Initial work for new 4.0 API#90

Merged

RalfG merged 45 commits intorelease/4.0from

feature/new-api

Mar 3, 2026

Commits on Mar 14, 2025

First output of deeplc as onnx and first notebook
Alirezak2n
committed

Commits on Mar 24, 2025

Update the ONNX model
Alirezak2n
committed

Commits on Mar 27, 2025

Commits on Apr 2, 2025

Add calibration test
Alirezak2n
committed

Commits on Jun 5, 2025

Generate features as part of dataloader for optimized multiprocessing and batching
RalfG
committed

Commits on Jun 6, 2025

Simplify predict function and only predict unique peptidoforms:
RalfG
committed

Commits on Sep 23, 2025

Fully vectorize linear calibration
RalfG
committed

Commits on Dec 10, 2025

Commits on Jan 9, 2026

default patience to at least 10, change data import
ArthurDeclercq
committed

Commits on Jan 13, 2026

Commits on Feb 19, 2026