[Feature] : Add REST API endpoints for access through AI (WIP !)

migrations/versions/d4f8e2a1b3c7_.py

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+"""Add api_token table for scoped API token auth.
+
+Revision ID: d4f8e2a1b3c7
+Revises: c8f3a2b1d4e5
+Create Date: 2026-06-11 03:00:00.000000
+
+"""
+import sqlalchemy as sa
+from alembic import op
+
+# revision identifiers, used by Alembic.
+revision = 'd4f8e2a1b3c7'
+down_revision = 'c8f3a2b1d4e5'
+branch_labels = None
+depends_on = None
+
+
+def upgrade():
+    """Apply the migration."""
+    op.add_column('user', sa.Column('github_login', sa.String(length=255), nullable=True))
+    op.create_table(
+        'api_token',
+        sa.Column('id', sa.Integer(), nullable=False, autoincrement=True),
+        sa.Column('user_id', sa.Integer(), nullable=False),
+        sa.Column('token_name', sa.String(length=50), nullable=False),
+        sa.Column('token_hash', sa.String(length=255), nullable=False),
+        sa.Column('token_prefix', sa.String(length=16), nullable=False),
+        sa.Column('scopes_json', sa.Text(), nullable=False),
+        sa.Column('created_at', sa.DateTime(timezone=True), nullable=False),
+        sa.Column('expires_at', sa.DateTime(timezone=True), nullable=False),
+        sa.Column('revoked_at', sa.DateTime(timezone=True), nullable=True),
+        sa.PrimaryKeyConstraint('id'),
+        sa.ForeignKeyConstraint(['user_id'], ['user.id'], onupdate='CASCADE', ondelete='CASCADE'),
+        sa.UniqueConstraint('user_id', 'token_name', name='uq_user_token_name'),
+        mysql_engine='InnoDB'
+    )
+    op.create_index('ix_api_token_token_prefix', 'api_token', ['token_prefix'])
+
+
+def downgrade():
+    """Revert the migration."""
+    op.drop_index('ix_api_token_token_prefix', table_name='api_token')
+    op.drop_table('api_token')
+    op.drop_column('user', 'github_login')

mod_api/__init__.py

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+"""
+mod_api: JSON REST API blueprint for the CCExtractor CI platform.
+
+Registered at /api/v1. All endpoints return structured JSON, use scoped
+Bearer token auth, and enforce per-client rate limiting.
+"""
+
+from flask import Blueprint
+
+mod_api = Blueprint('api', __name__)
+
+# Middleware (registers before_request hooks and error handlers)
+from mod_api.middleware import auth  # noqa: E402, F401
+from mod_api.middleware import error_handler  # noqa: E402, F401
+from mod_api.middleware import rate_limit  # noqa: E402, F401
+from mod_api.middleware import security  # noqa: E402, F401
+# Route modules (registers endpoint functions on the blueprint)
+from mod_api.routes import auth as auth_routes  # noqa: E402, F401
+from mod_api.routes import errors_logs  # noqa: E402, F401
+from mod_api.routes import results  # noqa: E402, F401
+from mod_api.routes import runs  # noqa: E402, F401
+from mod_api.routes import samples  # noqa: E402, F401
+from mod_api.routes import system  # noqa: E402, F401

mod_api/middleware/__init__.py

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+"""mod_api.middleware: auth, rate limiting, validation, and error handling."""

mod_api/middleware/auth.py

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+"""
+Bearer token authentication and scope/role enforcement for API routes.
+
+Runs as a before_request hook on the api blueprint. Public endpoints
+(token creation, health check) are exempted. On success, the authenticated
+user and token are stored in flask.g for downstream handlers.
+
+HTTP semantics:
+    401 = token missing, expired, revoked, or invalid
+    403 = valid token but insufficient scope or role
+"""
+
+import functools
+from typing import List
+
+from flask import g, request
+
+from mod_api import mod_api
+from mod_api.middleware.error_handler import make_error_response
+from mod_api.models.api_token import ApiToken
+
+_AUTH_FAILED_MSG = 'Bearer token is missing, expired, or invalid.'
+
+# These endpoints bypass auth entirely.
+_PUBLIC_ENDPOINTS = frozenset([
+    'api.create_token',       # POST /auth/tokens (uses email/password body)
+    'api.system_health',      # GET /system/health (uptime monitoring)
+])
+
+
+def _unauthorized():
+    """Shorthand for a 401 response with the standard auth failure message."""
+    from mod_api.middleware.rate_limit import check_rate_limit
+    rate_limit_resp = check_rate_limit()
+    if rate_limit_resp:
+        return rate_limit_resp
+
+    return make_error_response(
+        'unauthorized', _AUTH_FAILED_MSG, http_status=401)
+
+
+@mod_api.before_request
+def authenticate_request():
+    """Validate Bearer token and attach user context to the request."""
+    if request.endpoint in _PUBLIC_ENDPOINTS:
+        g.api_user = None
+        g.api_token = None
+        return
+
+    auth_header = request.headers.get('Authorization', '')
+    if not auth_header:
+        return _unauthorized()
+
+    parts = auth_header.split(' ', 1)
+    if len(parts) != 2 or parts[0] != 'Bearer':
+        return _unauthorized()
+
+    token_value = parts[1].strip()
+    if not token_value or not token_value.startswith('spci_'):
+        return _unauthorized()
+
+    # Look up by prefix, then verify the full hash against each candidate.
+    prefix = ApiToken.extract_prefix(token_value)
+    candidates = ApiToken.query.filter_by(token_prefix=prefix).all()
+
+    if not candidates:
+        return _unauthorized()
+
+    matched_token = None
+    for candidate in candidates:
+        if ApiToken.verify_token(token_value, candidate.token_hash):
+            matched_token = candidate
+            break
+
+    if matched_token is None:
+        return _unauthorized()
+
+    if not matched_token.is_valid:
+        return _unauthorized()
+
+    g.api_token = matched_token
+    g.api_user = matched_token.user
+
+
+def require_scope(*scopes: str):
+    """Reject the request if the token lacks any of the ``scopes``."""
+    def decorator(f):
+        @functools.wraps(f)
+        def decorated_function(*args, **kwargs):
+            token = getattr(g, 'api_token', None)
+            if token is None:
+                return _unauthorized()
+
+            missing_scopes = [s for s in scopes if not token.has_scope(s)]
+            if missing_scopes:
+                return make_error_response(
+                    'forbidden',
+                    'Token lacks the required scopes for this operation.',
+                    details={
+                        'required_scopes': list(scopes),
+                        'missing_scopes': missing_scopes,
+                        'token_scopes': token.scopes,
+                    },
+                    http_status=403,
+                )
+            return f(*args, **kwargs)
+        return decorated_function
+    return decorator
+
+
+def require_roles(roles: List[str]):
+    """Reject the request if the user's role is not in ``roles``."""
+    def decorator(f):
+        @functools.wraps(f)
+        def decorated_function(*args, **kwargs):
+            user = getattr(g, 'api_user', None)
+            if user is None:
+                return _unauthorized()
+            if user.role.value not in roles:
+                return make_error_response(
+                    'forbidden',
+                    'Your role does not have permission for this operation.',
+                    details={
+                        'required_roles': roles,
+                        'user_role': user.role.value,
+                    },
+                    http_status=403,
+                )
+            return f(*args, **kwargs)
+        return decorated_function
+    return decorator

mod_api/middleware/error_handler.py

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+"""Structured JSON error responses for API routes."""
+
+from flask import jsonify, request
+from marshmallow import ValidationError as MarshmallowValidationError
+from sqlalchemy.exc import SQLAlchemyError
+
+from mod_api import mod_api
+
+_API_PREFIX = '/api/v1'
+
+
+def make_error_response(code, message, details=None, http_status=400):
+    """Build a JSON error response conforming to the ErrorResponse schema."""
+    body = {
+        'code': code,
+        'message': str(message)[:500],
+        'details': details if details is not None else {},
+    }
+    response = jsonify(body)
+    response.status_code = http_status
+    return response
+
+
+@mod_api.errorhandler(400)
+def handle_400(error):
+    """Bad request."""
+    return make_error_response(
+        'validation_error',
+        getattr(error, 'description', 'Bad request.'),
+        http_status=400,
+    )
+
+
+@mod_api.errorhandler(401)
+def handle_401(error):
+    """Unauthorized."""
+    return make_error_response(
+        'unauthorized',
+        'Bearer token is missing, expired, or invalid.',
+        http_status=401,
+    )
+
+
+@mod_api.errorhandler(403)
+def handle_403(error):
+    """Forbidden."""
+    return make_error_response(
+        'forbidden',
+        'Token does not have the required scope for this operation.',
+        http_status=403,
+    )
+
+
+def _is_api_request():
+    return request.path.startswith('/api/')
+
+
+@mod_api.app_errorhandler(404)
+def handle_404(error):
+    """Not found."""
+    if _is_api_request():
+        return make_error_response(
+            'not_found',
+            getattr(error, 'description', 'Resource not found.'),
+            http_status=404,
+        )
+    from run import not_found
+    return not_found(error)
+
+
+@mod_api.app_errorhandler(405)
+def handle_405(error):
+    """Handle method-not-allowed errors for API routes."""
+    if _is_api_request():
+        return make_error_response(
+            'method_not_allowed',
+            'Method not allowed.',
+            http_status=405,
+        )
+    return "Method not allowed", 405
+
+
+@mod_api.errorhandler(422)
+def handle_422(error):
+    """Unprocessable entity."""
+    return make_error_response(
+        'unprocessable',
+        getattr(
+            error,
+            'description',
+            'Request is valid JSON but semantically invalid.'),
+        http_status=422,
+    )
+
+
+@mod_api.errorhandler(429)
+def handle_429(error):
+    """Rate limited."""
+    return make_error_response(
+        'rate_limited',
+        'Rate limit exceeded.',
+        details={'retry_after': 30, 'limit': 120, 'window': '60s'},
+        http_status=429,
+    )
+
+
+@mod_api.errorhandler(500)
+def handle_500(error):
+    """Handle unexpected server errors for API routes."""
+    return make_error_response(
+        'internal_error',
+        'An unexpected error occurred.',
+        http_status=500,
+    )
+
+
+@mod_api.errorhandler(MarshmallowValidationError)
+def handle_marshmallow_validation_error(error):
+    """Catch schema validation failures and return them as 400."""
+    return make_error_response(
+        'validation_error',
+        'Request failed schema validation.',
+        details={'fields': error.messages},
+        http_status=400,
+    )
+
+
+@mod_api.errorhandler(SQLAlchemyError)
+def handle_sqlalchemy_error(error):
+    """Log database errors."""
+    from flask import g
+    log = getattr(g, 'log', None)
+    if log:
+        log.error(f'Database error in API: {error}')
+    return make_error_response(
+        'internal_error',
+        'An unexpected database error occurred.',
+        http_status=500,
+    )