test file.

Critical bug fixed (found during review rework):

The original CWE mapping changes placed return statements inside the switch fall-through chain of "don't care" cases. In Java, preceding cases without break fall through into the return, causing silent mis-categorization. For example, CWE-778 (Insufficient Logging) would have been mapped to WEAK_CRYPTO_ALGO, and CWE-502 (Deserialization) would have as well. This affected ~80 CWEs.

Fix: Moved cases 77, 780, 943 out of the don't-care block and into the explicit-return section (77 grouped with 78, 943 with 89, 780 with 326/327/329/696). Added translateDontCareCwesReturnAsIs() test to guard against this regression.

What we cannot verify and want to be transparent about:

  • The test fixtures are synthetic. They follow the exact structure of the existing accepted fixtures, but we don't have real Semgrep/Klocwork output files to validate against.
  • The locale fix (Formats.java) was not tested on an actual non-US locale system.
  • The ScatterVulns scoring fix was not integration-tested with real multi-tool data.

Full suite: 269 tests, 0 failures. Spotless passes.

…switch fall-through bug

Resolves all 7 review items from @darkspirit510:
- SemgrepReader: use CweNumber constants instead of raw ints
- FindbugsReader: revert PADORA comment to original FIXME
- ToolReport: remove stale FIXME comments entirely
- BenchmarkScoreTest: remove overflow tests that tested Java, not our code
- KlocworkCSVReaderTest: merge SV.DATA.DB into existing fixture and test
- SemgrepReaderTest: merge CWE mapping entries into existing v0.121.0 fixture

Critical fix: CWE mapping returns were placed inside the switch
fall-through chain, causing ~80 "don't care" CWEs to be silently
mis-categorized. Moved cases 77, 780, 943 to the explicit-return
section. Added translateDontCareCwesReturnAsIs() regression guard.

269 tests, 0 failures. Spotless passes.
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When Dave asked for test cases across all PRs, I rushed them out without proper review. The result was tests that verified Java behavior instead of our code, fabricated fixture files in separate test classes instead of extending the existing ones, and a comment change on PADORA that claimed certainty I didn't have. That's on me, and I appreciate you taking the time to catch it all.

@TheAuditorTool I'm happy you understand and reworked, your commits look good :-)

During the rework I also found a critical bug in my own CWE mapping changes that the rushed tests would never have caught, details below.

Good to know that you found and fixed this, too.

The locale fix (Formats.java) was not tested on an actual non-US locale system.

My Mac is English, but using German formats and the tests worked fine.

@davewichers the only thing I'm not sure about is that some of the FIXME comments were changed without actually changing code and I'm not certain if this is right. Beside of that, this PR looks good to me.

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@TheAuditorTool - Its minor but do you want to look at the FIXME comments that were changed, but nothing related to them changed, and revert those changes?

@TheAuditorTool
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@davewichers @darkspirit510
I have to admit I dont fully understand what you are asking of me :(
I reverted/corrected it in d486be9
So the fixme total is now:
FindbugsReader — zero diff. Already reverted. Clean.
ToolReport.java — 3 FIXME comments removed. But this one is arguably valid to remove because the ScatterVulns fix in this same PR does fix the unit mismatch those FIXMEs were about.
The comments said "Fix precision/fscore/truePositiveRate calculations so they are the same units" and the ScatterVulns change makes them the same units.

Those are legitimate changes or do you want those reverted aswell?
Please advice :)

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