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A Python package for efficiently aligning organismal taxonomic hierarchies using the Global Names Verifier

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Imageomics/TaxonoPy

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TaxonoPy: Reproducible, Traceable, and Scalable Biological Taxonomy Alignment

TaxonoPy (taxon-o-pie) is a command-line tool for harmonizing large biodiversity datasets into a consistent taxonomy ready for AI applications. Built on the Global Names Verifier (GNVerifier), it provides complete provenance tracking, flexible resolution strategies, and batch processing of 100M+ records to address challenges in reproducibility and scale in massive multi-source taxonomy alignment.

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See https://imageomics.github.io/TaxonoPy for documentation on installation, usage, and more.

Development

See the Wiki Development Page for development instructions.

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A Python package for efficiently aligning organismal taxonomic hierarchies using the Global Names Verifier

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