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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 30 19

  2. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 28 10

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 17 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 14 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 12 3

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 10 4

Repositories

Showing 10 of 579 repositories
  • analysis-pipeline-utils Public

    Utilities to facilitate writing scientific analysis pipelines to run in Code Ocean, in conjunction with S3 and DocumentDB storage

    AllenNeuralDynamics/analysis-pipeline-utils’s past year of commit activity
    Python 0 MIT 0 7 1 Updated Mar 5, 2026
  • aind-fip-dff Public

    This capsule takes an input raw NWB file of fiber data and creates processed DFF traces

    AllenNeuralDynamics/aind-fip-dff’s past year of commit activity
    Python 0 MIT 0 6 4 Updated Mar 5, 2026
  • aind-metadata-upgrader Public

    Upgrade JSON metadata from old versions of aind-data-schema

    AllenNeuralDynamics/aind-metadata-upgrader’s past year of commit activity
    Python 1 MIT 1 4 2 Updated Mar 5, 2026
  • aind-ophys-nwb Public

    Write NWB files for data generated with two-photon ophys pipelines (currently multiplane only)

    AllenNeuralDynamics/aind-ophys-nwb’s past year of commit activity
    Jupyter Notebook 1 MIT 0 8 2 Updated Mar 5, 2026
  • aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    AllenNeuralDynamics/aind-data-schema’s past year of commit activity
    Python 30 MIT 19 45 7 Updated Mar 5, 2026
  • posetail Public
    AllenNeuralDynamics/posetail’s past year of commit activity
    Python 1 BSD-3-Clause 0 0 0 Updated Mar 5, 2026
  • aind-video-utils Public

    Utilities to work with video files

    AllenNeuralDynamics/aind-video-utils’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Mar 5, 2026
  • segmentation-skeleton-metrics Public

    A Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.

    AllenNeuralDynamics/segmentation-skeleton-metrics’s past year of commit activity
    Python 9 MIT 0 0 0 Updated Mar 5, 2026
  • nmcp-snapshot-capsule Public

    Generate snapshots of published reconstructions and publish to S3

    AllenNeuralDynamics/nmcp-snapshot-capsule’s past year of commit activity
    Dockerfile 0 0 0 1 Updated Mar 5, 2026
  • Aind.Behavior.DynamicForaging Public

    A repository for the Dynamic Foraging task.

    AllenNeuralDynamics/Aind.Behavior.DynamicForaging’s past year of commit activity
    C# 0 MIT 0 7 3 Updated Mar 5, 2026