SmartEM integration for the EPU context#772

Merged

d-j-hatton merged 13 commits intomainfrom

epu-smartem-integration

Apr 1, 2026

Commits on Mar 27, 2026

perform basic smartem atlas registration for epu acquisition
d-j-hatton
committed

Commits on Mar 30, 2026

add smartem UUID fields to database to synchronise with smartem
d-j-hatton
committed
rather than register a smartem atlas when the atlas is seen push this to the data collection group registration where a smartem grid will also be registered
d-j-hatton
committed
smartem hooks for data collection group and movie registration (which makes a smartem micrograph, ignoring metadata for now)
d-j-hatton
committed
add smartem grid uuid to data collection group row if present in the message
d-j-hatton
committed
add optional smartem registration to grid square and foil hole registrations in murfey
d-j-hatton
committed
add smartem stuff to particle picking feedback message
d-j-hatton
committed
fix test to account for new API parameters
d-j-hatton
committed
add feedback entry points for SPA motion correction and ctf estimation to do smartem registration
d-j-hatton
committed
register the smartem atlas at the correct point, when all the grid square positions have been registered
d-j-hatton
committed

Commits on Mar 31, 2026

Commits on Apr 1, 2026

add storage folder to atlas so that montages can be made in the correct location later
d-j-hatton
committed