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CompOmics / DeepLC Public

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Feature/progress and threads#96

Merged

RalfG merged 15 commits intorelease/4.0CompOmics/DeepLC:release/4.0from

feature/progress-and-threadsCompOmics/DeepLC:feature/progress-and-threadsCopy head branch name to clipboard

Mar 16, 2026

Conversation Commits15 (15)Checks Files changed

Merged

Feature/progress and threads#96
RalfG merged 15 commits intorelease/4.0from
feature/progress-and-threads

Commits

Commits on Mar 12, 2026

Remove calibration parameter from finetune_and_predict
RalfG
committed
Simplify and improve progress bar
RalfG
committed
Remove partial freeze support, as this mostly reduces finetuning performance
RalfG
committed
Add plain calibration function to core to avoid code duplication and add user friendly entry point for calibration of PSMs
RalfG
committed
Fix missing encoding for terminal modifications
RalfG
committed
Update function order in _features; add todo for fixed modifications
RalfG
committed

Commits on Mar 13, 2026

Improve linear calibration; remove 'simplified' option in spline calibration.
RalfG
committed
Improve logging and progress bar
RalfG
committed
Change to SplineCalibration by default after finetuning
RalfG
committed
Hard fix promote buffers to parameters in model files, avoiding fix on every model load
RalfG
committed

Commits on Mar 16, 2026

Improve piece-wise linear calibration:
RalfG
committed
Add show_progress parameter to predict
RalfG
committed
Update tests
RalfG
committed
Packaging: Update manifest file
RalfG
committed
Update changelog for alpha.1 release; fix linting
RalfG
committed

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