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@BirolLab

Birol Lab

Bioinformatics Technology Lab

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  1. ntRoot ntRoot Public

    🌳 Scalable ancestry from genomic data

    Python 12

  2. ntSynt ntSynt Public

    Detecting multi-genome synteny using minimizer graph mapping

    Python 105 2

  3. goldrush goldrush Public

    Linear-time de novo Long Read Assembler

    C++ 41 2

  4. ntEdit ntEdit Public

    ✏️ Genome assembly polishing & SNV detection

    C++ 73 10

  5. AMPlify AMPlify Public

    Attentive deep learning model for antimicrobial peptide prediction

    Python 62 14

  6. NanoSim NanoSim Public

    Nanopore sequence read simulator

    Python 298 63

Repositories

Showing 10 of 92 repositories
  • btl Public

    🔬 Bioinformatics Technology Lab, Genome Sciences Centre

    BirolLab/btl’s past year of commit activity
    HTML 2 3 4 0 Updated Apr 30, 2026
  • AIEdit Public

    Machine learning on spaced seed hit patterns for assembly polishing

    BirolLab/AIEdit’s past year of commit activity
    C++ 0 GPL-3.0 0 0 0 Updated Apr 30, 2026
  • btllib Public

    📚Bioinformatics Technology Lab common code library

    BirolLab/btllib’s past year of commit activity
    C++ 29 7 25 (1 issue needs help) 8 Updated Apr 30, 2026
  • abyss Public

    🔬 Assemble large genomes using short reads

    BirolLab/abyss’s past year of commit activity
    C++ 328 112 5 (1 issue needs help) 0 Updated Apr 30, 2026
  • ntSynt Public

    Detecting multi-genome synteny using minimizer graph mapping

    BirolLab/ntSynt’s past year of commit activity
    Python 105 GPL-3.0 2 0 0 Updated Apr 27, 2026
  • AMPlify Public

    Attentive deep learning model for antimicrobial peptide prediction

    BirolLab/AMPlify’s past year of commit activity
    Python 62 14 4 (1 issue needs help) 0 Updated Apr 23, 2026
  • ntRoot Public

    🌳 Scalable ancestry from genomic data

    BirolLab/ntRoot’s past year of commit activity
    Python 12 GPL-3.0 0 1 0 Updated Apr 20, 2026
  • ntSynt-viz Public

    Multi-genome synteny block visualization tool

    BirolLab/ntSynt-viz’s past year of commit activity
    Python 57 GPL-3.0 4 0 0 Updated Apr 16, 2026
  • triAMPh Public

    TaRget Identification of AntiMicrobial Peptides with Heterogeneous graph attention networks

    BirolLab/triAMPh’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Apr 15, 2026
  • ntHash Public

    Fast hash function for DNA/RNA sequences

    BirolLab/ntHash’s past year of commit activity
    C++ 107 MIT 15 2 3 Updated Apr 2, 2026
View all repositories

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