From f80243526e98fb3bc4167b4e772c0779b90201cb Mon Sep 17 00:00:00 2001 From: Andrew D Smith Date: Tue, 19 May 2026 11:57:36 -0700 Subject: [PATCH 1/2] Configuration/adapter_list.txt: added newline to end of file --- Configuration/adapter_list.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Configuration/adapter_list.txt b/Configuration/adapter_list.txt index 236dca8..2607ec1 100644 --- a/Configuration/adapter_list.txt +++ b/Configuration/adapter_list.txt @@ -24,4 +24,4 @@ Illumina Small RNA 3' Adapter TGGAATTCTCGG Illumina Small RNA 5' Adapter GATCGTCGGACT Nextera Transposase Sequence CTGTCTCTTATA PolyA AAAAAAAAAAAA -PolyG GGGGGGGGGGGG \ No newline at end of file +PolyG GGGGGGGGGGGG From af0cb1bfc45fefc2fa52438125cb9f43fe14223c Mon Sep 17 00:00:00 2001 From: Andrew D Smith Date: Tue, 19 May 2026 11:58:47 -0700 Subject: [PATCH 2/2] src/FalcoConfig.cpp: changed default hard-coded adapters to drop SOLID and include PolyA and PolyG --- src/FalcoConfig.cpp | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/src/FalcoConfig.cpp b/src/FalcoConfig.cpp index 1d855e3..ec95ee5 100644 --- a/src/FalcoConfig.cpp +++ b/src/FalcoConfig.cpp @@ -221,7 +221,8 @@ static const auto adapter_names = std::vector{ "Illumina Small RNA 3 prime Adapter", "Illumina Small RNA 5 prime Adapter", "Nextera Transposase Sequence", - "SOLID Small RNA Adapter", + "PolyA", + "PolyG", }; // Actual string sequence (eg: ATTGCCACA) @@ -231,7 +232,8 @@ static const auto adapter_seqs = std::vector{ "TGGAATTCTCGG", "GATCGTCGGACT", "CTGTCTCTTATA", - "CGCCTTGGCCGT", + "AAAAAAAAAAAA", + "GGGGGGGGGGGG", }; // clang-format on