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new file mode 100644
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diff --git a/database/github/iastro-pt/sBART/metadata.json b/database/github/iastro-pt/sBART/metadata.json
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diff --git a/docs/data.json b/docs/data.json
index 026d6eab2d..7cecdfb3b4 100644
--- a/docs/data.json
+++ b/docs/data.json
@@ -1,234 +1,290 @@
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- "description": "A standalone code to clean narrow-band RFI using Inter-Quartile Range Mitigation (IQRM) algorithm. The code works on SIGPROC format data and outputs a cleaned SIGRPOC format file. The output file is compatible with other standard pulsar software.",
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+ "rel": "/software/repository/gitlab/mcfrith/tantan",
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+ "avatar": "https://gitlab.comNone",
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+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/26123426/salamander.png",
+ "description": "[A python tool box for GPUMD simulations](https://calorine.materialsmodeling.org/)",
+ "topics": [
+ "atomic scale simulation",
+ "condensed matter physics",
+ "force constants",
+ "gpumd",
+ "hiphive",
+ "machine learning potentials",
+ "molecular dynamics",
+ "neural network potentials",
+ "phonons",
+ "physics",
+ "python",
+ "thermal conductivity",
+ "thermal transport"
+ ]
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+ "rel": "/software/repository/gitlab/leelamichaels/Omega",
"avatar": "https://gitlab.comNone",
- "description": "Python module to extract and reduce astronomical spectral data",
+ "description": "Code Omega release copy",
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},
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- "url": "https://gitlab.com/vda-lab/snowflake",
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+ "url": "https://gitlab.com/leelamichaels/Infinity",
+ "rel": "/software/repository/gitlab/leelamichaels/Infinity",
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+ "avatar": "https://gitlab.comNone",
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- "url": "https://gitlab.com/BioimageInformaticsGroup/openphi",
- "rel": "/software/repository/gitlab/BioimageInformaticsGroup/openphi",
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+ "url": "https://gitlab.com/leelamichaels/Burning_Arrow",
+ "rel": "/software/repository/gitlab/leelamichaels/Burning_Arrow",
"avatar": "https://gitlab.comNone",
- "description": "Open PatHology Interface - A Python API for accessing iSyntax digital pathology images",
+ "description": "Code Burning Arrow release copy",
"topics": []
},
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- "uid": "gitlab/rki_bioinformatics/HiLive2",
- "url": "https://gitlab.com/rki_bioinformatics/HiLive2",
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- "description": "HiLive2 is a read mapping tool that maps Illumina HiSeq (or comparable) reads right in the moment when they are produced. Please create issues for HiLive2 at https://gitlab.com/lokat/HiLive2.",
+ "uid": "gitlab/leelamichaels/Tranquillity",
+ "url": "https://gitlab.com/leelamichaels/Tranquillity",
+ "rel": "/software/repository/gitlab/leelamichaels/Tranquillity",
+ "avatar": "https://gitlab.comNone",
+ "description": "Code Tranquillity release copy",
"topics": []
},
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- "uid": "gitlab/rki_bioinformatics/IDeFIX",
- "url": "https://gitlab.com/rki_bioinformatics/IDeFIX",
- "rel": "/software/repository/gitlab/rki_bioinformatics/IDeFIX",
+ "uid": "gitlab/pyFBS/pyFBS",
+ "url": "https://gitlab.com/pyFBS/pyFBS",
+ "rel": "/software/repository/gitlab/pyFBS/pyFBS",
"avatar": "https://gitlab.comNone",
- "description": "Index checking for improved demultiplexing of NGS data",
+ "description": "A Python package for Frequency Based Substructuring and Transfer Path Analysis",
+ "topics": [
+ "3D Viewer",
+ "FRF synthetisation",
+ "MCK model",
+ "System Equivalent Modal Mixing",
+ "Virtual Point Transformation"
+ ]
+ },
+ {
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+ "url": "https://gitlab.com/David_Haegele/line_racer",
+ "rel": "/software/repository/gitlab/David_Haegele/line_racer",
+ "avatar": "https://gitlab.comNone",
+ "description": null,
"topics": []
},
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+ "uid": "gitlab/robizzard/libcdict",
+ "url": "https://gitlab.com/rob.izzard/libcdict",
+ "rel": "/software/repository/gitlab/robizzard/libcdict",
+ "avatar": "https://gitlab.comNone",
+ "description": "A generic associative array, also know as dictionary or hash, library in C, based on uthash and extended to be more user friendly and include integration features such as JSON output.",
"topics": []
},
{
- "uid": "gitlab/project-dare/dare-platform",
- "url": "https://gitlab.com/project-dare/dare-platform",
- "rel": "/software/repository/gitlab/project-dare/dare-platform",
- "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/14873006/dare.png",
+ "uid": "gitlab/fduchate/predihood",
+ "url": "https://gitlab.com/fduchate/predihood",
+ "rel": "/software/repository/gitlab/fduchate/predihood",
+ "avatar": "https://gitlab.comNone",
"description": "",
"topics": []
},
{
- "uid": "gitlab/ostrokach/proteinsolver",
- "url": "https://gitlab.com/ostrokach/proteinsolver",
- "rel": "/software/repository/gitlab/ostrokach/proteinsolver",
- "avatar": "https://gitlab.comNone",
- "description": "Graph neural network capable of generating novel amino acid sequences that fold into proteins with predetermined topologies.\r\n\r\n",
- "topics": [
- "protein design",
- "python"
- ]
+ "uid": "gitlab/medbio/disgenet2r",
+ "url": "https://gitlab.com/medbio/disgenet2r",
+ "rel": "/software/repository/gitlab/medbio/disgenet2r",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/58949561/Profile_Pic_Disgenet.png",
+ "description": null,
+ "topics": []
},
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- "uid": "gitlab/geekysquirrel/bigx",
- "url": "https://gitlab.com/geekysquirrel/bigx",
- "rel": "/software/repository/gitlab/geekysquirrel/bigx",
- "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/10925765/bigx.png",
- "description": "A data visualisation tool for geographic datasets",
+ "uid": "gitlab/bu_cnio/vulcanspot",
+ "url": "https://gitlab.com/bu_cnio/vulcanspot",
+ "rel": "/software/repository/gitlab/bu_cnio/vulcanspot",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/12800427/logo.png",
+ "description": "",
"topics": []
},
{
- "uid": "gitlab/cosmograil/starred",
- "url": "https://gitlab.com/cosmograil/starred",
- "rel": "/software/repository/gitlab/cosmograil/starred",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/38194257/starred_main_image.png",
- "description": "A two-channel deconvolution method with Starlet regularization",
- "topics": [
- "Deconvolution",
- "astronomy",
- "psf",
- "python"
- ]
+ "uid": "gitlab/libreumg/dataquier",
+ "url": "https://gitlab.com/libreumg/dataquier",
+ "rel": "/software/repository/gitlab/libreumg/dataquier",
+ "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/14144828/logo_ship.png",
+ "description": "",
+ "topics": []
},
{
- "uid": "gitlab/cosmograil/PyCS3",
- "url": "https://gitlab.com/cosmograil/PyCS3",
- "rel": "/software/repository/gitlab/cosmograil/PyCS3",
- "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/7888463/cover_image_1.png",
- "description": "PyCS for python 3",
+ "uid": "gitlab/RKIBioinformaticsPipelines/QCumber",
+ "url": "https://gitlab.com/RKIBioinformaticsPipelines/QCumber",
+ "rel": "/software/repository/gitlab/RKIBioinformaticsPipelines/QCumber",
+ "avatar": "https://gitlab.comNone",
+ "description": "quality control of genomic sequences",
"topics": []
},
{
- "uid": "gitlab/habermann_lab/phasik",
- "url": "https://gitlab.com/habermann_lab/phasik",
- "rel": "/software/repository/gitlab/habermann_lab/phasik",
+ "uid": "gitlab/mauricemolli/petitRADTRANS",
+ "url": "https://gitlab.com/mauricemolli/petitRADTRANS",
+ "rel": "/software/repository/gitlab/mauricemolli/petitRADTRANS",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/4048028/logo_radtrans.gif",
+ "description": null,
+ "topics": []
+ },
+ {
+ "uid": "gitlab/chrjan/seq-seq-pan",
+ "url": "https://gitlab.com/chrjan/seq-seq-pan",
+ "rel": "/software/repository/gitlab/chrjan/seq-seq-pan",
"avatar": "https://gitlab.comNone",
- "description": "Scientific tools for extracting cyclic data via hierarchical clustering",
+ "description": "seq-seq-pan is a workflow for the SEQuential alignment of SEQuences to build a PAN-genome data structure and a whole-genome-alignment.",
"topics": []
},
{
- "uid": "gitlab/chaver/choco-mining",
- "url": "https://gitlab.com/chaver/choco-mining",
- "rel": "/software/repository/gitlab/chaver/choco-mining",
+ "uid": "gitlab/casi-project/casi-2d",
+ "url": "https://gitlab.com/casi-project/casi-2d",
+ "rel": "/software/repository/gitlab/casi-project/casi-2d",
"avatar": "https://gitlab.comNone",
- "description": "Data mining with Choco solver",
- "topics": [
- "Association Rules Mining",
- "Choco solver",
- "Constraint Programming",
- "Pareto",
- "Skypattern",
- "data mining",
- "pattern mining"
- ]
+ "description": "Identification of stellar feedback signatures in simulated molecular clouds using methods from deep learning.",
+ "topics": []
},
{
- "uid": "gitlab/andresruiz/Sparkling",
- "url": "https://gitlab.com/andresruiz/Sparkling",
- "rel": "/software/repository/gitlab/andresruiz/Sparkling",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/58179358/logo.png",
- "description": "Spherical cosmic voids finder.",
+ "uid": "gitlab/casi-project/casi-3d",
+ "url": "https://gitlab.com/casi-project/casi-3d",
+ "rel": "/software/repository/gitlab/casi-project/casi-3d",
+ "avatar": "https://gitlab.comNone",
+ "description": null,
"topics": []
},
{
- "uid": "gitlab/mainlabwsu/bims",
- "url": "https://gitlab.com/mainlabwsu/bims",
- "rel": "/software/repository/gitlab/mainlabwsu/bims",
+ "uid": "gitlab/aegge/comet-emu",
+ "url": "https://gitlab.com/aegge/comet-emu",
+ "rel": "/software/repository/gitlab/aegge/comet-emu",
"avatar": "https://gitlab.comNone",
- "description": "BIMS",
+ "description": null,
"topics": []
},
{
- "uid": "gitlab/ampere2/metalwalls",
- "url": "https://gitlab.com/ampere2/metalwalls",
- "rel": "/software/repository/gitlab/ampere2/metalwalls",
+ "uid": "gitlab/gmamon/MAMPOSSt",
+ "url": "https://gitlab.com/gmamon/MAMPOSSt",
+ "rel": "/software/repository/gitlab/gmamon/MAMPOSSt",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/6066861/MAMPOSSt_logo.png",
+ "description": null,
+ "topics": [
+ "Mass/orbit modeling"
+ ]
+ },
+ {
+ "uid": "gitlab/rahmannlab/episegmix",
+ "url": "https://gitlab.com/rahmannlab/episegmix",
+ "rel": "/software/repository/gitlab/rahmannlab/episegmix",
"avatar": "https://gitlab.comNone",
- "description": "",
+ "description": null,
"topics": []
},
{
- "uid": "gitlab/mule-tools/package-x",
- "url": "https://gitlab.com/mule-tools/package-x",
- "rel": "/software/repository/gitlab/mule-tools/package-x",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/37935976/PackageXIcon.png",
- "description": "A re-publication of [Package-X](http://web.archive.org/web/20220619174704/packagex.hepforge.org/). All credit to Hiren Patel!",
+ "uid": "gitlab/random-quintessence/random-quintessence",
+ "url": "https://gitlab.com/random-quintessence/random-quintessence",
+ "rel": "/software/repository/gitlab/random-quintessence/random-quintessence",
+ "avatar": "https://gitlab.comNone",
+ "description": null,
"topics": []
},
{
- "uid": "gitlab/jason-rumengan/pyarma",
- "url": "https://gitlab.com/jason-rumengan/pyarma",
- "rel": "/software/repository/gitlab/jason-rumengan/pyarma",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/22728285/pyarma_logo1.png",
- "description": "PyArmadillo - linear algebra library for Python with MATLAB-like syntax - https://pyarma.sourceforge.io",
+ "uid": "gitlab/souvlaki/thalassa",
+ "url": "https://gitlab.com/souvlaki/thalassa",
+ "rel": "/software/repository/gitlab/souvlaki/thalassa",
+ "avatar": "https://gitlab.comNone",
+ "description": null,
+ "topics": []
+ },
+ {
+ "uid": "gitlab/etienne.behar/menura",
+ "url": "https://gitlab.com/etienne.behar/menura",
+ "rel": "/software/repository/gitlab/etienne.behar/menura",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/24686946/menura_logo2_thumb.png",
+ "description": "Menura is a space plasma simulation code. It is built around a hybrid Particle In Cell (PIC) solver, running on Graphics Processing Units. More informations on https://menura.readthedocs.io",
"topics": [
- "BLAS",
- "C++",
- "LAPACK",
- "Linear Algebra",
- "MATLAB",
- "Python",
- "Scientifc Computing"
+ "plasma",
+ "simulation",
+ "solar wind",
+ "turbulence"
]
},
{
@@ -251,375 +307,369 @@
]
},
{
- "uid": "gitlab/medbio/disgenet2r",
- "url": "https://gitlab.com/medbio/disgenet2r",
- "rel": "/software/repository/gitlab/medbio/disgenet2r",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/58949561/Profile_Pic_Disgenet.png",
- "description": null,
- "topics": []
- },
- {
- "uid": "gitlab/cosapp/cosapp",
- "url": "https://gitlab.com/cosapp/cosapp",
- "rel": "/software/repository/gitlab/cosapp/cosapp",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/19967329/cosapp_web.png",
- "description": "CoSApp core package",
+ "uid": "gitlab/ztzou/phydl",
+ "url": "https://gitlab.com/ztzou/phydl",
+ "rel": "/software/repository/gitlab/ztzou/phydl",
+ "avatar": "https://gitlab.comNone",
+ "description": "Phylogenetics by Deep Learning. A residual neural network for inference of quartet phylogenetic tree topology.",
"topics": []
},
{
- "uid": "gitlab/jesseds/apav",
- "url": "https://gitlab.com/jesseds/apav",
- "rel": "/software/repository/gitlab/jesseds/apav",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/10414782/g39334.png",
- "description": "APAV (Atom Probe Analysis and Visualization) is a Python library for the analysis and\r\nvisualization of atom probe tomography experiments.",
- "topics": [
- "Atom Probe",
- "Field Evaporation",
- "data analysis",
- "science",
- "tomography"
- ]
- },
- {
- "uid": "gitlab/David_Haegele/line_racer",
- "url": "https://gitlab.com/David_Haegele/line_racer",
- "rel": "/software/repository/gitlab/David_Haegele/line_racer",
+ "uid": "gitlab/vda-lab/snowflake",
+ "url": "https://gitlab.com/vda-lab/snowflake",
+ "rel": "/software/repository/gitlab/vda-lab/snowflake",
"avatar": "https://gitlab.comNone",
"description": null,
"topics": []
},
{
- "uid": "gitlab/magnumpi/magnumpi",
- "url": "https://gitlab.com/magnumpi/magnumpi",
- "rel": "/software/repository/gitlab/magnumpi/magnumpi",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/8913469/Tom_20Selleck_20as_20Thomas_20Magnum_20P.I._large.jpg",
- "description": "Potential Integrator",
+ "uid": "gitlab/petsc/petsc",
+ "url": "https://gitlab.com/petsc/petsc",
+ "rel": "/software/repository/gitlab/petsc/petsc",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/13882401/PETSc_RBG-logo.png",
+ "description": "PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations.",
"topics": []
},
{
- "uid": "gitlab/ezlab/busco",
- "url": "https://gitlab.com/ezlab/busco",
- "rel": "/software/repository/gitlab/ezlab/busco",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/1544766/Screen_Shot_2019-11-26_at_17.26.57.png",
- "description": "Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs (BUSCO)",
+ "uid": "gitlab/aroffringa/aoflagger",
+ "url": "https://gitlab.com/aroffringa/aoflagger",
+ "rel": "/software/repository/gitlab/aroffringa/aoflagger",
+ "avatar": "https://gitlab.comNone",
+ "description": "The AOFlagger is a tool that can find and remove radio-frequency interference (RFI) in radio astronomical observations. It can make use of Lua scripts to make flagging strategies flexible, and the tools are applicable to a wide set of telescopes.",
"topics": []
},
{
- "uid": "gitlab/Molcas/OpenMolcas",
- "url": "https://gitlab.com/Molcas/OpenMolcas",
- "rel": "/software/repository/gitlab/Molcas/OpenMolcas",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/3536517/logo_open_flat.png",
- "description": "OpenMolcas is a quantum chemistry software package.\r\n\r\nThe key feature of OpenMolcas is the multiconfigurational approach to the electronic structure.",
- "topics": [
- "chemistry",
- "physics",
- "quantum"
- ]
- },
- {
- "uid": "gitlab/EliseLei/easychem",
- "url": "https://gitlab.com/EliseLei/easychem",
- "rel": "/software/repository/gitlab/EliseLei/easychem",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/39021845/easyCHEM_logo_light.png",
- "description": null,
+ "uid": "gitlab/aroffringa/wsclean",
+ "url": "https://gitlab.com/aroffringa/wsclean",
+ "rel": "/software/repository/gitlab/aroffringa/wsclean",
+ "avatar": "https://gitlab.comNone",
+ "description": "WSClean (w-stacking clean) is a fast generic widefield imager. It implements several gridding algorithms and offers fully-automated multi-scale multi-frequency deconvolution. Manual: https://wsclean.readthedocs.io/",
"topics": []
},
{
- "uid": "gitlab/ChemBioHub/tpmap",
- "url": "https://gitlab.com/ChemBioHub/tpmap",
- "rel": "/software/repository/gitlab/ChemBioHub/tpmap",
- "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/18237261/favicon.png",
- "description": "Thermal Profiling Meltome Analysis Program",
+ "uid": "gitlab/eleonoraalei/exo-mercat-gui",
+ "url": "https://gitlab.com/eleonoraalei/exo-mercat-gui",
+ "rel": "/software/repository/gitlab/eleonoraalei/exo-mercat-gui",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/12601405/Untitled-1.png",
+ "description": "The Graphical User Interface of Exo-MerCat.",
"topics": []
},
{
- "uid": "gitlab/ffaucher/hawen",
- "url": "https://gitlab.com/ffaucher/hawen",
- "rel": "/software/repository/gitlab/ffaucher/hawen",
- "avatar": "https://gitlab.comNone",
- "description": "time-HArmonic Wave modEling and INversion using Hybridizable Discontinuous Galerkin Discretization (hawen). The code is written in Fortran90, for forward and inverse time-harmonic wave problems. It uses mpi and openmp parallelism.",
+ "uid": "gitlab/elsi_project/elsi_interface",
+ "url": "https://gitlab.com/elsi_project/elsi_interface",
+ "rel": "/software/repository/gitlab/elsi_project/elsi_interface",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/20804728/elsi_200629.png",
+ "description": "ELSI: A software interface designed for electronic structure codes to connect with ELPA, libOMM, PEXSI, EigenExa, SLEPc, NTPoly, BSEPACK, LAPACK, MAGMA, and other solver libraries.",
"topics": []
},
{
- "uid": "gitlab/JuditGG/trumpetplots",
- "url": "https://gitlab.com/JuditGG/trumpetplots",
- "rel": "/software/repository/gitlab/JuditGG/trumpetplots",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/45249770/trumpet-icon-design-free-vector.jpg",
- "description": "Rpackage for Trumpet plots",
- "topics": [
- "genetics",
- "gwas",
- "visualization"
- ]
+ "uid": "gitlab/cosmology-ethz/ufig",
+ "url": "https://gitlab.com/cosmology-ethz/ufig",
+ "rel": "/software/repository/gitlab/cosmology-ethz/ufig",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/64659173/example_image_small.jpg",
+ "description": "UFig: The Ultra Fast Image Generator",
+ "topics": []
},
{
- "uid": "gitlab/MartinBeseda/sa-oo-vqe-qiskit",
- "url": "https://gitlab.com/MartinBeseda/sa-oo-vqe-qiskit",
- "rel": "/software/repository/gitlab/MartinBeseda/sa-oo-vqe-qiskit",
+ "uid": "gitlab/emd-dev/emd",
+ "url": "https://gitlab.com/emd-dev/emd",
+ "rel": "/software/repository/gitlab/emd-dev/emd",
"avatar": "https://gitlab.comNone",
- "description": "Qiskit version of SA-OO-VQE",
+ "description": "Empirical Mode Decomposition in Python\r\n\r\n![\"pipeline](\"https://gitlab.com/ajquinn/emd/badges/master/pipeline.svg\")
",
"topics": []
},
{
- "uid": "gitlab/andreas.andrusch/paipline",
- "url": "https://gitlab.com/andreas.andrusch/paipline",
- "rel": "/software/repository/gitlab/andreas.andrusch/paipline",
+ "uid": "gitlab/InspectorCell/inspectorcell",
+ "url": "https://gitlab.com/InspectorCell/inspectorcell",
+ "rel": "/software/repository/gitlab/InspectorCell/inspectorcell",
"avatar": "https://gitlab.comNone",
- "description": "Pipeline for the Automatic Identification of Pathogens",
+ "description": "InspectorCell provides an efficient workflow and graphical interface to generate high-quality training datasets from\r\nhighly multiplexed microscopy images.",
"topics": []
},
{
- "uid": "gitlab/dglaeser/fieldcompare",
- "url": "https://gitlab.com/dglaeser/fieldcompare",
- "rel": "/software/repository/gitlab/dglaeser/fieldcompare",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/32838547/fcompare_logo.png",
- "description": "Python package with command-line interface to compare field data",
+ "uid": "gitlab/treangenlab/emu",
+ "url": "https://gitlab.com/treangenlab/emu",
+ "rel": "/software/repository/gitlab/treangenlab/emu",
+ "avatar": "https://gitlab.com/treangenlab/emu/-/avatar",
+ "description": "EMu is a relative abundance estimator for 16S genomic sequences",
"topics": []
},
{
- "uid": "gitlab/bu_cnio/vulcanspot",
- "url": "https://gitlab.com/bu_cnio/vulcanspot",
- "rel": "/software/repository/gitlab/bu_cnio/vulcanspot",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/12800427/logo.png",
+ "uid": "gitlab/treangenlab/vulcan",
+ "url": "https://gitlab.com/treangenlab/vulcan",
+ "rel": "/software/repository/gitlab/treangenlab/vulcan",
+ "avatar": "https://gitlab.comNone",
"description": "",
"topics": []
},
{
- "uid": "gitlab/aegge/comet-emu",
- "url": "https://gitlab.com/aegge/comet-emu",
- "rel": "/software/repository/gitlab/aegge/comet-emu",
+ "uid": "gitlab/binary_c/binary_c-python",
+ "url": "https://gitlab.com/binary_c/binary_c-python",
+ "rel": "/software/repository/gitlab/binary_c/binary_c-python",
"avatar": "https://gitlab.comNone",
- "description": null,
+ "description": "Python module to interface with the binary_c stellar population framework.\r\n\r\nThe current stable branch is 1.0.0 which you can find in the [releases/1.0.0/2.2.4 branch](https://gitlab.com/binary_c/binary_c-python/-/tree/releases/1.0.0/2.2.4) which works with [binary_c version 2.2.4](https://gitlab.com/binary_c/binary_c/-/tree/development/2.2.4)",
"topics": []
},
{
- "uid": "gitlab/cracklet/cracklet",
- "url": "https://gitlab.com/cracklet/cracklet",
- "rel": "/software/repository/gitlab/cracklet/cracklet",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/25188173/logo_large.png",
- "description": "cRacklet is a C++ boundary element library based on a spectral formulation of the elastodynamic wave equations in continuum solids.",
+ "uid": "gitlab/kmrajwade/iqrm_apollo",
+ "url": "https://gitlab.com/kmrajwade/iqrm_apollo",
+ "rel": "/software/repository/gitlab/kmrajwade/iqrm_apollo",
+ "avatar": "https://gitlab.comNone",
+ "description": "A standalone code to clean narrow-band RFI using Inter-Quartile Range Mitigation (IQRM) algorithm. The code works on SIGPROC format data and outputs a cleaned SIGRPOC format file. The output file is compatible with other standard pulsar software.",
"topics": []
},
{
- "uid": "gitlab/materials-modeling/calorine",
- "url": "https://gitlab.com/materials-modeling/calorine",
- "rel": "/software/repository/gitlab/materials-modeling/calorine",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/26123426/salamander.png",
- "description": "[A python tool box for GPUMD simulations](https://calorine.materialsmodeling.org/)",
+ "uid": "gitlab/ostrokach/proteinsolver",
+ "url": "https://gitlab.com/ostrokach/proteinsolver",
+ "rel": "/software/repository/gitlab/ostrokach/proteinsolver",
+ "avatar": "https://gitlab.comNone",
+ "description": "Graph neural network capable of generating novel amino acid sequences that fold into proteins with predetermined topologies.\r\n\r\n",
"topics": [
- "atomic scale simulation",
- "condensed matter physics",
- "force constants",
- "gpumd",
- "hiphive",
- "machine learning potentials",
- "molecular dynamics",
- "neural network potentials",
- "phonons",
- "physics",
- "python",
- "thermal conductivity",
- "thermal transport"
+ "protein design",
+ "python"
]
},
{
- "uid": "gitlab/joseaher/astroplotlib",
- "url": "https://gitlab.com/joseaher/astroplotlib",
- "rel": "/software/repository/gitlab/joseaher/astroplotlib",
+ "uid": "gitlab/chiemotono/mdcontactcom",
+ "url": "https://gitlab.com/chiemotono/mdcontactcom",
+ "rel": "/software/repository/gitlab/chiemotono/mdcontactcom",
"avatar": "https://gitlab.comNone",
- "description": null,
+ "description": "",
"topics": []
},
{
- "uid": "gitlab/leelamichaels/Burning_Arrow",
- "url": "https://gitlab.com/leelamichaels/Burning_Arrow",
- "rel": "/software/repository/gitlab/leelamichaels/Burning_Arrow",
- "avatar": "https://gitlab.comNone",
- "description": "Code Burning Arrow release copy",
+ "uid": "gitlab/gims-developers/gims",
+ "url": "https://gitlab.com/gims-developers/gims",
+ "rel": "/software/repository/gitlab/gims-developers/gims",
+ "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/16358286/GIMSLogo.png",
+ "description": "GIMS -- Graphical Interface for Materials Simulations -- is an open-source, browser-based toolbox for electronic structure codes. Try it here: [gims.ms1p.org](https://gims.ms1p.org)",
"topics": []
},
{
- "uid": "gitlab/leelamichaels/Omega",
- "url": "https://gitlab.com/leelamichaels/Omega",
- "rel": "/software/repository/gitlab/leelamichaels/Omega",
+ "uid": "gitlab/jtagusari/hrisk-noisemodelling",
+ "url": "https://gitlab.com/jtagusari/hrisk-noisemodelling",
+ "rel": "/software/repository/gitlab/jtagusari/hrisk-noisemodelling",
"avatar": "https://gitlab.comNone",
- "description": "Code Omega release copy",
+ "description": null,
"topics": []
},
{
- "uid": "gitlab/leelamichaels/Tranquillity",
- "url": "https://gitlab.com/leelamichaels/Tranquillity",
- "rel": "/software/repository/gitlab/leelamichaels/Tranquillity",
- "avatar": "https://gitlab.comNone",
- "description": "Code Tranquillity release copy",
+ "uid": "gitlab/open-darts/open-darts",
+ "url": "https://gitlab.com/open-darts/open-darts",
+ "rel": "/software/repository/gitlab/open-darts/open-darts",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/43477574/logo.png",
+ "description": "The DARTS framework is designed for forward and inverse modeling in geo-energy applications.",
+ "topics": [
+ "energy transition",
+ "geothermal energy production",
+ "modeling of CO2 sequestration"
+ ]
+ },
+ {
+ "uid": "gitlab/AstroVian/bmarxiv",
+ "url": "https://gitlab.com/AstroVian/bmarxiv",
+ "rel": "/software/repository/gitlab/AstroVian/bmarxiv",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/28500894/PAph_dog.gif",
+ "description": null,
"topics": []
},
{
- "uid": "gitlab/leelamichaels/Infinity",
- "url": "https://gitlab.com/leelamichaels/Infinity",
- "rel": "/software/repository/gitlab/leelamichaels/Infinity",
- "avatar": "https://gitlab.comNone",
- "description": "Code Infinity release copy",
+ "uid": "gitlab/ChemBioHub/tpmap",
+ "url": "https://gitlab.com/ChemBioHub/tpmap",
+ "rel": "/software/repository/gitlab/ChemBioHub/tpmap",
+ "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/18237261/favicon.png",
+ "description": "Thermal Profiling Meltome Analysis Program",
"topics": []
},
{
- "uid": "gitlab/leelamichaels/Elysium",
- "url": "https://gitlab.com/leelamichaels/Elysium",
- "rel": "/software/repository/gitlab/leelamichaels/Elysium",
+ "uid": "gitlab/mcfuman/SpectraPy",
+ "url": "https://gitlab.com/mcfuman/SpectraPy",
+ "rel": "/software/repository/gitlab/mcfuman/SpectraPy",
"avatar": "https://gitlab.comNone",
- "description": "Code Elysium release copy",
+ "description": "Python module to extract and reduce astronomical spectral data",
"topics": []
},
{
- "uid": "gitlab/casi-project/casi-3d",
- "url": "https://gitlab.com/casi-project/casi-3d",
- "rel": "/software/repository/gitlab/casi-project/casi-3d",
- "avatar": "https://gitlab.comNone",
- "description": null,
+ "uid": "gitlab/ENKI-portal/ThermoCodegen",
+ "url": "https://gitlab.com/ENKI-portal/ThermoCodegen",
+ "rel": "/software/repository/gitlab/ENKI-portal/ThermoCodegen",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/37653498/tcg_logo_cropped.png",
+ "description": "ThermoCodegen: a python/C++ package for the generation of custom thermodynamic models",
"topics": []
},
{
- "uid": "gitlab/casi-project/casi-2d",
- "url": "https://gitlab.com/casi-project/casi-2d",
- "rel": "/software/repository/gitlab/casi-project/casi-2d",
- "avatar": "https://gitlab.comNone",
- "description": "Identification of stellar feedback signatures in simulated molecular clouds using methods from deep learning.",
+ "uid": "gitlab/ENKI-portal/vaporock",
+ "url": "https://gitlab.com/ENKI-portal/vaporock",
+ "rel": "/software/repository/gitlab/ENKI-portal/vaporock",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/18914416/vaporock.png",
+ "description": "Thermodynamics of vaporized silicate rocks & melts for modeling magma ocean atmospheres and stellar nebula",
"topics": []
},
{
- "uid": "gitlab/mcfrith/last",
- "url": "https://gitlab.com/mcfrith/last",
- "rel": "/software/repository/gitlab/mcfrith/last",
- "avatar": "https://gitlab.comNone",
- "description": "finds & aligns related regions of sequences. LAST is designed for moderately large data (e.g. genomes, DNA reads, proteomes).",
+ "uid": "gitlab/ENKI-portal/ThermoEngine",
+ "url": "https://gitlab.com/ENKI-portal/ThermoEngine",
+ "rel": "/software/repository/gitlab/ENKI-portal/ThermoEngine",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/2313798/Untitled.png",
+ "description": "Python, C, C++ and Objective C code that Implement thermodynamic properties of stoichiometric phases and solutions. This is the main code repository of the ENKI project.",
"topics": []
},
{
- "uid": "gitlab/mcfrith/lamassemble",
- "url": "https://gitlab.com/mcfrith/lamassemble",
- "rel": "/software/repository/gitlab/mcfrith/lamassemble",
- "avatar": "https://gitlab.comNone",
- "description": "Merges overlapping \"long\" DNA reads into a consensus sequences",
+ "uid": "gitlab/cosapp/cosapp",
+ "url": "https://gitlab.com/cosapp/cosapp",
+ "rel": "/software/repository/gitlab/cosapp/cosapp",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/19967329/cosapp_web.png",
+ "description": "CoSApp core package",
"topics": []
},
{
- "uid": "gitlab/mcfrith/tantan",
- "url": "https://gitlab.com/mcfrith/tantan",
- "rel": "/software/repository/gitlab/mcfrith/tantan",
+ "uid": "gitlab/ffaucher/hawen",
+ "url": "https://gitlab.com/ffaucher/hawen",
+ "rel": "/software/repository/gitlab/ffaucher/hawen",
"avatar": "https://gitlab.comNone",
- "description": "low complexity and tandem repeat masker for biosequences",
+ "description": "time-HArmonic Wave modEling and INversion using Hybridizable Discontinuous Galerkin Discretization (hawen). The code is written in Fortran90, for forward and inverse time-harmonic wave problems. It uses mpi and openmp parallelism.",
"topics": []
},
{
- "uid": "gitlab/mcfrith/paraclu",
- "url": "https://gitlab.com/mcfrith/paraclu",
- "rel": "/software/repository/gitlab/mcfrith/paraclu",
- "avatar": "https://gitlab.comNone",
- "description": "Parametric clustering of genomic and transcriptomic features",
+ "uid": "gitlab/sybreton/apollinaire",
+ "url": "https://gitlab.com/sybreton/apollinaire",
+ "rel": "/software/repository/gitlab/sybreton/apollinaire",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/17312517/apollinaire_logo_2.png",
+ "description": "Python tools for helio- and asteroseismic peakbagging frameworks.",
"topics": []
},
{
- "uid": "gitlab/wpettersson/kep_solver",
- "url": "https://gitlab.com/wpettersson/kep_solver",
- "rel": "/software/repository/gitlab/wpettersson/kep_solver",
+ "uid": "gitlab/pythia-uq/pythia",
+ "url": "https://gitlab.com/pythia-uq/pythia",
+ "rel": "/software/repository/gitlab/pythia-uq/pythia",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/45854627/logo_small.png",
+ "description": "PyThia Uncertainty Quantification Toolbox",
+ "topics": []
+ },
+ {
+ "uid": "gitlab/project-dare/dare-platform",
+ "url": "https://gitlab.com/project-dare/dare-platform",
+ "rel": "/software/repository/gitlab/project-dare/dare-platform",
+ "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/14873006/dare.png",
+ "description": "",
+ "topics": []
+ },
+ {
+ "uid": "gitlab/andreas.andrusch/paipline",
+ "url": "https://gitlab.com/andreas.andrusch/paipline",
+ "rel": "/software/repository/gitlab/andreas.andrusch/paipline",
"avatar": "https://gitlab.comNone",
- "description": "A Python package for reading and solving single instances of kidney exchange problems. ",
+ "description": "Pipeline for the Automatic Identification of Pathogens",
"topics": []
},
{
- "uid": "gitlab/davidwoodburn/itrm",
- "url": "https://gitlab.com/davidwoodburn/itrm",
- "rel": "/software/repository/gitlab/davidwoodburn/itrm",
+ "uid": "gitlab/chjordan/sslf",
+ "url": "https://gitlab.com/chjordan/sslf",
+ "rel": "/software/repository/gitlab/chjordan/sslf",
"avatar": "https://gitlab.comNone",
- "description": "Interactive Terminal Utilities",
- "topics": [
- "ascii-art",
- "interactive",
- "plotting",
- "terminal"
- ]
+ "description": "Simple Spectral Line Finder",
+ "topics": []
},
{
- "uid": "gitlab/davidwoodburn/r3f",
- "url": "https://gitlab.com/davidwoodburn/r3f",
- "rel": "/software/repository/gitlab/davidwoodburn/r3f",
+ "uid": "gitlab/burstcube/mhealpy",
+ "url": "https://gitlab.com/burstcube/mhealpy",
+ "rel": "/software/repository/gitlab/burstcube/mhealpy",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/21249835/Screen_Shot_2020-09-20_at_3.59.09_PM.png",
+ "description": null,
+ "topics": []
+ },
+ {
+ "uid": "gitlab/ProjectRHEA/flowsolverrhea",
+ "url": "https://gitlab.com/ProjectRHEA/flowsolverrhea",
+ "rel": "/software/repository/gitlab/ProjectRHEA/flowsolverrhea",
"avatar": "https://gitlab.comNone",
- "description": "A library for three-dimensional, reference-frame conversions",
+ "description": "RHEA: an open-source Reproducible and Hybrid-architecture flow solver Engineered for Academia",
+ "topics": []
+ },
+ {
+ "uid": "gitlab/esa/pyxel",
+ "url": "https://gitlab.com/esa/pyxel",
+ "rel": "/software/repository/gitlab/esa/pyxel",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/10410719/square_logo.png",
+ "description": "Pyxel is a general detector simulation framework. An easy-to-use framework that can simulate a variety of imaging detector effects combined on images (e.g. radiation and optical effects, noises) made by CCD or CMOS-based detectors.",
"topics": [
- "ECEF",
- "Geodetic",
- "Inertial measurement unit",
- "navigation",
- "reference frames",
- "rotation"
+ "astronomy",
+ "camera",
+ "ccd",
+ "cmos",
+ "detector",
+ "imaging",
+ "mct",
+ "pixel",
+ "python",
+ "simulation"
]
},
{
- "uid": "gitlab/sybreton/apollinaire",
- "url": "https://gitlab.com/sybreton/apollinaire",
- "rel": "/software/repository/gitlab/sybreton/apollinaire",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/17312517/apollinaire_logo_2.png",
- "description": "Python tools for helio- and asteroseismic peakbagging frameworks.",
+ "uid": "gitlab/ampere2/metalwalls",
+ "url": "https://gitlab.com/ampere2/metalwalls",
+ "rel": "/software/repository/gitlab/ampere2/metalwalls",
+ "avatar": "https://gitlab.comNone",
+ "description": "",
"topics": []
},
{
- "uid": "gitlab/qc-devs/aqcnes",
- "url": "https://gitlab.com/qc-devs/aqcnes",
- "rel": "/software/repository/gitlab/qc-devs/aqcnes",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/60711361/ThermalExpansion_Subdomain.png",
- "description": "Mirror of https://gitlab.ethz.ch/mechanics-and-materials/aqcnes/",
- "topics": []
+ "uid": "gitlab/JuditGG/trumpetplots",
+ "url": "https://gitlab.com/JuditGG/trumpetplots",
+ "rel": "/software/repository/gitlab/JuditGG/trumpetplots",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/45249770/trumpet-icon-design-free-vector.jpg",
+ "description": "Rpackage for Trumpet plots",
+ "topics": [
+ "genetics",
+ "gwas",
+ "visualization"
+ ]
},
{
- "uid": "gitlab/cosmology-ethz/ufig",
- "url": "https://gitlab.com/cosmology-ethz/ufig",
- "rel": "/software/repository/gitlab/cosmology-ethz/ufig",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/64659173/example_image_small.jpg",
- "description": "UFig: The Ultra Fast Image Generator",
+ "uid": "gitlab/mobse/source-code",
+ "url": "https://gitlab.com/mobse/source-code",
+ "rel": "/software/repository/gitlab/mobse/source-code",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/15981708/mobse_code_copia.png",
+ "description": null,
"topics": []
},
{
- "uid": "gitlab/binary_c/binary_c-python",
- "url": "https://gitlab.com/binary_c/binary_c-python",
- "rel": "/software/repository/gitlab/binary_c/binary_c-python",
+ "uid": "gitlab/aceteam.kaist/ACE-Molecule",
+ "url": "https://gitlab.com/aceteam.kaist/ACE-Molecule",
+ "rel": "/software/repository/gitlab/aceteam.kaist/ACE-Molecule",
"avatar": "https://gitlab.comNone",
- "description": "Python module to interface with the binary_c stellar population framework.\r\n\r\nThe current stable branch is 1.0.0 which you can find in the [releases/1.0.0/2.2.4 branch](https://gitlab.com/binary_c/binary_c-python/-/tree/releases/1.0.0/2.2.4) which works with [binary_c version 2.2.4](https://gitlab.com/binary_c/binary_c/-/tree/development/2.2.4)",
+ "description": "GitLab repository for ACE-Molecule.",
"topics": []
},
{
- "uid": "gitlab/open-darts/open-darts",
- "url": "https://gitlab.com/open-darts/open-darts",
- "rel": "/software/repository/gitlab/open-darts/open-darts",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/43477574/logo.png",
- "description": "The DARTS framework is designed for forward and inverse modeling in geo-energy applications.",
- "topics": [
- "energy transition",
- "geothermal energy production",
- "modeling of CO2 sequestration"
- ]
+ "uid": "gitlab/mule-tools/package-x",
+ "url": "https://gitlab.com/mule-tools/package-x",
+ "rel": "/software/repository/gitlab/mule-tools/package-x",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/37935976/PackageXIcon.png",
+ "description": "A re-publication of [Package-X](http://web.archive.org/web/20220619174704/packagex.hepforge.org/). All credit to Hiren Patel!",
+ "topics": []
},
{
- "uid": "gitlab/moerman1/fhi-cc4s",
- "url": "https://gitlab.com/moerman1/fhi-cc4s",
- "rel": "/software/repository/gitlab/moerman1/fhi-cc4s",
+ "uid": "gitlab/ags-data-format-wg/ags-python-library",
+ "url": "https://gitlab.com/ags-data-format-wg/ags-python-library",
+ "rel": "/software/repository/gitlab/ags-data-format-wg/ags-python-library",
"avatar": "https://gitlab.comNone",
- "description": "This project constitutes the interface between the Fritz Haber Institute ab initio molecular simulations (FHI-aims) and the Coupled Cluster for Solids (CC4S) code developed by Felix Hummel and Adreas Grueneis at the TU Wien. \r\n",
+ "description": "A library to read and write AGS files using Pandas DataFrames",
"topics": []
},
{
- "uid": "gitlab/ztzou/phydl",
- "url": "https://gitlab.com/ztzou/phydl",
- "rel": "/software/repository/gitlab/ztzou/phydl",
+ "uid": "gitlab/MartinBeseda/sa-oo-vqe-qiskit",
+ "url": "https://gitlab.com/MartinBeseda/sa-oo-vqe-qiskit",
+ "rel": "/software/repository/gitlab/MartinBeseda/sa-oo-vqe-qiskit",
"avatar": "https://gitlab.comNone",
- "description": "Phylogenetics by Deep Learning. A residual neural network for inference of quartet phylogenetic tree topology.",
+ "description": "Qiskit version of SA-OO-VQE",
"topics": []
},
{
- "uid": "gitlab/sissopp_developers/sissopp",
- "url": "https://gitlab.com/sissopp_developers/sissopp",
- "rel": "/software/repository/gitlab/sissopp_developers/sissopp",
+ "uid": "gitlab/BioimageInformaticsGroup/openphi",
+ "url": "https://gitlab.com/BioimageInformaticsGroup/openphi",
+ "rel": "/software/repository/gitlab/BioimageInformaticsGroup/openphi",
"avatar": "https://gitlab.comNone",
- "description": "C++ implementation of sisso.",
+ "description": "Open PatHology Interface - A Python API for accessing iSyntax digital pathology images",
"topics": []
},
{
@@ -638,11 +688,47 @@
]
},
{
- "uid": "gitlab/ags-data-format-wg/ags-python-library",
- "url": "https://gitlab.com/ags-data-format-wg/ags-python-library",
- "rel": "/software/repository/gitlab/ags-data-format-wg/ags-python-library",
+ "uid": "gitlab/groimp-plugins/Pointcloud",
+ "url": "https://gitlab.com/groimp-plugins/pointcloud",
+ "rel": "/software/repository/gitlab/groimp-plugins/Pointcloud",
"avatar": "https://gitlab.comNone",
- "description": "A library to read and write AGS files using Pandas DataFrames",
+ "description": null,
+ "topics": []
+ },
+ {
+ "uid": "gitlab/vincent-sater/umigen",
+ "url": "https://gitlab.com/vincent-sater/umigen",
+ "rel": "/software/repository/gitlab/vincent-sater/umigen",
+ "avatar": "https://gitlab.comNone",
+ "description": "UMI-based reads simulator for variant calling evaluation in paired-end sequencing NGS libraries",
+ "topics": []
+ },
+ {
+ "uid": "gitlab/mainlabwsu/bims",
+ "url": "https://gitlab.com/mainlabwsu/bims",
+ "rel": "/software/repository/gitlab/mainlabwsu/bims",
+ "avatar": "https://gitlab.comNone",
+ "description": "BIMS",
+ "topics": []
+ },
+ {
+ "uid": "gitlab/permafrostnet/teaspoon",
+ "url": "https://gitlab.com/permafrostnet/teaspoon",
+ "rel": "/software/repository/gitlab/permafrostnet/teaspoon",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/35916406/teaspooncolor_p.png",
+ "description": "Python for permafrost temperature data",
+ "topics": [
+ "dataset",
+ "earth science",
+ "geography"
+ ]
+ },
+ {
+ "uid": "gitlab/andresruiz/Sparkling",
+ "url": "https://gitlab.com/andresruiz/Sparkling",
+ "rel": "/software/repository/gitlab/andresruiz/Sparkling",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/58179358/logo.png",
+ "description": "Spherical cosmic voids finder.",
"topics": []
},
{
@@ -662,19 +748,27 @@
]
},
{
- "uid": "gitlab/ProjectRHEA/flowsolverrhea",
- "url": "https://gitlab.com/ProjectRHEA/flowsolverrhea",
- "rel": "/software/repository/gitlab/ProjectRHEA/flowsolverrhea",
+ "uid": "gitlab/rki_bioinformatics/IDeFIX",
+ "url": "https://gitlab.com/rki_bioinformatics/IDeFIX",
+ "rel": "/software/repository/gitlab/rki_bioinformatics/IDeFIX",
"avatar": "https://gitlab.comNone",
- "description": "RHEA: an open-source Reproducible and Hybrid-architecture flow solver Engineered for Academia",
+ "description": "Index checking for improved demultiplexing of NGS data",
"topics": []
},
{
- "uid": "gitlab/octopus-code/octopus",
- "url": "https://gitlab.com/octopus-code/octopus",
- "rel": "/software/repository/gitlab/octopus-code/octopus",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/2018405/octopus.png",
- "description": "Real-space Time-Dependent Density Functional Theory code",
+ "uid": "gitlab/rki_bioinformatics/HiLive2",
+ "url": "https://gitlab.com/rki_bioinformatics/HiLive2",
+ "rel": "/software/repository/gitlab/rki_bioinformatics/HiLive2",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/7428486/hilive2_logo.png",
+ "description": "HiLive2 is a read mapping tool that maps Illumina HiSeq (or comparable) reads right in the moment when they are produced. Please create issues for HiLive2 at https://gitlab.com/lokat/HiLive2.",
+ "topics": []
+ },
+ {
+ "uid": "gitlab/rki_bioinformatics/purple",
+ "url": "https://gitlab.com/rki_bioinformatics/purple",
+ "rel": "/software/repository/gitlab/rki_bioinformatics/purple",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/11392663/Purple_128.png",
+ "description": "Picking Unique Relevant Peptides for viraL Experiments\r\n\r\nAuthors: Johanna Lechner [@LechnerJ], Pauline Hiortand Felix Hartkopf [@HartkopfF]\r\n\r\nSupport: https://gitlab.com/HartkopfF/Purple\r\n\r\nDownload: https://gitlab.com/HartkopfF/Purple/releases",
"topics": []
},
{
@@ -690,53 +784,66 @@
]
},
{
- "uid": "gitlab/pvst/asi",
- "url": "https://gitlab.com/pvst/asi",
- "rel": "/software/repository/gitlab/pvst/asi",
- "avatar": "https://gitlab.comNone",
- "description": "Atomic Simulations Interface",
- "topics": []
- },
- {
- "uid": "gitlab/pyFBS/pyFBS",
- "url": "https://gitlab.com/pyFBS/pyFBS",
- "rel": "/software/repository/gitlab/pyFBS/pyFBS",
+ "uid": "gitlab/sevecekp/sph",
+ "url": "https://gitlab.com/sevecekp/sph",
+ "rel": "/software/repository/gitlab/sevecekp/sph",
"avatar": "https://gitlab.comNone",
- "description": "A Python package for Frequency Based Substructuring and Transfer Path Analysis",
+ "description": "Library and graphical tools for running SPH and N-body simulations.",
"topics": [
- "3D Viewer",
- "FRF synthetisation",
- "MCK model",
- "System Equivalent Modal Mixing",
- "Virtual Point Transformation"
+ "SPH",
+ "nbody",
+ "opensph",
+ "simulation"
]
},
{
- "uid": "gitlab/sunpeek/sunpeek",
- "url": "https://gitlab.com/sunpeek/sunpeek",
- "rel": "/software/repository/gitlab/sunpeek/sunpeek",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/43333900/favicon.png",
- "description": "Please see the README for an overview of the project, or here for software documentation: https://docs.sunpeek.org",
+ "uid": "gitlab/cmbm-ethz/miop",
+ "url": "https://gitlab.com/miop-project/miop",
+ "rel": "/software/repository/gitlab/cmbm-ethz/miop",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/68557472/po.png",
+ "description": "A modular pipeline for 3D reconstruction from SEM images",
"topics": []
},
{
- "uid": "gitlab/LouisLab/PiVR",
- "url": "https://gitlab.com/LouisLab/pivr",
- "rel": "/software/repository/gitlab/LouisLab/PiVR",
- "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/9212004/PiVR_logo.png",
- "description": "PiVR has been developed to track a variety of animals in real time and present them with light stimuli. Manual can be found at www.PiVR.org, scientific publication at https://doi.org/10.1371/journal.pbio.3000712\r\n",
+ "uid": "gitlab/ezlab/busco",
+ "url": "https://gitlab.com/ezlab/busco",
+ "rel": "/software/repository/gitlab/ezlab/busco",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/1544766/Screen_Shot_2019-11-26_at_17.26.57.png",
+ "description": "Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs (BUSCO)",
"topics": []
},
{
- "uid": "gitlab/picos-api/picos",
- "url": "https://gitlab.com/picos-api/picos",
- "rel": "/software/repository/gitlab/picos-api/picos",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/7353603/logo.png",
- "description": "A Python interface to conic optimization solvers.",
+ "uid": "gitlab/geekysquirrel/bigx",
+ "url": "https://gitlab.com/geekysquirrel/bigx",
+ "rel": "/software/repository/gitlab/geekysquirrel/bigx",
+ "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/10925765/bigx.png",
+ "description": "A data visualisation tool for geographic datasets",
+ "topics": []
+ },
+ {
+ "uid": "gitlab/multigris/mgris",
+ "url": "https://gitlab.com/multigris/mgris",
+ "rel": "/software/repository/gitlab/multigris/mgris",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/34419388/multigris_small.png",
+ "description": "MULTIGRIS (\"mgris\") is a Bayesian multi-dimensional grid search using PyMC to extract the posterior distributions of primary grid parameters and predict unobserved parameters/observables.",
"topics": [
- "math",
- "optimization",
- "python"
+ "Bayesian statistics",
+ "astrophysics",
+ "grid",
+ "mcmc",
+ "modelling"
+ ]
+ },
+ {
+ "uid": "gitlab/Molcas/OpenMolcas",
+ "url": "https://gitlab.com/Molcas/OpenMolcas",
+ "rel": "/software/repository/gitlab/Molcas/OpenMolcas",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/3536517/logo_open_flat.png",
+ "description": "OpenMolcas is a quantum chemistry software package.\r\n\r\nThe key feature of OpenMolcas is the multiconfigurational approach to the electronic structure.",
+ "topics": [
+ "chemistry",
+ "physics",
+ "quantum"
]
},
{
@@ -748,113 +855,134 @@
"topics": []
},
{
- "uid": "gitlab/uit-sfb/metapipe",
- "url": "https://gitlab.com/uit-sfb/metapipe",
- "rel": "/software/repository/gitlab/uit-sfb/metapipe",
+ "uid": "gitlab/programgreg/tagginglatencyestimator",
+ "url": "https://gitlab.com/programgreg/tagginglatencyestimator",
+ "rel": "/software/repository/gitlab/programgreg/tagginglatencyestimator",
"avatar": "https://gitlab.comNone",
- "description": "Metapipe based on Nextflow",
+ "description": "Software to estimate the latency of the tagging process.",
"topics": []
},
{
- "uid": "gitlab/thartwig/asloth",
- "url": "https://gitlab.com/thartwig/asloth",
- "rel": "/software/repository/gitlab/thartwig/asloth",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/35049365/ASLOTH_logo_official.jpg",
- "description": "Semi-analytical model A-SLOTH (Ancient Stars and Local Observables by Tracing Halos)",
- "topics": []
+ "uid": "gitlab/chaver/choco-mining",
+ "url": "https://gitlab.com/chaver/choco-mining",
+ "rel": "/software/repository/gitlab/chaver/choco-mining",
+ "avatar": "https://gitlab.comNone",
+ "description": "Data mining with Choco solver",
+ "topics": [
+ "Association Rules Mining",
+ "Choco solver",
+ "Constraint Programming",
+ "Pareto",
+ "Skypattern",
+ "data mining",
+ "pattern mining"
+ ]
},
{
- "uid": "gitlab/groimp-plugins/Pointcloud",
- "url": "https://gitlab.com/groimp-plugins/pointcloud",
- "rel": "/software/repository/gitlab/groimp-plugins/Pointcloud",
+ "uid": "gitlab/metafundev/metafun",
+ "url": "https://gitlab.com/metafundev/metafun",
+ "rel": "/software/repository/gitlab/metafundev/metafun",
"avatar": "https://gitlab.comNone",
- "description": null,
+ "description": "",
"topics": []
},
{
- "uid": "gitlab/souvlaki/thalassa",
- "url": "https://gitlab.com/souvlaki/thalassa",
- "rel": "/software/repository/gitlab/souvlaki/thalassa",
- "avatar": "https://gitlab.comNone",
- "description": null,
+ "uid": "gitlab/polmag/P-CORONA",
+ "url": "https://gitlab.com/polmag/P-CORONA",
+ "rel": "/software/repository/gitlab/polmag/P-CORONA",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/33519237/out.png",
+ "description": "P-CORONA is a novel computer program for modeling the intensity and polarization of coronal atomic lines in any given three dimensional (3D) model of the solar corona.",
"topics": []
},
{
- "uid": "gitlab/aroffringa/aoflagger",
- "url": "https://gitlab.com/aroffringa/aoflagger",
- "rel": "/software/repository/gitlab/aroffringa/aoflagger",
- "avatar": "https://gitlab.comNone",
- "description": "The AOFlagger is a tool that can find and remove radio-frequency interference (RFI) in radio astronomical observations. It can make use of Lua scripts to make flagging strategies flexible, and the tools are applicable to a wide set of telescopes.",
+ "uid": "gitlab/polmag/PORTA",
+ "url": "https://gitlab.com/polmag/PORTA",
+ "rel": "/software/repository/gitlab/polmag/PORTA",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/12210898/porta-logo-bw.png",
+ "description": "PORTA: A three-dimensional multilevel radiative transfer code for modeling the intensity and polarization of spectral lines with massively parallel computers",
"topics": []
},
{
- "uid": "gitlab/aroffringa/wsclean",
- "url": "https://gitlab.com/aroffringa/wsclean",
- "rel": "/software/repository/gitlab/aroffringa/wsclean",
+ "uid": "gitlab/andrea-tango/ficos",
+ "url": "https://gitlab.com/andrea-tango/ficos",
+ "rel": "/software/repository/gitlab/andrea-tango/ficos",
"avatar": "https://gitlab.comNone",
- "description": "WSClean (w-stacking clean) is a fast generic widefield imager. It implements several gridding algorithms and offers fully-automated multi-scale multi-frequency deconvolution. Manual: https://wsclean.readthedocs.io/",
+ "description": "",
"topics": []
},
{
- "uid": "gitlab/robizzard/libcdict",
- "url": "https://gitlab.com/rob.izzard/libcdict",
- "rel": "/software/repository/gitlab/robizzard/libcdict",
+ "uid": "gitlab/dglaeser/fieldcompare",
+ "url": "https://gitlab.com/dglaeser/fieldcompare",
+ "rel": "/software/repository/gitlab/dglaeser/fieldcompare",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/32838547/fcompare_logo.png",
+ "description": "Python package with command-line interface to compare field data",
+ "topics": []
+ },
+ {
+ "uid": "gitlab/cracklet/cracklet",
+ "url": "https://gitlab.com/cracklet/cracklet",
+ "rel": "/software/repository/gitlab/cracklet/cracklet",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/25188173/logo_large.png",
+ "description": "cRacklet is a C++ boundary element library based on a spectral formulation of the elastodynamic wave equations in continuum solids.",
+ "topics": []
+ },
+ {
+ "uid": "gitlab/pvst/asi",
+ "url": "https://gitlab.com/pvst/asi",
+ "rel": "/software/repository/gitlab/pvst/asi",
"avatar": "https://gitlab.comNone",
- "description": "A generic associative array, also know as dictionary or hash, library in C, based on uthash and extended to be more user friendly and include integration features such as JSON output.",
+ "description": "Atomic Simulations Interface",
"topics": []
},
{
- "uid": "gitlab/libreumg/dataquier",
- "url": "https://gitlab.com/libreumg/dataquier",
- "rel": "/software/repository/gitlab/libreumg/dataquier",
- "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/14144828/logo_ship.png",
- "description": "",
+ "uid": "gitlab/ComputationalScience/idinn",
+ "url": "https://gitlab.com/ComputationalScience/idinn",
+ "rel": "/software/repository/gitlab/ComputationalScience/idinn",
+ "avatar": "https://gitlab.comNone",
+ "description": "Inventory dynamics\u2013informed neural networks for solving single-sourcing and dual-sourcing problems.",
"topics": []
},
{
- "uid": "gitlab/emd-dev/emd",
- "url": "https://gitlab.com/emd-dev/emd",
- "rel": "/software/repository/gitlab/emd-dev/emd",
+ "uid": "gitlab/wpettersson/kep_solver",
+ "url": "https://gitlab.com/wpettersson/kep_solver",
+ "rel": "/software/repository/gitlab/wpettersson/kep_solver",
"avatar": "https://gitlab.comNone",
- "description": "Empirical Mode Decomposition in Python\r\n\r\n",
+ "description": "A Python package for reading and solving single instances of kidney exchange problems. ",
"topics": []
},
{
- "uid": "gitlab/random-quintessence/random-quintessence",
- "url": "https://gitlab.com/random-quintessence/random-quintessence",
- "rel": "/software/repository/gitlab/random-quintessence/random-quintessence",
+ "uid": "gitlab/joseaher/astroplotlib",
+ "url": "https://gitlab.com/joseaher/astroplotlib",
+ "rel": "/software/repository/gitlab/joseaher/astroplotlib",
"avatar": "https://gitlab.comNone",
"description": null,
"topics": []
},
{
- "uid": "gitlab/loic.cg.rossi/pymiedap",
- "url": "https://gitlab.com/loic.cg.rossi/pymiedap",
- "rel": "/software/repository/gitlab/loic.cg.rossi/pymiedap",
- "avatar": "https://gitlab.comNone",
- "description": "PyMieDAP = Python Mie Doubling Adding Program. A radiative transfer code with polarization.",
- "topics": [
- "astronomy",
- "atmospheres",
- "polarization",
- "radiative transfer"
- ]
+ "uid": "gitlab/morikawa-lab-osakau/vibir-parallel-compute",
+ "url": "https://gitlab.com/morikawa-lab-osakau/vibir-parallel-compute",
+ "rel": "/software/repository/gitlab/morikawa-lab-osakau/vibir-parallel-compute",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/58824042/logo.png",
+ "description": "A HPC-ready parallelized implementation of Vibration and Infrared computations from DFT simulations.\r\n\r\nhttps://morikawa-lab-osakau.gitlab.io/vibir-parallel-compute",
+ "topics": []
},
{
- "uid": "gitlab/cmbm-ethz/miop",
- "url": "https://gitlab.com/miop-project/miop",
- "rel": "/software/repository/gitlab/cmbm-ethz/miop",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/68557472/po.png",
- "description": "A modular pipeline for 3D reconstruction from SEM images",
+ "uid": "gitlab/dalton/dalton",
+ "url": "https://gitlab.com/dalton/dalton",
+ "rel": "/software/repository/gitlab/dalton/dalton",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/4007652/pRZ6xe8j_400x400.jpg",
+ "description": "Public Dalton source code repository.",
"topics": []
},
{
- "uid": "gitlab/rahmannlab/episegmix",
- "url": "https://gitlab.com/rahmannlab/episegmix",
- "rel": "/software/repository/gitlab/rahmannlab/episegmix",
+ "uid": "gitlab/gpagano/lensinggw",
+ "url": "https://gitlab.com/gpagano/lensinggw",
+ "rel": "/software/repository/gitlab/gpagano/lensinggw",
"avatar": "https://gitlab.comNone",
"description": null,
- "topics": []
+ "topics": [
+ "lensing of gravitational waves"
+ ]
},
{
"uid": "gitlab/astron-idg/idg",
@@ -865,153 +993,160 @@
"topics": []
},
{
- "uid": "gitlab/burstcube/mhealpy",
- "url": "https://gitlab.com/burstcube/mhealpy",
- "rel": "/software/repository/gitlab/burstcube/mhealpy",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/21249835/Screen_Shot_2020-09-20_at_3.59.09_PM.png",
- "description": null,
- "topics": []
+ "uid": "gitlab/jason-rumengan/pyarma",
+ "url": "https://gitlab.com/jason-rumengan/pyarma",
+ "rel": "/software/repository/gitlab/jason-rumengan/pyarma",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/22728285/pyarma_logo1.png",
+ "description": "PyArmadillo - linear algebra library for Python with MATLAB-like syntax - https://pyarma.sourceforge.io",
+ "topics": [
+ "BLAS",
+ "C++",
+ "LAPACK",
+ "Linear Algebra",
+ "MATLAB",
+ "Python",
+ "Scientifc Computing"
+ ]
},
{
- "uid": "gitlab/pythia-uq/pythia",
- "url": "https://gitlab.com/pythia-uq/pythia",
- "rel": "/software/repository/gitlab/pythia-uq/pythia",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/45854627/logo_small.png",
- "description": "PyThia Uncertainty Quantification Toolbox",
+ "uid": "gitlab/djsmithbham/cnearest",
+ "url": "https://gitlab.com/djsmithbham/cnearest",
+ "rel": "/software/repository/gitlab/djsmithbham/cnearest",
+ "avatar": "https://gitlab.comNone",
+ "description": "C++ nearest neighbour regularized stokeslets",
"topics": []
},
{
- "uid": "gitlab/gmamon/MAMPOSSt",
- "url": "https://gitlab.com/gmamon/MAMPOSSt",
- "rel": "/software/repository/gitlab/gmamon/MAMPOSSt",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/6066861/MAMPOSSt_logo.png",
- "description": null,
- "topics": [
- "Mass/orbit modeling"
- ]
- },
- {
- "uid": "gitlab/treangenlab/emu",
- "url": "https://gitlab.com/treangenlab/emu",
- "rel": "/software/repository/gitlab/treangenlab/emu",
- "avatar": "https://gitlab.com/treangenlab/emu/-/avatar",
- "description": "EMu is a relative abundance estimator for 16S genomic sequences",
+ "uid": "gitlab/astrogal/slideParam",
+ "url": "https://gitlab.com/astrogal/slideParam",
+ "rel": "/software/repository/gitlab/astrogal/slideParam",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/76146374/sliceParam_logo.png",
+ "description": "2D galactic data visualization tool in python",
"topics": []
},
{
- "uid": "gitlab/treangenlab/vulcan",
- "url": "https://gitlab.com/treangenlab/vulcan",
- "rel": "/software/repository/gitlab/treangenlab/vulcan",
- "avatar": "https://gitlab.comNone",
- "description": "",
+ "uid": "gitlab/vibes-developers/vibes",
+ "url": "https://gitlab.com/vibes-developers/vibes",
+ "rel": "/software/repository/gitlab/vibes-developers/vibes",
+ "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/19053725/FV_green.png",
+ "description": "[FHI-vibes](https://vibes-developers.gitlab.io/vibes/): Vibrational simulations with python powered by ASE and FHI-aims.",
"topics": []
},
{
- "uid": "gitlab/metafundev/metafun",
- "url": "https://gitlab.com/metafundev/metafun",
- "rel": "/software/repository/gitlab/metafundev/metafun",
+ "uid": "gitlab/jerrytheo16/exoplanet",
+ "url": "https://gitlab.com/jerrytheo16/exoplanet",
+ "rel": "/software/repository/gitlab/jerrytheo16/exoplanet",
"avatar": "https://gitlab.comNone",
- "description": "",
+ "description": "Desktop-based application to aid in constructing a machine learning model for predictive analysis. The application further allows the model to be evaluated through statistical results and interactive graphs.",
"topics": []
},
{
- "uid": "gitlab/german.tischler/libmaus2",
- "url": "https://gitlab.com/german.tischler/libmaus2",
- "rel": "/software/repository/gitlab/german.tischler/libmaus2",
- "avatar": "https://gitlab.comNone",
- "description": "collection of data structures and algorithms",
+ "uid": "gitlab/eduardo-vitral/balrogo",
+ "url": "https://gitlab.com/eduardo-vitral/balrogo",
+ "rel": "/software/repository/gitlab/eduardo-vitral/balrogo",
+ "avatar": "https://gitlab.com/eduardo-vitral/balrogo/-/avatar",
+ "description": "Bayesian Astrometric Likelihood Recovery of Galactic Objects",
"topics": []
},
{
- "uid": "gitlab/german.tischler/biobambam2",
- "url": "https://gitlab.com/german.tischler/biobambam2",
- "rel": "/software/repository/gitlab/german.tischler/biobambam2",
- "avatar": "https://gitlab.comNone",
- "description": "Tools for early stage alignment file processing",
+ "uid": "gitlab/sunpeek/sunpeek",
+ "url": "https://gitlab.com/sunpeek/sunpeek",
+ "rel": "/software/repository/gitlab/sunpeek/sunpeek",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/43333900/favicon.png",
+ "description": "Please see the README for an overview of the project, or here for software documentation: https://docs.sunpeek.org",
"topics": []
},
{
- "uid": "gitlab/dsbowen/conditional-inference",
- "url": "https://gitlab.com/dsbowen/conditional-inference",
- "rel": "/software/repository/gitlab/dsbowen/conditional-inference",
+ "uid": "gitlab/fibreglass/pivc",
+ "url": "https://gitlab.com/fibreglass/pivc",
+ "rel": "/software/repository/gitlab/fibreglass/pivc",
"avatar": "https://gitlab.comNone",
"description": null,
"topics": []
},
{
- "uid": "gitlab/ComputationalScience/idinn",
- "url": "https://gitlab.com/ComputationalScience/idinn",
- "rel": "/software/repository/gitlab/ComputationalScience/idinn",
+ "uid": "gitlab/uit-sfb/metapipe",
+ "url": "https://gitlab.com/uit-sfb/metapipe",
+ "rel": "/software/repository/gitlab/uit-sfb/metapipe",
"avatar": "https://gitlab.comNone",
- "description": "Inventory dynamics\u2013informed neural networks for solving single-sourcing and dual-sourcing problems.",
+ "description": "Metapipe based on Nextflow",
"topics": []
},
{
- "uid": "gitlab/polmag/PORTA",
- "url": "https://gitlab.com/polmag/PORTA",
- "rel": "/software/repository/gitlab/polmag/PORTA",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/12210898/porta-logo-bw.png",
- "description": "PORTA: A three-dimensional multilevel radiative transfer code for modeling the intensity and polarization of spectral lines with massively parallel computers",
+ "uid": "gitlab/thartwig/asloth",
+ "url": "https://gitlab.com/thartwig/asloth",
+ "rel": "/software/repository/gitlab/thartwig/asloth",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/35049365/ASLOTH_logo_official.jpg",
+ "description": "Semi-analytical model A-SLOTH (Ancient Stars and Local Observables by Tracing Halos)",
"topics": []
},
{
- "uid": "gitlab/polmag/P-CORONA",
- "url": "https://gitlab.com/polmag/P-CORONA",
- "rel": "/software/repository/gitlab/polmag/P-CORONA",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/33519237/out.png",
- "description": "P-CORONA is a novel computer program for modeling the intensity and polarization of coronal atomic lines in any given three dimensional (3D) model of the solar corona.",
- "topics": []
+ "uid": "gitlab/picos-api/picos",
+ "url": "https://gitlab.com/picos-api/picos",
+ "rel": "/software/repository/gitlab/picos-api/picos",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/7353603/logo.png",
+ "description": "A Python interface to conic optimization solvers.",
+ "topics": [
+ "math",
+ "optimization",
+ "python"
+ ]
},
{
- "uid": "gitlab/aceteam.kaist/ACE-Molecule",
- "url": "https://gitlab.com/aceteam.kaist/ACE-Molecule",
- "rel": "/software/repository/gitlab/aceteam.kaist/ACE-Molecule",
+ "uid": "gitlab/loic.cg.rossi/pymiedap",
+ "url": "https://gitlab.com/loic.cg.rossi/pymiedap",
+ "rel": "/software/repository/gitlab/loic.cg.rossi/pymiedap",
"avatar": "https://gitlab.comNone",
- "description": "GitLab repository for ACE-Molecule.",
- "topics": []
- },
- {
- "uid": "gitlab/elsi_project/elsi_interface",
- "url": "https://gitlab.com/elsi_project/elsi_interface",
- "rel": "/software/repository/gitlab/elsi_project/elsi_interface",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/20804728/elsi_200629.png",
- "description": "ELSI: A software interface designed for electronic structure codes to connect with ELPA, libOMM, PEXSI, EigenExa, SLEPc, NTPoly, BSEPACK, LAPACK, MAGMA, and other solver libraries.",
- "topics": []
+ "description": "PyMieDAP = Python Mie Doubling Adding Program. A radiative transfer code with polarization.",
+ "topics": [
+ "astronomy",
+ "atmospheres",
+ "polarization",
+ "radiative transfer"
+ ]
},
{
- "uid": "gitlab/permafrostnet/teaspoon",
- "url": "https://gitlab.com/permafrostnet/teaspoon",
- "rel": "/software/repository/gitlab/permafrostnet/teaspoon",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/35916406/teaspooncolor_p.png",
- "description": "Python for permafrost temperature data",
+ "uid": "gitlab/davidwoodburn/r3f",
+ "url": "https://gitlab.com/davidwoodburn/r3f",
+ "rel": "/software/repository/gitlab/davidwoodburn/r3f",
+ "avatar": "https://gitlab.comNone",
+ "description": "A library for three-dimensional, reference-frame conversions",
"topics": [
- "dataset",
- "earth science",
- "geography"
+ "ECEF",
+ "Geodetic",
+ "Inertial measurement unit",
+ "navigation",
+ "reference frames",
+ "rotation"
]
},
{
- "uid": "gitlab/djsmithbham/cnearest",
- "url": "https://gitlab.com/djsmithbham/cnearest",
- "rel": "/software/repository/gitlab/djsmithbham/cnearest",
+ "uid": "gitlab/davidwoodburn/itrm",
+ "url": "https://gitlab.com/davidwoodburn/itrm",
+ "rel": "/software/repository/gitlab/davidwoodburn/itrm",
"avatar": "https://gitlab.comNone",
- "description": "C++ nearest neighbour regularized stokeslets",
- "topics": []
+ "description": "Interactive Terminal Utilities",
+ "topics": [
+ "ascii-art",
+ "interactive",
+ "plotting",
+ "terminal"
+ ]
},
{
- "uid": "gitlab/chrjan/seq-seq-pan",
- "url": "https://gitlab.com/chrjan/seq-seq-pan",
- "rel": "/software/repository/gitlab/chrjan/seq-seq-pan",
+ "uid": "gitlab/habermann_lab/phasik",
+ "url": "https://gitlab.com/habermann_lab/phasik",
+ "rel": "/software/repository/gitlab/habermann_lab/phasik",
"avatar": "https://gitlab.comNone",
- "description": "seq-seq-pan is a workflow for the SEQuential alignment of SEQuences to build a PAN-genome data structure and a whole-genome-alignment.",
+ "description": "Scientific tools for extracting cyclic data via hierarchical clustering",
"topics": []
},
{
- "uid": "gitlab/programgreg/tagginglatencyestimator",
- "url": "https://gitlab.com/programgreg/tagginglatencyestimator",
- "rel": "/software/repository/gitlab/programgreg/tagginglatencyestimator",
+ "uid": "gitlab/moerman1/fhi-cc4s",
+ "url": "https://gitlab.com/moerman1/fhi-cc4s",
+ "rel": "/software/repository/gitlab/moerman1/fhi-cc4s",
"avatar": "https://gitlab.comNone",
- "description": "Software to estimate the latency of the tagging process.",
+ "description": "This project constitutes the interface between the Fritz Haber Institute ab initio molecular simulations (FHI-aims) and the Coupled Cluster for Solids (CC4S) code developed by Felix Hummel and Adreas Grueneis at the TU Wien. \r\n",
"topics": []
},
{
@@ -1023,95 +1158,74 @@
"topics": []
},
{
- "uid": "gitlab/sevecekp/sph",
- "url": "https://gitlab.com/sevecekp/sph",
- "rel": "/software/repository/gitlab/sevecekp/sph",
+ "uid": "gitlab/sigcorr/sigcorr",
+ "url": "https://gitlab.com/sigcorr/sigcorr",
+ "rel": "/software/repository/gitlab/sigcorr/sigcorr",
"avatar": "https://gitlab.comNone",
- "description": "Library and graphical tools for running SPH and N-body simulations.",
+ "description": null,
+ "topics": []
+ },
+ {
+ "uid": "gitlab/jesseds/apav",
+ "url": "https://gitlab.com/jesseds/apav",
+ "rel": "/software/repository/gitlab/jesseds/apav",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/10414782/g39334.png",
+ "description": "APAV (Atom Probe Analysis and Visualization) is a Python library for the analysis and\r\nvisualization of atom probe tomography experiments.",
"topics": [
- "SPH",
- "nbody",
- "opensph",
- "simulation"
+ "Atom Probe",
+ "Field Evaporation",
+ "data analysis",
+ "science",
+ "tomography"
]
},
{
- "uid": "gitlab/RKIBioinformaticsPipelines/QCumber",
- "url": "https://gitlab.com/RKIBioinformaticsPipelines/QCumber",
- "rel": "/software/repository/gitlab/RKIBioinformaticsPipelines/QCumber",
- "avatar": "https://gitlab.comNone",
- "description": "quality control of genomic sequences",
+ "uid": "gitlab/magnumpi/magnumpi",
+ "url": "https://gitlab.com/magnumpi/magnumpi",
+ "rel": "/software/repository/gitlab/magnumpi/magnumpi",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/8913469/Tom_20Selleck_20as_20Thomas_20Magnum_20P.I._large.jpg",
+ "description": "Potential Integrator",
"topics": []
},
{
- "uid": "gitlab/fibreglass/pivc",
- "url": "https://gitlab.com/fibreglass/pivc",
- "rel": "/software/repository/gitlab/fibreglass/pivc",
+ "uid": "gitlab/imoralc/malu-ifs-visualization-tool",
+ "url": "https://gitlab.com/imoralc/malu-ifs-visualization-tool",
+ "rel": "/software/repository/gitlab/imoralc/malu-ifs-visualization-tool",
"avatar": "https://gitlab.comNone",
"description": null,
"topics": []
},
{
- "uid": "gitlab/etienne.behar/menura",
- "url": "https://gitlab.com/etienne.behar/menura",
- "rel": "/software/repository/gitlab/etienne.behar/menura",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/24686946/menura_logo2_thumb.png",
- "description": "Menura is a space plasma simulation code. It is built around a hybrid Particle In Cell (PIC) solver, running on Graphics Processing Units. More informations on https://menura.readthedocs.io",
- "topics": [
- "plasma",
- "simulation",
- "solar wind",
- "turbulence"
- ]
+ "uid": "gitlab/octopus-code/octopus",
+ "url": "https://gitlab.com/octopus-code/octopus",
+ "rel": "/software/repository/gitlab/octopus-code/octopus",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/2018405/octopus.png",
+ "description": "Real-space Time-Dependent Density Functional Theory code",
+ "topics": []
},
{
- "uid": "gitlab/chjordan/sslf",
- "url": "https://gitlab.com/chjordan/sslf",
- "rel": "/software/repository/gitlab/chjordan/sslf",
+ "uid": "gitlab/dsbowen/conditional-inference",
+ "url": "https://gitlab.com/dsbowen/conditional-inference",
+ "rel": "/software/repository/gitlab/dsbowen/conditional-inference",
"avatar": "https://gitlab.comNone",
- "description": "Simple Spectral Line Finder",
+ "description": null,
"topics": []
},
{
- "uid": "gitlab/AstroVian/bmarxiv",
- "url": "https://gitlab.com/AstroVian/bmarxiv",
- "rel": "/software/repository/gitlab/AstroVian/bmarxiv",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/28500894/PAph_dog.gif",
+ "uid": "gitlab/EliseLei/easychem",
+ "url": "https://gitlab.com/EliseLei/easychem",
+ "rel": "/software/repository/gitlab/EliseLei/easychem",
+ "avatar": "https://gitlab.com/uploads/-/system/project/avatar/39021845/easyCHEM_logo_light.png",
"description": null,
"topics": []
},
{
- "uid": "gitlab/esa/pyxel",
- "url": "https://gitlab.com/esa/pyxel",
- "rel": "/software/repository/gitlab/esa/pyxel",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/10410719/square_logo.png",
- "description": "Pyxel is a general detector simulation framework. An easy-to-use framework that can simulate a variety of imaging detector effects combined on images (e.g. radiation and optical effects, noises) made by CCD or CMOS-based detectors.",
- "topics": [
- "astronomy",
- "camera",
- "ccd",
- "cmos",
- "detector",
- "imaging",
- "mct",
- "pixel",
- "python",
- "simulation"
- ]
- },
- {
- "uid": "gitlab/multigris/mgris",
- "url": "https://gitlab.com/multigris/mgris",
- "rel": "/software/repository/gitlab/multigris/mgris",
- "avatar": "https://gitlab.com/uploads/-/system/project/avatar/34419388/multigris_small.png",
- "description": "MULTIGRIS (\"mgris\") is a Bayesian multi-dimensional grid search using PyMC to extract the posterior distributions of primary grid parameters and predict unobserved parameters/observables.",
- "topics": [
- "Bayesian statistics",
- "astrophysics",
- "grid",
- "mcmc",
- "modelling"
- ]
+ "uid": "gitlab/LouisLab/PiVR",
+ "url": "https://gitlab.com/LouisLab/pivr",
+ "rel": "/software/repository/gitlab/LouisLab/PiVR",
+ "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/9212004/PiVR_logo.png",
+ "description": "PiVR has been developed to track a variety of animals in real time and present them with light stimuli. Manual can be found at www.PiVR.org, scientific publication at https://doi.org/10.1371/journal.pbio.3000712\r\n",
+ "topics": []
},
{
"uid": "gitlab/remikz/nccmp",
@@ -1122,675 +1236,795 @@
"topics": []
},
{
- "uid": "gitlab/vibes-developers/vibes",
- "url": "https://gitlab.com/vibes-developers/vibes",
- "rel": "/software/repository/gitlab/vibes-developers/vibes",
- "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/19053725/FV_green.png",
- "description": "[FHI-vibes](https://vibes-developers.gitlab.io/vibes/): Vibrational simulations with python powered by ASE and FHI-aims.",
- "topics": []
- },
- {
- "uid": "gitlab/vincent-sater/umigen",
- "url": "https://gitlab.com/vincent-sater/umigen",
- "rel": "/software/repository/gitlab/vincent-sater/umigen",
+ "uid": "gitlab/german.tischler/libmaus2",
+ "url": "https://gitlab.com/german.tischler/libmaus2",
+ "rel": "/software/repository/gitlab/german.tischler/libmaus2",
"avatar": "https://gitlab.comNone",
- "description": "UMI-based reads simulator for variant calling evaluation in paired-end sequencing NGS libraries",
+ "description": "collection of data structures and algorithms",
"topics": []
},
{
- "uid": "gitlab/imoralc/malu-ifs-visualization-tool",
- "url": "https://gitlab.com/imoralc/malu-ifs-visualization-tool",
- "rel": "/software/repository/gitlab/imoralc/malu-ifs-visualization-tool",
+ "uid": "gitlab/german.tischler/biobambam2",
+ "url": "https://gitlab.com/german.tischler/biobambam2",
+ "rel": "/software/repository/gitlab/german.tischler/biobambam2",
"avatar": "https://gitlab.comNone",
- "description": null,
+ "description": "Tools for early stage alignment file processing",
"topics": []
},
{
- "uid": "gitlab/gims-developers/gims",
- "url": "https://gitlab.com/gims-developers/gims",
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"topics": [
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{
@@ -1807,16107 +2041,15708 @@
]
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+ "description": "Chromosome visualization for the web",
+ "topics": [
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+ "genomics",
+ "cytogenetics",
+ "karyotype",
+ "cancer-genomics",
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+ "personal-genomics"
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+ "phylogenetics",
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+ "avatar": "https://avatars.githubusercontent.com/u/349384?v=4",
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+ "description": "An alternative to MCMC for rapid analysis of models",
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- "supernovae",
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+ "description": "Pangolin is a deep-learning method for predicting splice site strengths.",
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+ "description": "Visual analysis and diagnostic tools to facilitate machine learning model selection.",
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+ "vasp",
+ "color-scheme",
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+ "visualization"
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+ "description": "Identifying Cell-states Across Treatments",
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+ "machine-learning",
+ "self-supervised-learning",
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+ "single-cell",
+ "single-cell-analysis",
+ "single-cell-rna-seq"
+ ]
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+ "description": "Simulation and optimization of neural circuits for MEG/EEG source estimates",
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+ "meg",
+ "computational-modeling"
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- "metabolomics",
- "ontology",
- "owl-ontology",
- "plants",
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+ "pulsar",
+ "atnf",
+ "catalogue",
+ "python"
]
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- "description": "R package for Google Document AI ",
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- "ocr",
- "r",
- "google-cloud"
+ "integral",
+ "gsl",
+ "gsl-functions",
+ "python",
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]
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- "fair-for-software",
- "reproducible-research",
- "research-software-engineering",
- "discoverability"
+ "atomic-level-populations",
+ "line-emissivities",
+ "statistical-equilibrium",
+ "equib",
+ "fortran",
+ "electron-density",
+ "electron-temperature"
]
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- "topics": []
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+ "avatar": "https://avatars3.githubusercontent.com/u/24842786?v=4",
+ "description": "pyEQUIB - Python Package for Plasma Diagnostics and Abundance Analysis",
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+ "atomic-level-populations",
+ "chemical-elements",
+ "line-emissivities",
+ "statistical-equilibrium",
+ "python",
+ "pyequib"
+ ]
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- "mass-spectrometry",
- "computational-chemistry",
- "molecular-dynamics",
- "computational-mass-spectrometry"
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+ "mcmc",
+ "r"
]
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- "python",
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+ "eeg",
+ "electrophysiology",
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+ "neuroscience",
+ "oscillations",
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- "microbiome",
- "sequence",
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+ "radio-astronomy",
+ "satellites",
+ "telescope",
+ "murchison-widefield-array"
]
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- "bioinformatics",
- "fastq",
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- "microbiome",
- "amplicon",
- "sequence-alignment",
- "clustering",
- "search"
+ "microscopy",
+ "time-series-analysis",
+ "analysis",
+ "vector-analysis",
+ "microscopy-data",
+ "cell-dynamics"
]
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+ "registry",
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+ "cloud-native",
+ "containers",
+ "docker",
+ "kubernetes",
+ "cncf-project",
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+ "hacktoberfest"
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+ "milky-way",
+ "spiralmap"
]
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+ "description": "Full Frame Fotometry from the Kepler Full Frame Images",
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+ "avatar": "https://avatars.githubusercontent.com/u/50912803?v=4",
+ "description": "Your solution for stiffness problems",
"topics": []
},
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+ "description": "QR based Principal Components Analysis",
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- "pytorch",
- "computer-vision",
- "machine-learning",
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+ "r",
+ "dimensionality-reduction"
]
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- "description": "Python application template with automated QA and Docker image publishing",
+ "uid": "github/gouverneurp/eVAS",
+ "url": "https://github.com/gouverneurp/eVAS",
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- "file-upload",
- "filepond",
- "django-application"
- ]
+ "uid": "github/jpuritz/dDocent",
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+ "avatar": "https://avatars.githubusercontent.com/u/4837703?v=4",
+ "description": "a bash pipeline for RAD sequencing",
+ "topics": []
},
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- "avatar": "https://avatars.githubusercontent.com/u/1220306?v=4",
- "description": "Speech Processing Toolbox for MATLAB",
+ "uid": "github/nye17/javelin",
+ "url": "https://github.com/nye17/javelin",
+ "rel": "/software/repository/github/nye17/javelin",
+ "avatar": "https://avatars.githubusercontent.com/u/1127638?v=4",
+ "description": "JAVELIN is now working under Python 3!",
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+ "avatar": "https://avatars.githubusercontent.com/u/54137652?v=4",
+ "description": "CytokineLink: a map of cytokine communication for inflammatory and infectious diseases",
"topics": []
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- "description": "The next generation of EpiCollect, multiple forms, more fields and more control. We recommend using Apache 2.2 or later, PHP 5.3 or later and MySQL 5.5 or later.",
+ "uid": "github/korcsmarosgroup/TFlink",
+ "url": "https://github.com/korcsmarosgroup/TFlink",
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+ "avatar": "https://avatars.githubusercontent.com/u/54137652?v=4",
+ "description": "Repository for the TFlink.net website.",
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- "description": "Simulation of High Aspect Ratio aeroplanes and wind turbines in Python: a nonlinear aeroelastic code",
+ "uid": "github/santiagocasas/clapp",
+ "url": "https://github.com/santiagocasas/clapp",
+ "rel": "/software/repository/github/santiagocasas/clapp",
+ "avatar": "https://avatars.githubusercontent.com/u/6987716?v=4",
+ "description": "CLAPP: CLASS LLM Agent for Pair Programming",
"topics": [
- "aeroelasticity",
- "simulation",
- "aeronautics",
- "structures",
- "structural-dynamics",
- "wind-turbines"
+ "ai",
+ "class",
+ "cosmology",
+ "ag2",
+ "agentic-ai",
+ "llm",
+ "openai-api"
]
},
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- "avatar": "https://avatars.githubusercontent.com/u/1220306?v=4",
- "description": "Code for modelling estimated deaths and cases for COVID19. ",
+ "uid": "github/BigDataBiology/argNorm",
+ "url": "https://github.com/BigDataBiology/argNorm",
+ "rel": "/software/repository/github/BigDataBiology/argNorm",
+ "avatar": "https://avatars.githubusercontent.com/u/38910137?v=4",
+ "description": "ARG normalization by mapping to the ARO ontology.",
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- "branching-process",
- "intervention-study",
- "probabilistic-models",
- "statistical-models",
- "statistical-inference",
- "statistical-computing"
+ "antibiotic-resistance",
+ "bioinformatics"
]
},
{
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- "avatar": "https://avatars.githubusercontent.com/u/1220306?v=4",
- "description": "SWMManywhere is used to derive and simulate a sewer network anywhere in the world",
+ "uid": "github/BigDataBiology/macrel",
+ "url": "https://github.com/BigDataBiology/macrel",
+ "rel": "/software/repository/github/BigDataBiology/macrel",
+ "avatar": "https://avatars.githubusercontent.com/u/38910137?v=4",
+ "description": "Predict AMPs in (meta)genomes and peptides",
"topics": [
- "hacktoberfest",
- "hydrology-stormwater-analysis",
- "python",
- "stormwater",
- "swmm",
- "swmm5",
- "hydraulic-modelling",
- "swmmanywhere"
+ "metagenomics",
+ "peptide",
+ "bioinformatics",
+ "biology",
+ "genomics",
+ "ngless"
]
},
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- "description": "Analysis of the genomic architecture and functional role of myocardial trabeculae",
+ "uid": "github/thomgrand/fim-python",
+ "url": "https://github.com/thomgrand/fim-python",
+ "rel": "/software/repository/github/thomgrand/fim-python",
+ "avatar": "https://avatars.githubusercontent.com/u/73308131?v=4",
+ "description": "This repository implements the Fast Iterative Method (FIM) for use in python",
"topics": []
},
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- "description": "Research References Tracking Tool",
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- "description": "epidemia package",
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+ "uid": "github/pandegroup/openmm",
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+ "rel": "/software/repository/github/pandegroup/openmm",
+ "avatar": "https://avatars.githubusercontent.com/u/52428936?v=4",
+ "description": "OpenMM is a toolkit for molecular simulation using high performance GPU code. ",
+ "topics": [
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+ "molecular-dynamics"
+ ]
},
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- "description": "Unsteady Vortex Lattice Method for Aeroelasticity in C++",
+ "uid": "github/jonaselgammal/SIGWAY",
+ "url": "https://github.com/jonaselgammal/SIGWAY",
+ "rel": "/software/repository/github/jonaselgammal/SIGWAY",
+ "avatar": "https://avatars.githubusercontent.com/u/77438543?v=4",
+ "description": "A code to calculate SIGW for either single-field, a function of curvature perturbations or an empirical spectrum of curvature perturbations",
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- "avatar": "https://avatars.githubusercontent.com/u/1220306?v=4",
- "description": "Imperial College Research Software Directory",
+ "uid": "github/jonaselgammal/GPry",
+ "url": "https://github.com/jonaselgammal/GPry",
+ "rel": "/software/repository/github/jonaselgammal/GPry",
+ "avatar": "https://avatars.githubusercontent.com/u/77438543?v=4",
+ "description": "A Package for Bayesian inference of expensive likelihoods with Gaussian Processes",
"topics": []
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- "description": "A collection of handy scripts for use with the Imperial College Research Computing Service cluster",
- "topics": []
+ "uid": "github/czbiohub-sf/Rapid-QC-MS",
+ "url": "https://github.com/czbiohub-sf/Rapid-QC-MS",
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+ "avatar": "https://avatars.githubusercontent.com/u/28747162?v=4",
+ "description": "Realtime quality control for mass spectrometry data acquisition",
+ "topics": [
+ "mass-spectrometry",
+ "plotly-dash",
+ "metabolomics"
+ ]
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- "avatar": "https://avatars.githubusercontent.com/u/51328597?v=4",
- "description": "Highly Comparative Graph Analysis - Code for network phenotyping ",
+ "uid": "github/tao-bioinfo/MiFish",
+ "url": "https://github.com/tao-bioinfo/MiFish",
+ "rel": "/software/repository/github/tao-bioinfo/MiFish",
+ "avatar": "https://avatars.githubusercontent.com/u/1146090?v=4",
+ "description": "This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers",
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- "networks",
- "feature-extraction",
- "classification-algorithm",
- "graph-features",
- "interpretable-features",
- "graph-analysis-toolbox",
- "graph-embedding"
+ "edna",
+ "edna-pipeline"
]
},
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+ "rel": "/software/repository/github/gmbrandt/HTOF",
+ "avatar": "https://avatars.githubusercontent.com/u/38594712?v=4",
+ "description": "HTOF: Code which parses the intermediate data from Hipparcos and Gaia and fits astrometric solutions to those data. Capable of computing likelyhoods and parameter errors in line with the catalog.",
"topics": []
},
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- "avatar": "https://avatars.githubusercontent.com/u/43979903?v=4",
- "description": "A Bayesian inference framework to constrain kilonova models.",
+ "uid": "github/gmbrandt/xwavecal",
+ "url": "https://github.com/gmbrandt/xwavecal",
+ "rel": "/software/repository/github/gmbrandt/xwavecal",
+ "avatar": "https://avatars.githubusercontent.com/u/38594712?v=4",
+ "description": "A library of routines for wavelength calibrating echelle spectrographs for high precision radial velocity work. A limited data-reduction pipeline is included.",
"topics": []
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{
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- "avatar": "https://avatars.githubusercontent.com/u/25725978?v=4",
- "description": "A simple three-dimensional dust continuum radiative transfer code for method comparison",
+ "uid": "github/matthiasdemuzere/w2w",
+ "url": "https://github.com/matthiasdemuzere/w2w",
+ "rel": "/software/repository/github/matthiasdemuzere/w2w",
+ "avatar": "https://avatars.githubusercontent.com/u/6926916?v=4",
+ "description": "A python tool that ingests WUDAPT information into WRF.",
"topics": []
},
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- "cardiac-imaging"
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- "avatar": "https://avatars.githubusercontent.com/u/6012898?v=4",
- "description": "Find legal citations in any block of text",
+ "uid": "github/phipsonlab/propeller-paper-analysis",
+ "url": "https://github.com/phipsonlab/propeller-paper-analysis",
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+ "avatar": "https://avatars.githubusercontent.com/u/103480133?v=4",
+ "description": "The website hosts the analysis and evaluation of different statistical methods for determining differences in cell type proportions in single cell RNA-seq data.",
"topics": []
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+ "uid": "github/pik-piam/flodym",
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+ "rel": "/software/repository/github/pik-piam/flodym",
+ "avatar": "https://avatars.githubusercontent.com/u/29039634?v=4",
+ "description": "library for material flow analysis models",
"topics": []
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- "container-orchestration",
- "singularity"
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- "description": "server for storage and management of singularity images",
+ "uid": "github/ParBLiSS/FastANI",
+ "url": "https://github.com/ParBLiSS/FastANI",
+ "rel": "/software/repository/github/ParBLiSS/FastANI",
+ "avatar": "https://avatars.githubusercontent.com/u/16827085?v=4",
+ "description": "Fast Whole-Genome Similarity (ANI) Estimation",
"topics": [
- "singularityhub",
- "singularity",
- "singularity-containers",
- "containers",
- "management",
- "registry"
+ "microbial-genomics"
]
},
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- "description": "Local filesystem registry for containers (intended for HPC) using Lmod or Environement Modules. Works for users and admins.",
+ "uid": "github/thelfer/MFrontGallery",
+ "url": "https://github.com/thelfer/MFrontGallery",
+ "rel": "/software/repository/github/thelfer/MFrontGallery",
+ "avatar": "https://avatars.githubusercontent.com/u/13975528?v=4",
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- "containers",
- "reproducibility"
+ "heat-transfer",
+ "material-properties",
+ "solid-mechanics",
+ "material-knowledge-management",
+ "mfront"
]
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+ "avatar": "https://avatars.githubusercontent.com/u/13975528?v=4",
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"topics": []
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+ "avatar": "https://avatars.githubusercontent.com/u/104085040?v=4",
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"topics": []
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- "description": "python tool to display and analysis astronomical data cubes",
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+ "avatar": "https://avatars.githubusercontent.com/u/3254542?v=4",
+ "description": "Source code for GINCCo Paper",
"topics": []
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+ "uid": "github/mbillingr/libgdf",
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+ "avatar": "https://avatars.githubusercontent.com/u/2392396?v=4",
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"topics": []
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- "overlap-queries",
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- "avatar": "https://avatars.githubusercontent.com/u/25345003?v=4",
- "description": "Performant Pythonic GenomicRanges",
+ "uid": "github/hknd23/idcempy",
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+ "avatar": "https://avatars.githubusercontent.com/u/35204932?v=4",
+ "description": "Inflated Discrete Choice Models",
"topics": [
- "genomicranges",
- "python",
- "genomics",
- "pandas",
- "data-structures"
+ "mixture-model",
+ "discrete-choice",
+ "multinomial-logistic-regression",
+ "ordered-probit-regression"
]
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- "avatar": "https://avatars.githubusercontent.com/u/15861316?v=4",
- "description": "Python module to manipulate and visualize minimap2's cs tag",
+ "uid": "github/BioComputingUP/ring-pymol",
+ "url": "https://github.com/BioComputingUP/ring-pymol",
+ "rel": "/software/repository/github/BioComputingUP/ring-pymol",
+ "avatar": "https://avatars.githubusercontent.com/u/7839689?v=4",
+ "description": "This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua",
"topics": [
"bioinformatics",
- "python",
- "sequence",
- "minimap2",
- "sam",
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- "description": "Ontology-aware Neural Network for Mircobiome Data Mining!",
- "topics": [
- "neural-network",
- "microbiome-model",
- "ontology-search"
+ "pymol",
+ "plugin"
]
},
{
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+ "uid": "github/PhilippJunk/homelette",
+ "url": "https://github.com/PhilippJunk/homelette",
+ "rel": "/software/repository/github/PhilippJunk/homelette",
+ "avatar": "https://avatars.githubusercontent.com/u/69007269?v=4",
+ "description": "A unified and modular interface to homology modelling software",
"topics": []
},
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+ "uid": "github/leishenggit/CircleBase",
+ "url": "https://github.com/leishenggit/CircleBase",
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+ "avatar": "https://avatars.githubusercontent.com/u/11373459?v=4",
+ "description": "An integrated resource and analysis platform for human eccDNAs",
"topics": [
- "cosmology",
- "outdated",
- "eth-zurich",
- "markov-chains"
+ "eccdna",
+ "function-regulation",
+ "pagerank"
]
},
{
- "uid": "github/cosmo-ethz/seek",
- "url": "https://github.com/cosmo-ethz/seek",
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- "avatar": "https://avatars.githubusercontent.com/u/8969967?v=4",
- "description": "A flexible and easy-to-extend data processing pipeline for single dish radio telescopes",
+ "uid": "github/aasensio/torchmfbd",
+ "url": "https://github.com/aasensio/torchmfbd",
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},
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- "one-shot-learning",
- "logo-detection",
- "object-detection",
- "image-processing",
- "video-processing",
- "small-dataset"
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+ "uid": "github/aasensio/sicon",
+ "url": "https://github.com/aasensio/sicon",
+ "rel": "/software/repository/github/aasensio/sicon",
+ "avatar": "https://avatars.githubusercontent.com/u/1766597?v=4",
+ "description": "Deep Learning Assisted Stokes Inversion",
+ "topics": []
},
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- "topics": [
- "astronomy",
- "astrophysics",
- "python",
- "astronomical-images",
- "stars"
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+ "uid": "github/aasensio/hazel",
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+ "avatar": "https://avatars.githubusercontent.com/u/1766597?v=4",
+ "description": "Hazel: synthesis and inversion of Stokes profiles",
+ "topics": []
},
{
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- "description": "Compressed representations of opacity for radiative transfer!",
- "topics": [
- "astronomy",
- "atmospheres",
- "exoplanets",
- "radiative-transfer"
- ]
+ "uid": "github/aasensio/molpop-cep",
+ "url": "https://github.com/aasensio/molpop-cep",
+ "rel": "/software/repository/github/aasensio/molpop-cep",
+ "avatar": "https://avatars.githubusercontent.com/u/1766597?v=4",
+ "description": "Molpop-cep",
+ "topics": []
},
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- "avatar": "https://avatars.githubusercontent.com/u/95471?v=4",
- "description": "Compute the line emission from a geometrically thin protoplanetary disk",
+ "uid": "github/MartianColonist/POSEIDON",
+ "url": "https://github.com/MartianColonist/POSEIDON",
+ "rel": "/software/repository/github/MartianColonist/POSEIDON",
+ "avatar": "https://avatars.githubusercontent.com/u/22718554?v=4",
+ "description": "Multidimensional atmospheric retrieval of exoplanet spectra.",
"topics": []
},
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- "url": "https://github.com/smaret/astrochem",
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- "avatar": "https://avatars.githubusercontent.com/u/95471?v=4",
- "description": "A code to compute the abundances of chemical species in the interstellar medium",
+ "uid": "github/MartianColonist/Cthulhu",
+ "url": "https://github.com/MartianColonist/Cthulhu",
+ "rel": "/software/repository/github/MartianColonist/Cthulhu",
+ "avatar": "https://avatars.githubusercontent.com/u/22718554?v=4",
+ "description": "A Python package to calculate cross sections for substellar atmospheres",
"topics": []
},
{
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- "url": "https://github.com/synthesizer-project/synthesizer",
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- "avatar": "https://avatars.githubusercontent.com/u/182127563?v=4",
- "description": "Synthesizer - a code for creating synthetic astrophysical observables",
+ "uid": "github/AstroAI-Lab/CODES-Benchmark",
+ "url": "https://github.com/AstroAI-Lab/CODES-Benchmark",
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+ "avatar": "https://avatars.githubusercontent.com/u/111747777?v=4",
+ "description": "Benchmarking Surrogates for coupled ODE systems.",
"topics": [
- "astrophysics",
- "numerical-simulations",
- "synthetic-data"
+ "chemical-reaction-networks",
+ "deeponet",
+ "neuralode",
+ "ode",
+ "operator-learning",
+ "surrogate-models"
]
},
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- "description": "Investigations of chromatic effects for LSST weak lensing, as documented here: https://LSSTDESC.github.io/chroma/ and here:",
+ "uid": "github/gmrandazzo/libscientific",
+ "url": "https://github.com/gmrandazzo/libscientific",
+ "rel": "/software/repository/github/gmrandazzo/libscientific",
+ "avatar": "https://avatars.githubusercontent.com/u/3600735?v=4",
+ "description": "Libscientific is a C framework for multivariate and other statistical analysis",
"topics": []
},
{
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- "avatar": "https://avatars.githubusercontent.com/u/2731443?v=4",
- "description": "Save All Correlations and Covariances",
+ "uid": "github/GabrielNakamura/FishPhyloMaker",
+ "url": "https://github.com/GabrielNakamura/FishPhyloMaker",
+ "rel": "/software/repository/github/GabrielNakamura/FishPhyloMaker",
+ "avatar": "https://avatars.githubusercontent.com/u/13869477?v=4",
+ "description": "Making phylogenies for a list of fish species ",
"topics": []
},
{
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- "url": "https://github.com/LSSTDESC/CCL",
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- "description": "DESC Core Cosmology Library: cosmology routines with validated numerical accuracy",
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+ "url": "https://github.com/samuelyeewl/specmatch-emp",
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+ "avatar": "https://avatars.githubusercontent.com/u/7497009?v=4",
+ "description": "Empirical SpecMatch",
"topics": []
},
{
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- "avatar": "https://avatars.githubusercontent.com/u/2731443?v=4",
- "description": "Weak lensing fast simulations and analysis of blended objects.",
+ "uid": "github/r-spatialecology/shar",
+ "url": "https://github.com/r-spatialecology/shar",
+ "rel": "/software/repository/github/r-spatialecology/shar",
+ "avatar": "https://avatars.githubusercontent.com/u/42056187?v=4",
+ "description": ":package: Analyse species-habitat associations in R",
"topics": [
- "astronomy",
- "python"
+ "landscape-ecology",
+ "point-pattern-analysis",
+ "spatial-analysis",
+ "habitat-association"
]
},
{
- "uid": "github/LSSTDESC/Spectractor",
- "url": "https://github.com/LSSTDESC/Spectractor",
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- "avatar": "https://avatars.githubusercontent.com/u/2731443?v=4",
- "description": "Spectractor aims at measuring the atmospheric transmission from slitless spectrophotometry images.",
+ "uid": "github/hannorein/rebound",
+ "url": "https://github.com/hannorein/rebound",
+ "rel": "/software/repository/github/hannorein/rebound",
+ "avatar": "https://avatars.githubusercontent.com/u/53376?v=4",
+ "description": "\ud83d\udcab An open-source multi-purpose N-body code.",
+ "topics": [
+ "astrophysics",
+ "n-body",
+ "planetary-science",
+ "symplectic-integrator"
+ ]
+ },
+ {
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+ "avatar": "https://avatars.githubusercontent.com/u/10883629?v=4",
+ "description": "Some code for processing and analysing UK Biobank cardiac MR images.",
"topics": []
},
{
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- "url": "https://github.com/LSSTDESC/NaMaster",
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- "avatar": "https://avatars.githubusercontent.com/u/2731443?v=4",
- "description": "A unified pseudo-Cl framework",
+ "uid": "github/morispi/LRez",
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+ "avatar": "https://avatars.githubusercontent.com/u/26629273?v=4",
+ "description": "Standalone tool and library allowing to work with barcoded linked-reads",
+ "topics": [
+ "barcode",
+ "barcodes",
+ "linked-reads",
+ "linked",
+ "reads",
+ "10x",
+ "10xgenomics",
+ "10x-genomics",
+ "index",
+ "haplotagging",
+ "tell-seq",
+ "stlfr",
+ "bioinformatics"
+ ]
+ },
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+ "description": "GRIDSS: the Genomic Rearrangement IDentification Software Suite",
"topics": []
},
{
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- "description": "Tools to create blend catalogs, produce training samples and implement blending metrics",
+ "uid": "github/tue-bmd/zea",
+ "url": "https://github.com/tue-bmd/zea",
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+ "avatar": "https://avatars.githubusercontent.com/u/101975600?v=4",
+ "description": "zea: A Toolbox for Cognitive Ultrasound Imaging",
"topics": [
- "simulation",
- "galaxies",
- "tutorials",
- "cosmology",
- "blending",
- "crowded-scenes",
- "blended-galaxies"
+ "deep-learning",
+ "generative-models",
+ "jax",
+ "keras",
+ "python",
+ "pytorch",
+ "tensorflow",
+ "ultrasound-imaging"
]
},
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- "description": "Machine learning code for photometric supernova classification",
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+ "rel": "/software/repository/github/kotekan/kotekan",
+ "avatar": "https://avatars.githubusercontent.com/u/36037416?v=4",
+ "description": "High performance radio data processing pipeline",
"topics": []
},
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- "description": "A validation framework and tests for mock galaxy catalogs and beyond",
+ "uid": "github/kartheikiyer/dense_basis",
+ "url": "https://github.com/kartheikiyer/dense_basis",
+ "rel": "/software/repository/github/kartheikiyer/dense_basis",
+ "avatar": "https://avatars.githubusercontent.com/u/14657226?v=4",
+ "description": "Dense Basis SED fitting",
"topics": [
- "nersc",
- "descqa",
- "validation",
- "python",
- "lsst",
- "web-app"
+ "sed-fitting",
+ "galaxy-evolution",
+ "star-formation-history",
+ "data-compression"
]
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- "description": "Lowered Isothermal Model Explorer in Python",
+ "uid": "github/PeterBartram/TES",
+ "url": "https://github.com/PeterBartram/TES",
+ "rel": "/software/repository/github/PeterBartram/TES",
+ "avatar": "https://avatars.githubusercontent.com/u/22742253?v=4",
+ "description": "Terrestrial Exoplanet Simulator public repository",
"topics": []
},
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- "description": "Python/Cloudy package for simulating escaping exoplanet atmospheres and their transit spectra.",
+ "uid": "github/yuefan98/nleis.py",
+ "url": "https://github.com/yuefan98/nleis.py",
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+ "avatar": "https://avatars.githubusercontent.com/u/97193085?v=4",
+ "description": "A NLEIS toolbox for impedance.py that provides RC level nonlinear equivalent circuit modeling (nECM) and analysis",
+ "topics": [
+ "eis",
+ "electrochemistry",
+ "2nd-nleis",
+ "lithium-ion-batteries",
+ "impedance-py",
+ "battery",
+ "fuel-cell"
+ ]
+ },
+ {
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+ "http",
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- "structure",
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+ "description": "Repo for academictwitteR package to query the Twitter Academic Research Product Track v2 API endpoint.",
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+ "description": "rfft-based flat-sky CMB lensing tools",
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- "description": "The Tianlai pipeline.",
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- "description": "Clustergram - Visualization and diagnostics for cluster analysis in Python",
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+ "description": "A system for creating Shiny dashboards using Excel spreadsheets",
"topics": []
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"topics": []
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+ "description": "De-trending of K2 Light curves",
"topics": [
- "astronomy",
- "psf-estimation",
- "lenstronomy"
+ "exoplanets",
+ "photometry",
+ "kepler",
+ "k2-light-curves",
+ "k2-data-science",
+ "exoplanet-transits"
]
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+ "avatar": "https://avatars.githubusercontent.com/u/9323819?v=4",
+ "description": "A general photodynamical code for exoplanet light curves",
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- "gravitational-lensing",
- "image-simulation",
- "lenstronomy",
- "astropy-affiliated",
- "cosmology",
- "astronomy",
- "galaxies",
- "galaxy-morphology",
- "strong-lensing",
- "astrophysics"
+ "exoplanets",
+ "exoplanet-transits",
+ "light-curves",
+ "binary-stars",
+ "exomoons"
]
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+ "avatar": "https://avatars.githubusercontent.com/u/9323819?v=4",
+ "description": "interpretable gaussian processes for stellar light curves",
"topics": [
- "lenstronomy",
- "cosmology"
+ "gaussian-processes",
+ "lightcurves",
+ "timeseries-analysis",
+ "stars"
]
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- "description": "Nanopore read de-multiplexer",
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"topics": []
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+ "avatar": "https://avatars.githubusercontent.com/u/17302115?v=4",
+ "description": "SPectroscopic and Interferometric Orbital Solution finder",
"topics": []
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- "nonlinear-time-series",
- "surrogate",
- "surrogates",
- "hacktoberfest",
- "hypothesis-testing",
- "julia"
- ]
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+ "description": "ReACT public repo",
+ "topics": []
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+ "rel": "/software/repository/github/Kaixhin/FGLab",
+ "avatar": "https://avatars.githubusercontent.com/u/991891?v=4",
+ "description": "Future Gadget Laboratory",
"topics": [
- "science",
- "science-research",
- "project-management",
- "project-assistant",
- "simulations",
- "setup-tool"
+ "machine-learning",
+ "reproducible-research",
+ "reproducible-science"
]
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- "description": "Transition Indicators / Early Warning Signals / Regime Shifts / Change Point Detection",
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+ "rel": "/software/repository/github/Kaixhin/Rainbow",
+ "avatar": "https://avatars.githubusercontent.com/u/991891?v=4",
+ "description": "Rainbow: Combining Improvements in Deep Reinforcement Learning",
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- "early-warning-signals",
- "nonlinear-dynamics",
- "nonlinear-timeseries-analysis",
- "tipping-points",
- "hacktoberfest",
- "change-point-detection",
- "critical-slowing-down",
- "resilience-loss"
+ "deep-learning",
+ "deep-reinforcement-learning"
]
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+ "rel": "/software/repository/github/Kaixhin/Atari",
+ "avatar": "https://avatars.githubusercontent.com/u/991891?v=4",
+ "description": "Persistent advantage learning dueling double DQN for the Arcade Learning Environment",
"topics": [
- "julia",
- "pdes",
- "partial-differential-equations",
- "finite-elements",
- "numerical-methods",
- "gridap"
+ "deep-reinforcement-learning",
+ "deep-learning"
]
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+ "rel": "/software/repository/github/Kaixhin/Autoencoders",
+ "avatar": "https://avatars.githubusercontent.com/u/991891?v=4",
+ "description": "Torch implementations of various types of autoencoders",
+ "topics": [
+ "autoencoder",
+ "deep-learning"
+ ]
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+ "rel": "/software/repository/github/Kaixhin/spinning-up-basic",
+ "avatar": "https://avatars.githubusercontent.com/u/991891?v=4",
+ "description": "Basic versions of agents from Spinning Up in Deep RL written in PyTorch",
"topics": [
- "python",
- "data-access",
- "data-catalog"
+ "deep-learning",
+ "deep-reinforcement-learning"
]
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- "description": "Stream trees for SNP datasets",
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+ "url": "https://github.com/Kaixhin/FGMachine",
+ "rel": "/software/repository/github/Kaixhin/FGMachine",
+ "avatar": "https://avatars.githubusercontent.com/u/991891?v=4",
+ "description": "Future Gadget Machine",
+ "topics": [
+ "machine-learning",
+ "reproducible-research",
+ "reproducible-science"
+ ]
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- "description": "Rapid and accurate taxonomic classification of short paired-end sequence reads from the 16S ribosomal RNA gene.",
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+ "url": "https://github.com/Kaixhin/dockerfiles",
+ "rel": "/software/repository/github/Kaixhin/dockerfiles",
+ "avatar": "https://avatars.githubusercontent.com/u/991891?v=4",
+ "description": "Compilation of Dockerfiles with automated builds enabled on the Docker Registry",
+ "topics": [
+ "docker",
+ "dockerfiles",
+ "machine-learning",
+ "cuda",
+ "vnc",
+ "deep-learning"
+ ]
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- "description": "JVM property graph data unification framework",
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+ "rel": "/software/repository/github/Kaixhin/PlaNet",
+ "avatar": "https://avatars.githubusercontent.com/u/991891?v=4",
+ "description": "Deep Planning Network: Control from pixels by latent planning with learned dynamics",
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- "groovy",
- "jvm",
- "knowledge-graph",
- "neo4j",
- "ontology",
- "property-graph",
- "property-graphs",
- "tinkerpop"
+ "deep-learning",
+ "deep-reinforcement-learning"
]
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- "description": "Easily install all nanopack scripts together",
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+ "url": "https://github.com/andycasey/smhr",
+ "rel": "/software/repository/github/andycasey/smhr",
+ "avatar": "https://avatars.githubusercontent.com/u/504436?v=4",
+ "description": "Spectroscopy Made Hard(er)",
"topics": []
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- "description": "Comparison of multiple long read datasets",
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+ "url": "https://github.com/andycasey/sick",
+ "rel": "/software/repository/github/andycasey/sick",
+ "avatar": "https://avatars.githubusercontent.com/u/504436?v=4",
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"topics": []
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- "description": "Rust implementation of NanoFilt+NanoLyse, both originally written in Python. This tool, intended for long read sequencing such as PacBio or ONT, filters and trims a fastq file.",
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"topics": []
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+ "avatar": "https://avatars.githubusercontent.com/u/7826375?v=4",
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"topics": []
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- "description": "Plotting scripts for long read sequencing data",
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+ "description": "You can find the website of NuPyCEE at ",
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+ "chemical-evolution",
+ "nugrid"
+ ]
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+ "description": "The Cosmic Star Formation Rate Model",
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+ "avatar": "https://avatars.githubusercontent.com/u/4741887?v=4",
+ "description": "A toolkit for analyzing and visualizing phylogenetic (placement) data",
+ "topics": [
+ "c-plus-plus",
+ "phylogenetics",
+ "phylogenetic-data",
+ "phylogenetic-placement",
+ "evolutionary-placement",
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+ "genesis",
+ "gappa"
+ ]
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+ "explainable-ai",
+ "explainable-artificial-intelligence",
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+ "feature-attribution",
+ "interpretability",
+ "interpretable-machine-learning",
+ "interpretable-ml",
+ "time-series"
+ ]
+ },
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"topics": [
- "brine",
- "desalination",
- "resource-recovery",
- "techno-economic-analysis"
+ "python3",
+ "theory",
+ "bispectrum",
+ "peturbation-theory",
+ "powerspectrum",
+ "cosmology",
+ "forecasting",
+ "large-scale-structure-cosmology"
]
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"topics": [
- "code-generation",
- "computer-vision",
- "mathematics",
- "robotics",
- "symbolic-math"
+ "bispectrum",
+ "cosmology",
+ "peturbation-theory",
+ "powerspectrum"
]
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+ "avatar": "https://avatars.githubusercontent.com/u/77720426?v=4",
+ "description": "ChainoPy: A Python Library for Discrete Time Markov Chain based stochastic analysis",
"topics": [
- "python",
- "x-ray-absorption-fine-structure",
- "x-ray-fluorescence",
- "x-ray-physics",
- "synchrotron"
+ "bayesian-data-analysis",
+ "bayesian-inference",
+ "bayesian-statistics",
+ "data-analysis",
+ "deep-learning",
+ "forecasting",
+ "machine-learning",
+ "markov-chain",
+ "markov-model",
+ "markov-process",
+ "time-series",
+ "time-series-analysis",
+ "data-science"
]
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- "description": "Exoplanet Detection Map Calculator ",
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+ "url": "https://github.com/torluca/morphofit",
+ "rel": "/software/repository/github/torluca/morphofit",
+ "avatar": "https://avatars.githubusercontent.com/u/38278229?v=4",
+ "description": "A Python package for the morphological analysis of galaxies (Tortorelli & Mercurio 2023).",
"topics": []
},
{
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- "url": "https://github.com/biboyd/SALSA",
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- "avatar": "https://avatars0.githubusercontent.com/u/42776109?v=4",
- "description": "Salsa is a Python package for constructing synthetic absorber catalogs from astrophysical hydrodynamic simulations",
+ "uid": "github/big-data-lab-team/spot",
+ "url": "https://github.com/big-data-lab-team/spot",
+ "rel": "/software/repository/github/big-data-lab-team/spot",
+ "avatar": "https://avatars0.githubusercontent.com/u/22078250?v=4",
+ "description": "A set of tools to evaluate the reproducibility of computations",
"topics": []
},
{
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- "url": "https://github.com/dfguan/purge_dups",
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- "avatar": "https://avatars.githubusercontent.com/u/6100864?v=4",
- "description": "haplotypic duplication identification tool",
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+ "url": "https://github.com/shbhuk/mrexo",
+ "rel": "/software/repository/github/shbhuk/mrexo",
+ "avatar": "https://avatars.githubusercontent.com/u/25436514?v=4",
+ "description": "Non parametric Mass - Radius relationship for exoplanets",
"topics": []
},
{
- "uid": "github/jean-pierreBoth/gsearch",
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- "topics": [
- "average-nucleotide-identity",
- "nearest-neighbor-search",
- "probminhash-similarity"
- ]
+ "uid": "github/shbhuk/barycorrpy",
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+ "rel": "/software/repository/github/shbhuk/barycorrpy",
+ "avatar": "https://avatars.githubusercontent.com/u/25436514?v=4",
+ "description": "Python version of Barycorr",
+ "topics": []
},
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- "avatar": "https://avatars3.githubusercontent.com/u/11037261?v=4",
- "description": "A set of documented functions for simulating the performance of photovoltaic energy systems.",
+ "uid": "github/FrederickHuangLin/ANCOMBC",
+ "url": "https://github.com/FrederickHuangLin/ANCOMBC",
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+ "avatar": "https://avatars.githubusercontent.com/u/7278887?v=4",
+ "description": "Differential abundance (DA) and correlation analyses for microbial absolute abundance data",
"topics": [
- "solar-energy",
- "python",
- "renewable-energy",
- "renewables",
- "photovoltaic"
+ "ancom",
+ "differential-abundance-analysis",
+ "microbiome",
+ "normalization",
+ "sequencing",
+ "correlation",
+ "secom",
+ "ancombc",
+ "ancombc2"
]
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- "description": "Python-based machine learning code for detecting and analyzing flares",
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+ "avatar": "https://avatars.githubusercontent.com/u/25475545?v=4",
+ "description": "A REST service for mapping text analysis results from Averbis Health Discovery to FHIR resources.",
"topics": []
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- "description": "Code to do ephemeris matching of DR25 TCEs, KOIs, and EBs for false positive identificaiton.",
+ "uid": "github/ClusterMonteCarlo/CMC-COSMIC",
+ "url": "https://github.com/ClusterMonteCarlo/CMC-COSMIC",
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- "description": "The Kepler DR25 Skye Test",
- "topics": []
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+ "url": "https://github.com/lh3/minimap2",
+ "rel": "/software/repository/github/lh3/minimap2",
+ "avatar": "https://avatars.githubusercontent.com/u/480346?v=4",
+ "description": "A versatile pairwise aligner for genomic and spliced nucleotide sequences",
+ "topics": [
+ "bioinformatics",
+ "sequence-alignment",
+ "spliced-alignment",
+ "genomics"
+ ]
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{
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- "description": "Tools to help earthquake forecast model developers build and evaluate their forecasts",
- "topics": []
+ "uid": "github/lh3/wgsim",
+ "url": "https://github.com/lh3/wgsim",
+ "rel": "/software/repository/github/lh3/wgsim",
+ "avatar": "https://avatars.githubusercontent.com/u/480346?v=4",
+ "description": "Reads simulator",
+ "topics": [
+ "bioinformatics",
+ "genomics"
+ ]
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- "description": "On-the-fly processing and visualization of interactome data",
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+ "url": "https://github.com/lh3/miniasm",
+ "rel": "/software/repository/github/lh3/miniasm",
+ "avatar": "https://avatars.githubusercontent.com/u/480346?v=4",
+ "description": "Ultrafast de novo assembly for long noisy reads (though having no consensus step)",
"topics": [
"bioinformatics",
- "data-visualization",
- "hi-c",
- "interactome-sequencing",
- "radicl-seq",
- "grid-seq"
+ "genomics",
+ "denovo-assembly"
]
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- "description": "DearScholar: An open-source smartphone app for longitudinal scientific qualitative and quantitative (self-report) diary, log and survey research",
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+ "url": "https://github.com/lh3/bioawk",
+ "rel": "/software/repository/github/lh3/bioawk",
+ "avatar": "https://avatars.githubusercontent.com/u/480346?v=4",
+ "description": "BWK awk modified for biological data",
+ "topics": [
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+ "sequence-analysis"
+ ]
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- "avatar": "https://avatars.githubusercontent.com/u/22803843?v=4",
- "description": "A Smoothed Particle Hydrodynamics code for smashing stars (and planets)",
- "topics": []
+ "uid": "github/lh3/bfc",
+ "url": "https://github.com/lh3/bfc",
+ "rel": "/software/repository/github/lh3/bfc",
+ "avatar": "https://avatars.githubusercontent.com/u/480346?v=4",
+ "description": "High-performance error correction for Illumina resequencing data",
+ "topics": [
+ "bioinformatics",
+ "genomics"
+ ]
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- "avatar": "https://avatars.githubusercontent.com/u/114251096?v=4",
- "description": "Massive planetary spectra generator",
- "topics": []
+ "uid": "github/lh3/minigraph",
+ "url": "https://github.com/lh3/minigraph",
+ "rel": "/software/repository/github/lh3/minigraph",
+ "avatar": "https://avatars.githubusercontent.com/u/480346?v=4",
+ "description": "Sequence-to-graph mapper and graph generator",
+ "topics": [
+ "bioinformatics",
+ "genomics",
+ "sequence-alignment",
+ "genome-graph",
+ "pan-genome"
+ ]
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- "description": "Near Real Time monitoring of satellite image time-series",
+ "uid": "github/lh3/seqtk",
+ "url": "https://github.com/lh3/seqtk",
+ "rel": "/software/repository/github/lh3/seqtk",
+ "avatar": "https://avatars.githubusercontent.com/u/480346?v=4",
+ "description": "Toolkit for processing sequences in FASTA/Q formats",
"topics": [
- "anomalies-detection",
- "sentinel-2",
- "monitoring",
- "datacube",
- "forest-disturbances"
+ "bioinformatics",
+ "sequence-analysis"
]
},
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- "description": "Bye Bye Pink Noise",
- "topics": []
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+ "url": "https://github.com/lh3/bgt",
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+ "avatar": "https://avatars.githubusercontent.com/u/480346?v=4",
+ "description": "Flexible genotype query among 30,000+ samples whole-genome",
+ "topics": [
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+ "genomics"
+ ]
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- "description": "Grism SED Fitting package",
- "topics": []
+ "uid": "github/lh3/bedtk",
+ "url": "https://github.com/lh3/bedtk",
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+ "avatar": "https://avatars.githubusercontent.com/u/480346?v=4",
+ "description": "A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)",
+ "topics": [
+ "bioinformatics"
+ ]
},
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- "description": "Dynamic echelle diagrams for asteroseismology",
- "topics": []
+ "uid": "github/lh3/fermi-lite",
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+ "avatar": "https://avatars.githubusercontent.com/u/480346?v=4",
+ "description": "Standalone C library for assembling Illumina short reads in small regions",
+ "topics": [
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+ "genomics",
+ "denovo-assembly"
+ ]
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- "description": "Forward modelling of pulsating stars in binaries",
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+ "url": "https://github.com/jonas/tig",
+ "rel": "/software/repository/github/jonas/tig",
+ "avatar": "https://avatars.githubusercontent.com/u/8417?v=4",
+ "description": "Text-mode interface for git",
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- "asteroseismology",
- "mcmc",
- "bayesian-inference",
- "pymc3",
- "astronomy",
- "astrophysics",
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+ "git",
+ "c",
+ "ncurses",
+ "tui"
]
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- "description": "Westlake BioBank for Chinese pilot project",
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+ "url": "https://github.com/tiberioap/grav_waldo",
+ "rel": "/software/repository/github/tiberioap/grav_waldo",
+ "avatar": "https://avatars.githubusercontent.com/u/51127235?v=4",
+ "description": "Waveform anomaly detector",
"topics": []
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- "description": "Python healpix maps tools",
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+ "uid": "github/JuliaLang/julia",
+ "url": "https://github.com/JuliaLang/julia",
+ "rel": "/software/repository/github/JuliaLang/julia",
+ "avatar": "https://avatars0.githubusercontent.com/u/743164?v=4",
+ "description": "The Julia Language: A fresh approach to technical computing.",
+ "topics": [
+ "julia-language",
+ "julia",
+ "scientific",
+ "hpc",
+ "numerical",
+ "machine-learning",
+ "programming-language",
+ "science"
+ ]
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- "description": "python package implementing a multivariate Horner scheme for efficiently evaluating multivariate polynomials ",
+ "uid": "github/Alcampopiano/hypothesize",
+ "url": "https://github.com/Alcampopiano/hypothesize",
+ "rel": "/software/repository/github/Alcampopiano/hypothesize",
+ "avatar": "https://avatars1.githubusercontent.com/u/4624246?v=4",
+ "description": "Robust statistics in Python",
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- "mathematics",
- "polynomials",
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+ "statistics",
+ "robust-statistics",
"python",
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- "polynomial",
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+ "r",
+ "hypothesis-testing",
+ "data-analysis",
+ "stats",
+ "null-hypothesis",
+ "confidence-intervals",
+ "significance-testing"
]
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+ "pacbio"
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+ "troposphere",
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]
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+ "simulations"
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+ "neural-architecture-search",
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+ "python",
+ "tensorflow",
+ "keras",
+ "deep-learning",
+ "hpc",
+ "machine-learning",
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]
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- "python",
- "python3",
- "text",
- "tfidf",
- "extraction",
- "json",
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]
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+ "description": "Package for obtaining, validating, viewing, and storing GTFS (transit) data",
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- "python",
- "bioinformatics-tool",
- "long-read-data"
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+ "rstats",
+ "r-package",
+ "peer-reviewed",
+ "data-access"
]
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+ "rstats",
+ "reproducibility",
+ "high-performance-computing",
+ "bayesian",
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+ "statistics",
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+ "make",
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+ "r-targetopia"
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+ "description": "World Register of Marine Species R client",
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- "cosmology",
- "large-scale-structure",
- "clustering",
- "data-analysis",
- "python",
- "mpi",
- "mpi4py",
- "parallel-computing"
+ "taxonomy",
+ "marine-species",
+ "api-wrapper",
+ "biology",
+ "rstats",
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+ "taxize",
+ "biological-data",
+ "fish",
+ "marine-biology",
+ "API",
+ "api-client",
+ "marine",
+ "science",
+ "species",
+ "web",
+ "worms"
]
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- "description": "A UI for wavelength calibration.",
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+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Archetypes for targets and pipelines",
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+ "high-performance-computing",
+ "r",
+ "data-science",
+ "rstats",
+ "pipeline",
+ "r-package",
+ "workflow",
+ "targets",
+ "r-targetopia",
+ "peer-reviewed",
+ "scalereprod"
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+ "rel": "/software/repository/github/ropensci/spocc",
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+ "description": "Species occurrence data toolkit for R",
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+ "vertnet",
+ "ecoengine",
+ "antweb",
+ "ebird",
+ "data",
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+ "species",
+ "inaturalist",
+ "idigbio",
+ "obis",
+ "bison",
+ "species-occurrence",
+ "occurrence",
+ "spocc",
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+ "ALA",
+ "API",
+ "BISON",
+ "eBird",
+ "GBIF",
+ "iDigBio",
+ "INAT",
+ "OBIS",
+ "occurrences",
+ "specimens",
+ "taxonomy",
+ "Vertnet",
+ "web-services",
+ "data-access"
+ ]
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- "description": "Integrate neutrino geodesics in linear theory.",
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+ "description": "Interface to the Bold Systems barcode webservice",
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+ "barcodes",
+ "sequences",
+ "r",
+ "rstats",
+ "r-package",
+ "taxize",
+ "barcode",
+ "biodiversity",
+ "DNA",
+ "fasta",
+ "data-access"
+ ]
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- "description": "Library for cosmic neutrino calculations",
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+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "dittodb: A Test Environment for DB Queries in R",
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- "description": "BLASR: The PacBio\u00ae long read aligner",
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+ "description": "R client for the cranchecks.info API",
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+ "r",
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+ "r-package",
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- "description": "Code developed at the 2022 ORMIR workshop in Maastricht, Netherlands",
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+ "description": "Phylocom R interface",
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+ "ecology",
+ "community-ecology",
+ "r",
+ "rstats",
+ "r-package",
+ "characterevolution",
+ "communitystructure",
+ "Phylocom",
+ "phylodiversity",
+ "phylogeny",
+ "species",
+ "data-extraction"
+ ]
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- "description": "Analyzes whole genome sequencing data for gene-editing verification",
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+ "description": "Automated flagging of common spatial and temporal errors in biological and palaeontological collection data, for the use in conservation, ecology and palaeontology.",
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+ "rstats",
+ "data-extraction"
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- "description": "Chimeric Read Annotator",
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+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "ocean time series datasets",
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+ "data",
+ "scientific-data-types",
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+ "r",
+ "rstats",
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+ "data-access"
+ ]
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- "description": "Fast, flexible tools to simplify scientific Python",
+ "uid": "github/ropensci/osmextract",
+ "url": "https://github.com/ropensci/osmextract",
+ "rel": "/software/repository/github/ropensci/osmextract",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Download and import OpenStreetMap data from Geofabrik and other providers",
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- "containers",
- "data-science",
- "matplotlib",
- "numpy",
- "parallelization",
- "plotting",
- "scientific-computing",
- "utilities"
+ "osm",
+ "osm-pbf",
+ "rstats",
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+ "open-data",
+ "geofabrik-zone",
+ "geo",
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]
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- "description": "Python based toolbox for processing motion data",
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+ "url": "https://github.com/ropensci/bib2df",
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+ "description": "Parse a BibTeX file to a tibble",
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+ "r-package",
+ "peer-reviewed",
+ "data-extraction"
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- "description": "an algorithm for standardization and automation of unconfined compression test analysis",
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+ "rel": "/software/repository/github/ropensci/tic",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Tasks Integrating Continuously: CI-Agnostic Workflow Definitions",
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+ "travis-ci",
+ "appveyor",
+ "continuous-integration",
+ "deployment",
+ "r-package",
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+ "githubactions",
+ "scalereprod"
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- "description": "A Python package for netCDF analysis and post-processing",
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+ "url": "https://github.com/ropensci/pdftools",
+ "rel": "/software/repository/github/ropensci/pdftools",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Text Extraction, Rendering and Converting of PDF Documents",
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- "python",
- "netcdf"
+ "pdf-format",
+ "text-extraction",
+ "poppler-library",
+ "poppler",
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+ "pdftools",
+ "r-package",
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- "description": "De-Novo Repeat Discovery Tool",
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+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "R client package for the Circle CI API",
+ "topics": [
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+ "circle-ci",
+ "api-client",
+ "continuous-deployment",
+ "scalereprod"
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- "description": "A package for the extension of repetitive DNA sequences",
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+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "API Client and Data Munging for the Demographic and Health Survey Data",
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+ "survey-data",
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+ "peer-reviewed",
+ "r",
+ "r-package",
+ "rstats",
+ "data-access"
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- "description": "Generative modeling galaxy photometry for JWST",
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+ "description": "An automated pipeline for retrieving orthologous DNA sequences from GenBank in R",
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+ "blastn",
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+ "r",
+ "genbank",
+ "peer-reviewed",
+ "r-package",
+ "rstats",
+ "data-access"
+ ]
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- "description": "Utilities for astronomical spectral energy distributions",
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+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "R package for phonetic research and experimenting",
+ "topics": [
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+ "phonetics",
+ "phonology",
+ "fieldwork",
+ "praat",
+ "textgrid",
+ "elan",
+ "eaf",
+ "exmaralda",
+ "exb",
+ "flextext",
+ "audacity",
+ "srt-subtitles",
+ "data-extraction"
+ ]
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- "description": "Python code for Stellar Population Inference from Spectra and SEDs",
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+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "R package for downloading weather data from Environment and Climate Change Canada",
"topics": [
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- "fitting"
+ "weather-data",
+ "environment-canada",
+ "weather-downloader",
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+ "peer-reviewed",
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]
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+ "description": "Function-oriented Make-like declarative workflows for R",
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+ "description": "\ud83d\udce6 R package to simulate neutral landscape models \ud83c\udfd4",
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+ "description": "AAPOR Survey Outcome Rates",
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+ "rstats",
+ "scalereprod"
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- "fem",
- "fenics",
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+ "citations",
+ "doi",
+ "digital-object-identifier",
+ "metadata",
+ "bibtex",
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+ "crosscite",
+ "ris",
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+ "citation",
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+ "Crosscite",
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]
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+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": ":package: Taxonomic Database",
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- "description": "Chips-n-Salsa - A Java library of customizable, hybridizable, iterative, parallel, stochastic, and self-adaptive local search algorithms",
- "topics": []
+ "uid": "github/ropensci/epubr",
+ "url": "https://github.com/ropensci/epubr",
+ "rel": "/software/repository/github/ropensci/epubr",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Read EPUB files in R",
+ "topics": [
+ "epub-files",
+ "r",
+ "rstats",
+ "r-package",
+ "epub",
+ "epub-format",
+ "peer-reviewed",
+ "data-access"
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- "description": "\u03c1\u03bc - a Java library of Randomization enHancements and Other Math Utilities",
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+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": ":package: R package to access the CITES Speciesplus database ",
"topics": [
- "randomizer",
- "randomization",
- "gaussian",
- "cauchy",
- "binomial",
- "pseudorandom",
- "random-numbers"
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+ "api-client",
+ "trade",
+ "endangered-species",
+ "r-package",
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+ "data-access"
]
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- "description": "Medical Image Radiomics Processor",
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+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Package to calculate slopes of roads, rivers and trajectories",
"topics": [
- "radiomics",
- "image-processing"
+ "geospatial"
]
},
{
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+ "rel": "/software/repository/github/ropensci/graphql",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Bindings to libgraphqlparser for R",
"topics": [
- "app",
- "shiny",
- "actigraph",
- "monitor",
- "accelerometer",
- "r"
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+ "libgraphql",
+ "r",
+ "rstats",
+ "r-package",
+ "http-tools"
]
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- "description": "Instrumental Polarization Analysis of Astronomical Optics",
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+ "uid": "github/ropensci/patentsview",
+ "url": "https://github.com/ropensci/patentsview",
+ "rel": "/software/repository/github/ropensci/patentsview",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "An R client to the PatentsView API",
+ "topics": [
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+ "uspto",
+ "patentsview-api",
+ "r",
+ "rstats",
+ "patentsview",
+ "r-package",
+ "peer-reviewed",
+ "literature"
+ ]
},
{
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+ "uid": "github/ropensci/medrxivr",
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+ "rel": "/software/repository/github/ropensci/medrxivr",
+ "avatar": "https://avatars3.githubusercontent.com/u/1200269?v=4",
+ "description": "Access and search medRxiv and bioRxiv preprint data",
+ "topics": [
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+ "systematic-reviews",
+ "bibliographic-database",
+ "rstats",
+ "r-package",
+ "r",
+ "preprint-records",
+ "medrxiv-data",
+ "biorxiv",
+ "peer-reviewed"
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- "description": "Reimplementation of DCM12 algorithm in R language",
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+ "rel": "/software/repository/github/ropensci/rfema",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": " rfema allows users to access The Federal Emergency Management Agency's (FEMA) publicly available data through their API. The package provides a set of functions to easily navigate and access data from the National Flood Insurance Program along and FEMA's various disaster aid programs.",
"topics": []
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+ "rel": "/software/repository/github/ropensci/rfisheries",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "package for interacting with fisheries databases at openfisheries.org",
"topics": [
- "umi",
- "atac-seq",
- "deduplication"
+ "fisheries",
+ "open-data",
+ "openfisheries",
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]
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- "description": "Theano is a Python library that allows you to define, optimize, and evaluate mathematical expressions involving multi-dimensional arrays efficiently. It can use GPUs and perform efficient symbolic differentiation.",
- "topics": []
+ "uid": "github/ropensci/jsonvalidate",
+ "url": "https://github.com/ropensci/jsonvalidate",
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+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": ":heavy_check_mark::interrobang: Validate JSON",
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+ "json",
+ "json-validation",
+ "r-package",
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- "description": "Implementations for solving the Group and Fused Graphical Lasso problem",
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+ "url": "https://github.com/ropensci/cld2",
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+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "R Wrapper for Google's Compact Language Detector 2",
"topics": [
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- "optimization",
- "latent-variable-models",
- "network-inference",
- "graphical-lasso"
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+ "cld2",
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+ "language-detector",
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+ "literature"
]
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- "avatar": "https://avatars.githubusercontent.com/u/102005076?v=4",
- "description": "A Python package for easy generation and customization of water distribution network visualizations.",
- "topics": []
+ "uid": "github/ropensci/webchem",
+ "url": "https://github.com/ropensci/webchem",
+ "rel": "/software/repository/github/ropensci/webchem",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Chemical Information from the Web",
+ "topics": [
+ "rstats",
+ "ropensci",
+ "chemical-information",
+ "webscraping",
+ "cas-number",
+ "chemspider",
+ "identifier",
+ "r",
+ "r-package",
+ "data-access"
+ ]
},
{
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- "description": "Jupyter python notebooks related to the ArenA project",
- "topics": []
+ "uid": "github/ropensci/pubchunks",
+ "url": "https://github.com/ropensci/pubchunks",
+ "rel": "/software/repository/github/ropensci/pubchunks",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Get chunks of XML format scholarly articles",
+ "topics": [
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+ "literature",
+ "open-access",
+ "xml",
+ "rstats",
+ "r",
+ "r-package",
+ "citations",
+ "full-text",
+ "pdf",
+ "publications",
+ "TDM",
+ "text-ming"
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- "avatar": "https://avatars.githubusercontent.com/u/3764656?v=4",
- "description": "MetaSBT public databases",
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+ "url": "https://github.com/ropensci/trufflesniffer",
+ "rel": "/software/repository/github/ropensci/trufflesniffer",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "snif out truffles (secrets) [passwords, tokens, api keys]",
"topics": [
- "databases",
- "metagenome-assembled-genomes",
- "metagenomics",
- "reference-genomes",
- "sequence-bloom-trees"
+ "r",
+ "rstats",
+ "secrets",
+ "r-package",
+ "truffle",
+ "http-tools"
]
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- "description": "A novel method for assessing and measuring homophily in networks",
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+ "rel": "/software/repository/github/ropensci/USAboundariesData",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Datasets for the 'USAboundaries' package",
"topics": [
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- "homophily",
- "networks"
+ "r",
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+ "r-package",
+ "data-access"
]
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+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Interface to Open Tree of Life API",
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+ "peer-reviewed",
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+ "metadata",
+ "phylogenetics",
+ "ropensci",
+ "data-access"
+ ]
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+ "rel": "/software/repository/github/ropensci/phylogram",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Dendrograms for Evolutionary Analysis",
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+ "r",
+ "r-package",
+ "rstats",
+ "data-extraction"
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- "description": "ChainoPy: A Python Library for Discrete Time Markov Chain based stochastic analysis",
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+ "url": "https://github.com/ropensci/rgbif",
+ "rel": "/software/repository/github/ropensci/rgbif",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Interface to the Global Biodiversity Information Facility API",
"topics": [
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- "machine-learning",
- "markov-chain",
- "markov-model",
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- "time-series",
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- "data-science"
+ "gbif",
+ "api",
+ "data",
+ "biodiversity",
+ "species",
+ "rstats",
+ "r",
+ "spocc",
+ "r-package",
+ "lifewatch",
+ "oscibio",
+ "API",
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+ "data-access"
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- "description": "Count bases in BAM/CRAM files",
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+ "uid": "github/ropensci/seasl",
+ "url": "https://github.com/ropensci/seasl",
+ "rel": "/software/repository/github/ropensci/seasl",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Load CSL styles and locales in R, and inspect contents",
+ "topics": [
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+ "r-package",
+ "rstats",
+ "citeproc",
+ "citations",
+ "literature",
+ "parse",
+ "style",
+ "text-ming",
+ "literature"
+ ]
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- "description": "A tool to call somatic single nucleotide variants.",
- "topics": []
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+ "url": "https://github.com/ropensci/rfishbase",
+ "rel": "/software/repository/github/ropensci/rfishbase",
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+ "description": "R interface to the fishbase.org database",
+ "topics": [
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+ "fishbase",
+ "taxonomy",
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+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Complex, interactive heatmaps in R",
+ "topics": [
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+ "plotly",
+ "r",
+ "interactive-visualizations",
+ "data-visualization",
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+ "r-package",
+ "peer-reviewed",
+ "htmlwidgets"
+ ]
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- "description": "Massively parallel hybrid particle-field molecular dynamics in Python.",
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+ "rel": "/software/repository/github/ropensci/tidypmc",
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+ "description": "Parse full text XML documents from Pubmed Central",
"topics": [
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- "chemistry",
- "physics",
- "molecular-dynamics"
+ "literature"
]
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+ "description": ":package: JSON-LD representation of EML",
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- "food-security",
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+ "rstats",
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+ "API",
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+ "search",
+ "web",
+ "XML",
+ "data-access"
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+ "description": "taxonomic classes for R",
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+ "taxonomy",
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+ "data-cleaning",
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+ "hierarchy"
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- "topics": []
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+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Easily download and visualise climate data from CliFlo",
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+ "climate-data",
+ "climate-stations",
+ "national-climate-database",
+ "zealand",
+ "kml",
+ "windrose",
+ "weather",
+ "rstats",
+ "r-package",
+ "api",
+ "cliflo",
+ "climate",
+ "data",
+ "opensci",
+ "rain",
+ "temperature",
+ "wind",
+ "data-access"
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- "description": "A multi-scale, python-based library for the modelling of solar cells and semiconductor materials",
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+ "description": "Wrapper to the eBird API",
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- "semiconductor",
- "solar-cells",
- "python"
+ "ebird",
+ "rstats",
+ "birds",
+ "ebird-api",
+ "r",
+ "ebird-webservices",
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+ "description": "Data aggregation methods for raster data",
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+ "description": "NatureServe R client",
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+ "r",
+ "rstats",
+ "r-package",
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+ "species",
+ "web-services",
+ "data-access"
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"topics": [
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- "dark-matter",
- "perturbations",
- "physics",
- "particle-physics",
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+ "r",
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+ "spelling",
+ "spellcheck",
+ "spellchecker",
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+ "data-extraction"
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+ "description": "R package for accessing PPO data store",
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+ "description": "R bindings for OpenCV",
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+ "opencv",
+ "opencv-library",
+ "r",
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+ "image-processing"
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- "description": "This library allows to generate images of teeth for odontograms with tooth faces painted",
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+ "description": "WKT <-> GeoJSON",
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+ "r",
+ "r-package",
+ "binary",
+ "conversion",
+ "well-known-text"
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+ "description": "Repo for R package to query and download WFD data from the EA Catchment Data Explorer site",
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- "description": "Pressure, Activity, Magnetism and Light data analysis in R",
- "topics": []
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+ "individual-based-modelling",
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+ "scalereprod"
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- "description": "A TESS Archive RR Lyrae Classifier",
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+ "description": "I can haz all the phylogenies",
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+ "phylogeny",
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+ "plants",
+ "tree",
+ "data-access"
+ ]
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- "description": "A toolkit for soil gas analysis",
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+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Convert (R)Markdown files to XML, edit them, write them back as (R)Markdown",
+ "topics": [
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+ "rstats",
+ "xpath",
+ "commonmark",
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+ "description": "Webdriver/Selenium Binary Manager",
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+ "uid": "github/ropensci/baRcodeR",
+ "url": "https://github.com/ropensci/baRcodeR",
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+ "description": "Labeling, tracking, and organizing samples with 2D barcodes",
+ "topics": [
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},
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+ "uid": "github/ropensci/dbhydroR",
+ "url": "https://github.com/ropensci/dbhydroR",
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+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "R interface to the South Florida Water Management District's DBHYDRO Database :sweat_drops::palm_tree:",
"topics": [
- "mass-spectrometry",
- "hacktoberfest"
+ "water-quality",
+ "water-resources",
+ "ecology",
+ "geoscience",
+ "groundwater",
+ "government-data",
+ "r",
+ "rstats",
+ "r-package",
+ "peer-reviewed",
+ "data-access"
]
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+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Species traits data",
"topics": [
- "mass-spectrometry",
- "hacktoberfest"
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+ "taxonomy",
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+ "data-access"
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+ "description": "Text Interchange Formats",
"topics": [
- "hacktoberfest",
- "annotations",
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+ "text-processing",
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+ "tokenizer",
+ "natural-language-processing",
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+ "r",
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+ "US-NCDC",
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- "url": "https://github.com/Magritte-code/pomme",
- "rel": "/software/repository/github/Magritte-code/pomme",
- "avatar": "https://avatars.githubusercontent.com/u/34956055?v=4",
- "description": "Bayesian model reconstruction based on astronomical spectral line observations.",
+ "uid": "github/ropensci/helminthR",
+ "url": "https://github.com/ropensci/helminthR",
+ "rel": "/software/repository/github/ropensci/helminthR",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Accesses parasite occurrence records from the London Natural History Museum's Host-Parasite database, which contains over a quarter of a million helminth records.",
"topics": [
- "3d-reconstruction",
- "astronomy-astrophysics",
- "astronomy-software",
- "interferometry",
- "spectral-lines",
- "inverse-problem"
+ "helminth",
+ "parasites",
+ "open-data",
+ "disease-networks",
+ "r",
+ "rstats",
+ "r-package",
+ "data-access"
]
},
{
- "uid": "github/Magritte-code/Magritte",
- "url": "https://github.com/Magritte-code/Magritte",
- "rel": "/software/repository/github/Magritte-code/Magritte",
- "avatar": "https://avatars.githubusercontent.com/u/34956055?v=4",
- "description": "A modern software library for simulating radiation transport.",
+ "uid": "github/ropensci/binman",
+ "url": "https://github.com/ropensci/binman",
+ "rel": "/software/repository/github/ropensci/binman",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "A Binary Download Manager",
"topics": [
- "radiative-transfer",
- "astrophysics",
- "physics-simulation"
+ "r",
+ "r-package",
+ "rstats",
+ "http-tools"
]
},
{
- "uid": "github/EvolBioInf/phylonium",
- "url": "https://github.com/EvolBioInf/phylonium",
- "rel": "/software/repository/github/EvolBioInf/phylonium",
- "avatar": "https://avatars.githubusercontent.com/u/7930865?v=4",
- "description": "\u2665 Fast and Accurate Estimation of Evolutionary Distances",
+ "uid": "github/ropensci/nasapower",
+ "url": "https://github.com/ropensci/nasapower",
+ "rel": "/software/repository/github/ropensci/nasapower",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "API Client for NASA POWER Global Meteorology, Surface Solar Energy and Climatology in R",
"topics": [
- "bioinformatics",
- "alignment-free",
- "phylogenetics"
+ "agroclimatology",
+ "weather",
+ "r",
+ "nasa-power",
+ "nasa",
+ "agroclimatology-data",
+ "weather-variables",
+ "weather-data",
+ "earth-science",
+ "rstats",
+ "data-access",
+ "r-package",
+ "climate-data",
+ "global",
+ "meteorological-data",
+ "meteorology",
+ "NASA",
+ "NASA-POWER"
]
},
{
- "uid": "github/EvolBioInf/andi",
- "url": "https://github.com/EvolBioInf/andi",
- "rel": "/software/repository/github/EvolBioInf/andi",
- "avatar": "https://avatars.githubusercontent.com/u/7930865?v=4",
- "description": "\u2665 Efficient Estimation of Evolutionary Distances",
+ "uid": "github/ropensci/xslt",
+ "url": "https://github.com/ropensci/xslt",
+ "rel": "/software/repository/github/ropensci/xslt",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Extension of xml2 package for xsl transformations",
"topics": [
- "bioinformatics",
- "alignment-free"
+ "xslt",
+ "xml",
+ "r",
+ "rstats",
+ "r-package",
+ "data-extraction"
]
},
{
- "uid": "github/DS4Ag/dpest",
- "url": "https://github.com/DS4Ag/dpest",
- "rel": "/software/repository/github/DS4Ag/dpest",
- "avatar": "https://avatars.githubusercontent.com/u/11559844?v=4",
- "description": "Python package automating PEST file creation for DSSAT crop model calibration. Generates template files for Cultivar and Ecotype parameters, instruction files for OVERVIEW.OUT and PlantGro.OUT, and the main PEST control file. Includes utility to extend PlantGro.OUT files for complete time series compatibility.",
- "topics": []
+ "uid": "github/ropensci/randgeo",
+ "url": "https://github.com/ropensci/randgeo",
+ "rel": "/software/repository/github/ropensci/randgeo",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "random WKT or GeoJSON",
+ "topics": [
+ "geojson",
+ "wkt",
+ "rstats",
+ "r",
+ "r-package",
+ "geospatial"
+ ]
},
{
- "uid": "github/bertrandplez/Turbospectrum_NLTE",
- "url": "https://github.com/bertrandplez/Turbospectrum_NLTE",
- "rel": "/software/repository/github/bertrandplez/Turbospectrum_NLTE",
- "avatar": "https://avatars.githubusercontent.com/u/30231362?v=4",
- "description": "Turbospectrum v20 with NLTE capability",
- "topics": []
+ "uid": "github/ropensci/weatherOz",
+ "url": "https://github.com/ropensci/weatherOz",
+ "rel": "/software/repository/github/ropensci/weatherOz",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "An API Client for Australian Weather and Climate Data Resources",
+ "topics": [
+ "australia",
+ "rstats",
+ "weather",
+ "climate",
+ "api-client",
+ "data",
+ "weather-api",
+ "weather-forecast",
+ "rainfall",
+ "r"
+ ]
},
{
- "uid": "github/bertrandplez/Turbospectrum2019",
- "url": "https://github.com/bertrandplez/Turbospectrum2019",
- "rel": "/software/repository/github/bertrandplez/Turbospectrum2019",
- "avatar": "https://avatars.githubusercontent.com/u/30231362?v=4",
- "description": "synthetic spectrum calculation companion to MARCS",
- "topics": []
+ "uid": "github/ropensci/cRegulome",
+ "url": "https://github.com/ropensci/cRegulome",
+ "rel": "/software/repository/github/ropensci/cRegulome",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "An R package to access, manage and visualize regulome (microRNA/transcription factors)-gene correlations in cancer",
+ "topics": [
+ "r",
+ "database",
+ "datascience",
+ "cancer-genomics",
+ "tcga-data",
+ "transcription-factors",
+ "microrna",
+ "rstats",
+ "r-package",
+ "peer-reviewed",
+ "data-access"
+ ]
},
{
- "uid": "github/mosdef-hub/foyer",
- "url": "https://github.com/mosdef-hub/foyer",
- "rel": "/software/repository/github/mosdef-hub/foyer",
- "avatar": "https://avatars.githubusercontent.com/u/25673981?v=4",
- "description": "A package for atom-typing as well as applying and disseminating forcefields",
+ "uid": "github/ropensci/ghql",
+ "url": "https://github.com/ropensci/ghql",
+ "rel": "/software/repository/github/ropensci/ghql",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "GraphQL R client",
"topics": [
- "molecular-dynamics",
- "molecular-simulation",
- "force-field",
- "python",
- "atom-typing",
- "foyer",
- "disseminating-forcefields"
+ "graphql",
+ "graphql-client",
+ "rstats",
+ "r",
+ "graphql-api",
+ "r-package",
+ "API",
+ "curl",
+ "data",
+ "GraphQL",
+ "http",
+ "web-services",
+ "http-tools"
]
},
{
- "uid": "github/mosdef-hub/mbuild",
- "url": "https://github.com/mosdef-hub/mbuild",
- "rel": "/software/repository/github/mosdef-hub/mbuild",
- "avatar": "https://avatars.githubusercontent.com/u/25673981?v=4",
- "description": "A hierarchical, component based molecule builder",
+ "uid": "github/ropensci/pathviewr",
+ "url": "https://github.com/ropensci/pathviewr",
+ "rel": "/software/repository/github/ropensci/pathviewr",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "\ud83d\udc26 Tools to import, clean, and visualize animal movement data in R",
"topics": [
- "molecular-dynamics",
- "python",
- "molecular-simulation",
- "molecule-builder",
- "mbuild"
+ "movement-data",
+ "motion",
+ "animal-movement",
+ "optitrack",
+ "flydra",
+ "visual-guidance",
+ "visual-perception",
+ "rstats",
+ "rstats-package",
+ "trajectory-analysis",
+ "trajectories",
+ "data-extraction"
]
},
{
- "uid": "github/QCUncertainty/sigma",
- "url": "https://github.com/QCUncertainty/sigma",
- "rel": "/software/repository/github/QCUncertainty/sigma",
- "avatar": "https://avatars.githubusercontent.com/u/168684162?v=4",
- "description": "C++ Uncertainty Propagation",
- "topics": []
+ "uid": "github/ropensci/ezknitr",
+ "url": "https://github.com/ropensci/ezknitr",
+ "rel": "/software/repository/github/ropensci/ezknitr",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Avoid the typical working directory pain when using 'knitr'",
+ "topics": [
+ "rmarkdown",
+ "knitr",
+ "rmd",
+ "reproducibility",
+ "r",
+ "rstats",
+ "r-package",
+ "peer-reviewed",
+ "scalereprod"
+ ]
},
{
- "uid": "github/kathlandgren/SWAMPE",
- "url": "https://github.com/kathlandgren/SWAMPE",
- "rel": "/software/repository/github/kathlandgren/SWAMPE",
- "avatar": "https://avatars.githubusercontent.com/u/78450083?v=4",
- "description": "2D spectral-core shallow-water exoplanet atmosphere model",
- "topics": []
+ "uid": "github/ropensci/UCSCXenaTools",
+ "url": "https://github.com/ropensci/UCSCXenaTools",
+ "rel": "/software/repository/github/ropensci/UCSCXenaTools",
+ "avatar": "https://avatars3.githubusercontent.com/u/1200269?v=4",
+ "description": ":package: An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/",
+ "topics": [
+ "ucsc-xena",
+ "downloader",
+ "api-client",
+ "tcga",
+ "ccle",
+ "icgc",
+ "ucsc",
+ "toil",
+ "treehouse",
+ "r",
+ "bioinformatics"
+ ]
},
{
- "uid": "github/lucianolorenti/ceruleo",
- "url": "https://github.com/lucianolorenti/ceruleo",
- "rel": "/software/repository/github/lucianolorenti/ceruleo",
- "avatar": "https://avatars.githubusercontent.com/u/106397?v=4",
- "description": "CeRULEo: Comprehensive utilitiEs for Remaining Useful Life Estimation methOds",
+ "uid": "github/ropensci/EndoMineR",
+ "url": "https://github.com/ropensci/EndoMineR",
+ "rel": "/software/repository/github/ropensci/EndoMineR",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Endoscopic and Pathological data extraction for various endo-pathological data extraction",
"topics": [
- "predictive-maintenance",
- "time-series",
- "remaining-useful-life",
- "remaining-useful-life-prediction"
+ "r",
+ "rstats",
+ "endoscopy",
+ "gastroenterology",
+ "semi-structured-data",
+ "text-mining",
+ "r-package",
+ "peer-reviewed",
+ "data-access"
]
},
{
- "uid": "github/megbedell/wobble",
- "url": "https://github.com/megbedell/wobble",
- "rel": "/software/repository/github/megbedell/wobble",
- "avatar": "https://avatars.githubusercontent.com/u/13722237?v=4",
- "description": "precise data-driven RV fitting, now with tellurics!",
+ "uid": "github/ropensci/antanym",
+ "url": "https://github.com/ropensci/antanym",
+ "rel": "/software/repository/github/ropensci/antanym",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "R package for Antarctic geographic placenames",
"topics": [
- "astronomy",
- "spectroscopy",
- "exoplanet-radial-velocities",
- "tensorflow"
+ "peer-reviewed",
+ "r",
+ "r-package",
+ "rstats",
+ "Antarctic",
+ "gazetteer",
+ "placenames",
+ "SouthernOcean",
+ "data-access"
]
},
{
- "uid": "github/jhayer/baargin",
- "url": "https://github.com/jhayer/baargin",
- "rel": "/software/repository/github/jhayer/baargin",
- "avatar": "https://avatars.githubusercontent.com/u/8300623?v=4",
- "description": "Bacterial Assembly and Antimicrobial Resistance Genes In NextFlow",
+ "uid": "github/ropensci/rcitoid",
+ "url": "https://github.com/ropensci/rcitoid",
+ "rel": "/software/repository/github/ropensci/rcitoid",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Citation data via Wikimedia using the Citoid service ",
"topics": [
- "antimicrobial-resistance",
- "bacteria",
- "genomics",
- "wgs",
- "nextflow-pipeline",
- "workflow"
+ "r",
+ "rstats",
+ "api-client",
+ "wikimedia",
+ "citoid",
+ "doi",
+ "pmid",
+ "pmcid",
+ "isbn",
+ "r-package",
+ "citations",
+ "Citoid",
+ "literature",
+ "publications",
+ "text-ming",
+ "Wikicite",
+ "Wikipedia",
+ "literature"
]
},
{
- "uid": "github/nickk124/RCR",
- "url": "https://github.com/nickk124/RCR",
- "rel": "/software/repository/github/nickk124/RCR",
- "avatar": "https://avatars.githubusercontent.com/u/37184532?v=4",
- "description": "Robust Chauvenet Rejection: RCR is advanced, but easy to use, outlier rejection.",
+ "uid": "github/ropensci/nbaR",
+ "url": "https://github.com/ropensci/nbaR",
+ "rel": "/software/repository/github/ropensci/nbaR",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "R client library for the Netherlands Biodiversity Api (NBA)",
"topics": [
- "outlier-rejection",
- "outlier-detection",
- "regression",
- "robust",
- "robust-statistics"
+ "r",
+ "biodiversity-data",
+ "api-client",
+ "data-access"
]
},
{
- "uid": "github/DorianDepriester/mtex2Gmsh",
- "url": "https://github.com/DorianDepriester/MTEX2Gmsh",
- "rel": "/software/repository/github/DorianDepriester/mtex2Gmsh",
- "avatar": "https://avatars3.githubusercontent.com/u/7643875?v=4",
- "description": "Matlab toolbox for generating 2D meshes from EBSD data",
- "topics": []
+ "uid": "github/ropensci/finch",
+ "url": "https://github.com/ropensci/finch",
+ "rel": "/software/repository/github/ropensci/finch",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Read Darwin Core Archive files",
+ "topics": [
+ "rstats",
+ "darwin-core",
+ "darwincore",
+ "biodiversity",
+ "gbif",
+ "r",
+ "r-package",
+ "biology",
+ "collections",
+ "occurrences",
+ "species",
+ "specimen",
+ "data-extraction"
+ ]
},
{
- "uid": "github/KeckObservatory/tilsotua",
- "url": "https://github.com/KeckObservatory/tilsotua",
- "rel": "/software/repository/github/KeckObservatory/tilsotua",
- "avatar": "https://avatars.githubusercontent.com/u/33301640?v=4",
- "description": null,
- "topics": []
+ "uid": "github/ropensci/visdat",
+ "url": "https://github.com/ropensci/visdat",
+ "rel": "/software/repository/github/ropensci/visdat",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Preliminary Exploratory Visualisation of Data",
+ "topics": [
+ "missingness",
+ "visualisation",
+ "r",
+ "exploratory-data-analysis",
+ "ropensci",
+ "r-package",
+ "rstats",
+ "peer-reviewed",
+ "data-visualization"
+ ]
},
{
- "uid": "github/abmantz/lmc",
- "url": "https://github.com/abmantz/lmc",
- "rel": "/software/repository/github/abmantz/lmc",
- "avatar": "https://avatars.githubusercontent.com/u/10962486?v=4",
- "description": "Logarithmantic Monte Carlo",
+ "uid": "github/ropensci/geojsonio",
+ "url": "https://github.com/ropensci/geojsonio",
+ "rel": "/software/repository/github/ropensci/geojsonio",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Convert many data formats to & from GeoJSON & TopoJSON",
"topics": [
- "monte-carlo",
- "python",
- "sampler"
+ "geojson",
+ "topojson",
+ "io",
+ "rstats",
+ "r",
+ "r-package",
+ "conversion",
+ "data",
+ "geospatial",
+ "input-output",
+ "geospatial"
]
},
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- "uid": "github/abmantz/rgw",
- "url": "https://github.com/abmantz/rgw",
- "rel": "/software/repository/github/abmantz/rgw",
- "avatar": "https://avatars.githubusercontent.com/u/10962486?v=4",
- "description": "A lightweight R-language implementation of the affine-invariant sampling method of Goodman & Weare (2010)",
+ "uid": "github/ropensci/antiword",
+ "url": "https://github.com/ropensci/antiword",
+ "rel": "/software/repository/github/ropensci/antiword",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "R wrapper for antiword utility",
"topics": [
- "statistics",
- "markov-chain-monte-carlo"
+ "antiword",
+ "extract-text",
+ "r",
+ "rstats",
+ "r-package",
+ "literature"
]
},
{
- "uid": "github/abmantz/lrgs",
- "url": "https://github.com/abmantz/lrgs",
- "rel": "/software/repository/github/abmantz/lrgs",
- "avatar": "https://avatars.githubusercontent.com/u/10962486?v=4",
- "description": "Code to perform multivariate linear regression using Gibbs sampling",
+ "uid": "github/ropensci/popler",
+ "url": "https://github.com/ropensci/popler",
+ "rel": "/software/repository/github/ropensci/popler",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "The R package to browse and query the popler database",
"topics": [
- "linear-regression",
- "multivariate-regression",
- "gibbs-sampler"
+ "data-access"
]
},
{
- "uid": "github/wm75/vaporup",
- "url": "https://github.com/wm75/vaporup",
- "rel": "/software/repository/github/wm75/vaporup",
- "avatar": "https://avatars.githubusercontent.com/u/4742081?v=4",
- "description": null,
- "topics": []
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- "url": "https://github.com/open-aviation/tangram",
- "rel": "/software/repository/github/open-aviation/tangram",
- "avatar": "https://avatars.githubusercontent.com/u/104085040?v=4",
- "description": "An open platform for modular, real-time aviation research",
- "topics": []
- },
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- "url": "https://github.com/AFD-Illinois/iharm3d",
- "rel": "/software/repository/github/AFD-Illinois/iharm3d",
- "avatar": "https://avatars.githubusercontent.com/u/10577421?v=4",
- "description": "Hybrid MPI/OpenMP 3D HARM with vectorization",
- "topics": []
+ "uid": "github/ropensci/Rpolyhedra",
+ "url": "https://github.com/ropensci/Rpolyhedra",
+ "rel": "/software/repository/github/ropensci/Rpolyhedra",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "A polyhedra database scraped from public available sources using R6 (OOP) and 'rgl' visualizing capabilities. ",
+ "topics": [
+ "polyhedra-database",
+ "geometry",
+ "rgl",
+ "data-extraction"
+ ]
},
{
- "uid": "github/AFD-Illinois/ebhlight",
- "url": "https://github.com/AFD-Illinois/ebhlight",
- "rel": "/software/repository/github/AFD-Illinois/ebhlight",
- "avatar": "https://avatars.githubusercontent.com/u/10577421?v=4",
- "description": "Two-temperature General Relativistic Radiation Magnetohydrodynamics",
- "topics": []
+ "uid": "github/ropensci/gpg",
+ "url": "https://github.com/ropensci/gpg",
+ "rel": "/software/repository/github/ropensci/gpg",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Bindings to gpgme for R",
+ "topics": [
+ "gpgme"
+ ]
},
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- "url": "https://github.com/AngryMaciek/hypercomplex",
- "rel": "/software/repository/github/AngryMaciek/hypercomplex",
- "avatar": "https://avatars.githubusercontent.com/u/19755308?v=4",
- "description": "Abstract & fast header-only C++ template library for lattice-based cryptosystems in high-dimensional algebras",
+ "uid": "github/ropensci/tesseract",
+ "url": "https://github.com/ropensci/tesseract",
+ "rel": "/software/repository/github/ropensci/tesseract",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Bindings to Tesseract OCR engine for R",
"topics": [
- "algebra",
- "mathematics",
- "precision",
- "cryptography",
- "post-quantum-cryptography"
+ "tesseract",
+ "ocr",
+ "r",
+ "rstats",
+ "r-package",
+ "tesseract-ocr",
+ "image-processing"
]
},
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- "url": "https://github.com/zooniverse/starpy",
- "rel": "/software/repository/github/zooniverse/starpy",
- "avatar": "https://avatars.githubusercontent.com/u/106856?v=4",
- "description": "Code to determine sfh parameters of galaxy populations with emcee",
- "topics": []
+ "uid": "github/ropensci/RSelenium",
+ "url": "https://github.com/ropensci/RSelenium",
+ "rel": "/software/repository/github/ropensci/RSelenium",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "An R client for Selenium Remote WebDriver",
+ "topics": [
+ "rselenium",
+ "webdriver",
+ "selenium",
+ "r",
+ "rstats",
+ "r-package",
+ "http-tools"
+ ]
},
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+ "healthcare",
+ "big-data",
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+ "description": "R interface for the World Bank climate data",
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+ "description": "A frictionless, pipeable approach to dealing with summary statistics",
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- "defects",
- "semiconductors",
- "electronic-structure",
- "materials-design",
- "solar-cells"
+ "unconf17",
+ "r",
+ "summary-statistics",
+ "ropensci",
+ "unconf",
+ "r-package",
+ "rstats",
+ "peer-reviewed",
+ "scalereprod"
]
},
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- "rel": "/software/repository/github/WMD-group/SMACT",
- "avatar": "https://avatars.githubusercontent.com/u/1716969?v=4",
- "description": "Python package to aid materials design",
+ "uid": "github/ropensci/elastic",
+ "url": "https://github.com/ropensci/elastic",
+ "rel": "/software/repository/github/ropensci/elastic",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "R client for the Elasticsearch HTTP API",
"topics": [
- "materials-science",
- "materials-informatics",
- "materials-screening",
- "materials-design",
- "machine-learning"
+ "elasticsearch",
+ "http",
+ "database",
+ "database-wrapper",
+ "json",
+ "rstats",
+ "r",
+ "r-package",
+ "data-science",
+ "etl",
+ "API",
+ "documents",
+ "Elasticsearch",
+ "HTTP",
+ "Java",
+ "JSON",
+ "NoSQL",
+ "search",
+ "databases"
]
},
{
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- "url": "https://github.com/WMD-group/Eris",
- "rel": "/software/repository/github/WMD-group/Eris",
- "avatar": "https://avatars.githubusercontent.com/u/1716969?v=4",
- "description": "Monte Carlo codes to simulate cation disorder in kesterite semiconductors",
+ "uid": "github/ropensci/wikitaxa",
+ "url": "https://github.com/ropensci/wikitaxa",
+ "rel": "/software/repository/github/ropensci/wikitaxa",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "taxonomy data from Wikipedia/Wikidata/Wikispecies",
"topics": [
- "monte-carlo",
- "photovoltaic",
- "materials",
- "thermodynamics",
- "physics",
- "semiconductor",
- "defects"
+ "taxonomy",
+ "wikipedia-api",
+ "wikispecies",
+ "r",
+ "rstats",
+ "r-package",
+ "taxize",
+ "API",
+ "species",
+ "vernacular",
+ "web-services",
+ "Wikicommons",
+ "Wikipedia",
+ "Wikispecies"
]
},
{
- "uid": "github/WMD-group/MacroDensity",
- "url": "https://github.com/WMD-group/MacroDensity",
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- "avatar": "https://avatars.githubusercontent.com/u/1716969?v=4",
- "description": "Analyse electron density & potential grids using Python",
+ "uid": "github/ropensci/rentrez",
+ "url": "https://github.com/ropensci/rentrez",
+ "rel": "/software/repository/github/ropensci/rentrez",
+ "avatar": "https://avatars3.githubusercontent.com/u/1200269?v=4",
+ "description": "talk with NCBI entrez using R",
"topics": [
- "electrostatic-potential",
- "ionisation-potential",
- "workfunction",
- "density-functional-theory",
- "vasp",
- "semiconductor-physics"
+ "r",
+ "rstats",
+ "r-package"
]
},
{
- "uid": "github/WMD-group/StarryNight",
- "url": "https://github.com/WMD-group/StarryNight",
- "rel": "/software/repository/github/WMD-group/StarryNight",
- "avatar": "https://avatars.githubusercontent.com/u/1716969?v=4",
- "description": "Monte Carlo codes to simulate polar domains in hybrid perovskite solar cells",
+ "uid": "github/ropensci/refimpact",
+ "url": "https://github.com/ropensci/refimpact",
+ "rel": "/software/repository/github/ropensci/refimpact",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "API wrapper for UK Research Excellence Framework 2014 Impact Case Studies Database",
"topics": [
- "monte-carlo-codes",
- "ferroelectric-domains",
- "perovskite",
- "photovoltaic",
- "monte-carlo",
- "dipole-domains",
- "recombination",
- "semiconductor"
+ "uk",
+ "research-funding",
+ "research-improvement",
+ "directed-graph",
+ "directed-graphs",
+ "text-mining",
+ "research-policy",
+ "r",
+ "rstats",
+ "r-package",
+ "peer-reviewed",
+ "literature"
]
},
{
- "uid": "github/agorajs/agora-forbid",
- "url": "https://github.com/agorajs/agora-forbid",
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- "avatar": "https://avatars.githubusercontent.com/u/55066786?v=4",
- "description": null,
- "topics": []
+ "uid": "github/ropensci/bibtex",
+ "url": "https://github.com/ropensci/bibtex",
+ "rel": "/software/repository/github/ropensci/bibtex",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "bibtex parser for R",
+ "topics": [
+ "bibtex",
+ "parser",
+ "r",
+ "literature"
+ ]
},
{
- "uid": "github/agorajs/agora-vpsc",
- "url": "https://github.com/agorajs/agora-vpsc",
- "rel": "/software/repository/github/agorajs/agora-vpsc",
- "avatar": "https://avatars.githubusercontent.com/u/55066786?v=4",
- "description": "VPSC adapter for agora-framework",
- "topics": []
+ "uid": "github/ropensci/gitignore",
+ "url": "https://github.com/ropensci/gitignore",
+ "rel": "/software/repository/github/ropensci/gitignore",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "A R interface to fetch gitignore templates form gitignore.io",
+ "topics": [
+ "scalereprod"
+ ]
},
{
- "uid": "github/ropensci-archive/reviewer",
- "url": "https://github.com/ropensci-archive/reviewer",
- "rel": "/software/repository/github/ropensci-archive/reviewer",
- "avatar": "https://avatars.githubusercontent.com/u/68704009?v=4",
- "description": ":no_entry: ARCHIVED :no_entry: Improving the track changes and reviewing experience in R markdown",
+ "uid": "github/ropensci/lightr",
+ "url": "https://github.com/ropensci/lightr",
+ "rel": "/software/repository/github/ropensci/lightr",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Import spectral data and related metadata in R",
"topics": [
- "ozunconf18",
- "unconf",
"r",
+ "spectroscopy",
+ "spectral-data",
+ "reproducible-research",
+ "reproducible-science",
+ "reproducibility",
"r-package",
- "rstats",
- "ozunconf18",
- "unconf",
- "scalereprod"
+ "file-import",
+ "data-extraction"
]
},
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- "uid": "github/ropensci-archive/monkeylearn",
- "url": "https://github.com/ropensci-archive/monkeylearn",
- "rel": "/software/repository/github/ropensci-archive/monkeylearn",
- "avatar": "https://avatars.githubusercontent.com/u/68704009?v=4",
- "description": ":no_entry: ARCHIVED :no_entry: :monkey: R package for text analysis with Monkeylearn :monkey:",
+ "uid": "github/ropensci/assertr",
+ "url": "https://github.com/ropensci/assertr",
+ "rel": "/software/repository/github/ropensci/assertr",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Assertive programming for R analysis pipelines",
"topics": [
- "monkeylearn",
- "nlp",
- "nlp-machine-learning",
- "extractor",
- "classifier",
+ "predicate-functions",
+ "analysis-pipeline",
+ "assertions",
+ "assertion-methods",
+ "assertion-library",
"r",
"rstats",
"r-package",
"peer-reviewed",
- "classifier",
- "extractor",
- "monkeylearn",
- "nlp",
- "nlp-machine-learning",
- "peer-reviewed",
- "data-access"
+ "scalereprod"
]
},
{
- "uid": "github/ropensci-archive/rodev",
- "url": "https://github.com/ropensci-archive/rodev",
- "rel": "/software/repository/github/ropensci-archive/rodev",
- "avatar": "https://avatars.githubusercontent.com/u/68704009?v=4",
- "description": "Helpers for rOpenSci Package Authors :package: :sparkles:",
+ "uid": "github/ropensci/pixelclasser",
+ "url": "https://github.com/ropensci/pixelclasser",
+ "rel": "/software/repository/github/ropensci/pixelclasser",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Classifies Image Pixels by Colour",
+ "topics": [
+ "image-processing"
+ ]
+ },
+ {
+ "uid": "github/ropensci/EML",
+ "url": "https://github.com/ropensci/EML",
+ "rel": "/software/repository/github/ropensci/EML",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": " Ecological Metadata Language interface for R: synthesis and integration of heterogenous data",
"topics": [
+ "metadata-standard",
+ "eml",
+ "eml-metadata",
"r",
- "r-package",
"rstats",
- "scalereprod"
+ "r-package",
+ "data-publication"
]
},
{
- "uid": "github/ropensci-archive/arresteddev",
- "url": "https://github.com/ropensci-archive/arresteddev",
- "rel": "/software/repository/github/ropensci-archive/arresteddev",
- "avatar": "https://avatars.githubusercontent.com/u/68704009?v=4",
- "description": "Arrested Development",
+ "uid": "github/ropensci/rtweet",
+ "url": "https://github.com/ropensci/rtweet",
+ "rel": "/software/repository/github/ropensci/rtweet",
+ "avatar": "https://avatars3.githubusercontent.com/u/1200269?v=4",
+ "description": "\ud83d\udc26 R client for interacting with Twitter's [stream and REST] APIs",
"topics": [
- "unconf17",
- "r",
+ "rtweet",
+ "r-rtweet",
+ "r-twitter",
+ "twitter",
+ "twitter-api",
+ "stream-api",
+ "rest-api",
+ "cran",
+ "tweets",
"r-package",
- "rstats",
- "unconf",
- "unconf",
- "unconf17"
+ "r",
+ "mkearney-r-package"
]
},
{
- "uid": "github/lys-devel/lys",
- "url": "https://github.com/lys-devel/lys",
- "rel": "/software/repository/github/lys-devel/lys",
- "avatar": "https://avatars.githubusercontent.com/u/136776639?v=4",
- "description": "Interactive multi-dimensional data analysis and visualization",
- "topics": []
+ "uid": "github/ropensci/DataSpaceR",
+ "url": "https://github.com/ropensci/DataSpaceR",
+ "rel": "/software/repository/github/ropensci/DataSpaceR",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "R Interface to the CAVD DataSpace",
+ "topics": [
+ "cavd-dataspace",
+ "data-access"
+ ]
},
{
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- "url": "https://github.com/eScatter/pyelsepa",
- "rel": "/software/repository/github/eScatter/pyelsepa",
- "avatar": "https://avatars0.githubusercontent.com/u/18676359?v=4",
- "description": "A Python wrapper for ELSEPA",
- "topics": []
+ "uid": "github/ropensci/eia",
+ "url": "https://github.com/ropensci/eia",
+ "rel": "/software/repository/github/ropensci/eia",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "An R package wrapping the US Energy Information Administration open data API.",
+ "topics": [
+ "eia-api",
+ "r-package",
+ "energy-data",
+ "energy-information-administration",
+ "open-data",
+ "eia",
+ "cran",
+ "data-access"
+ ]
},
{
- "uid": "github/BradyAJohnston/MolecularNodes",
- "url": "https://github.com/BradyAJohnston/MolecularNodes",
- "rel": "/software/repository/github/BradyAJohnston/MolecularNodes",
- "avatar": "https://avatars.githubusercontent.com/u/36021261?v=4",
- "description": "Toolbox for molecular animations in Blender, powered by Geometry Nodes.",
+ "uid": "github/ropensci/outsider",
+ "url": "https://github.com/ropensci/outsider",
+ "rel": "/software/repository/github/ropensci/outsider",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": ":black_square_button::registered: Install and run programs, outside of R, inside of R",
"topics": [
- "blender",
- "biochemistry",
- "geometry-nodes",
- "protein",
- "protein-structure",
- "protein-visualization",
- "sciart",
- "visualisation",
- "structural-biology",
- "blender-addon",
- "protein-data-bank",
- "molecule",
- "proteins",
- "pdb",
- "molecular-modeling",
- "molecular",
- "molecular-graphics",
- "molecular-dynamics"
+ "docker",
+ "rstats",
+ "reproducibility",
+ "scalereprod"
]
},
{
- "uid": "github/1054/Crab.Toolkit.michi2",
- "url": "https://github.com/1054/Crab.Toolkit.michi2",
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- "avatar": "https://avatars.githubusercontent.com/u/6521499?v=4",
- "description": "crab minimum chi2 toolkit",
- "topics": []
- },
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- "url": "https://github.com/hiruna72/slow5-dorado",
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- "avatar": "https://avatars.githubusercontent.com/u/23216727?v=4",
- "description": "fork of dorado that supports S/BLOW5",
- "topics": []
- },
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- "url": "https://github.com/YaleTHz/nelly",
- "rel": "/software/repository/github/YaleTHz/nelly",
- "avatar": "https://avatars.githubusercontent.com/u/69858984?v=4",
- "description": "Nelly is a package for extracing refractice indices and conductivities from time-domain terahertz spectroscopy data",
+ "uid": "github/ropensci/prism",
+ "url": "https://github.com/ropensci/prism",
+ "rel": "/software/repository/github/ropensci/prism",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Download data from the Oregon PRISM climate data project http://www.prism.oregonstate.edu/",
"topics": [
- "terahertz",
- "conductivity",
- "spectroscopy",
- "refractive-index"
+ "r",
+ "rstats",
+ "r-package",
+ "data-access"
]
},
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- "uid": "github/jiangyuts/facetclumps",
- "url": "https://github.com/JiangYuTS/FacetClumps",
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- "description": "FacetClumps: A molecular clump detection algorithm based on Facet model",
- "topics": []
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- "description": "is a tool for classification of Influenza samples from raw short read sequence data for downstream bioinformatics analysis.",
- "topics": []
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- "avatar": "https://avatars.githubusercontent.com/u/79975160?v=4",
- "description": "Deep Insight And Neural Network Analysis",
- "topics": []
+ "uid": "github/ropensci/outsider.devtools",
+ "url": "https://github.com/ropensci/outsider.devtools",
+ "rel": "/software/repository/github/ropensci/outsider.devtools",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Build your own modules for `outsider`",
+ "topics": [
+ "rstats",
+ "docker",
+ "scalereprod"
+ ]
},
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- "url": "https://github.com/tberlok/paicos",
- "rel": "/software/repository/github/tberlok/paicos",
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- "description": "An object-oriented Python package for analysis of (cosmological) simulations performed with Arepo",
- "topics": []
+ "uid": "github/ropensci/rcol",
+ "url": "https://github.com/ropensci/rcol",
+ "rel": "/software/repository/github/ropensci/rcol",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "client for Catalogue of Life REST API",
+ "topics": [
+ "taxonomy",
+ "api-client",
+ "rstats",
+ "r",
+ "API",
+ "biology",
+ "science",
+ "species",
+ "web",
+ "data-access"
+ ]
},
{
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- "url": "https://github.com/hippalectryon-0/pyloggrid",
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- "avatar": "https://avatars.githubusercontent.com/u/6502864?v=4",
- "description": "Public docs for the python package pyloggrid",
- "topics": []
+ "uid": "github/ropensci/tracerer",
+ "url": "https://github.com/ropensci/tracerer",
+ "rel": "/software/repository/github/ropensci/tracerer",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "tracerer, 'Tracer for R', is an R package to work with the output of BEAST2",
+ "topics": [
+ "r",
+ "r-package",
+ "rstats",
+ "scalereprod"
+ ]
},
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- "avatar": "https://avatars.githubusercontent.com/u/25798013?v=4",
- "description": "R package fake (Flexible Data Simulation Using The Multivariate Normal Distribution).",
- "topics": []
+ "uid": "github/ropensci/mctq",
+ "url": "https://github.com/ropensci/mctq",
+ "rel": "/software/repository/github/ropensci/mctq",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "\u2600 Tools to process the Munich ChronoType Questionnaire (MCTQ)",
+ "topics": [
+ "chronobiology",
+ "mctq",
+ "sleep",
+ "r-package",
+ "peer-reviewed",
+ "r",
+ "rstats",
+ "data-extraction"
+ ]
},
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- "description": null,
- "topics": []
+ "uid": "github/ropensci/paleobioDB",
+ "url": "https://github.com/ropensci/paleobioDB",
+ "rel": "/software/repository/github/ropensci/paleobioDB",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "R interface to the Paleobiology Database",
+ "topics": [
+ "r",
+ "rstats",
+ "r-package",
+ "data-access"
+ ]
},
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- "description": null,
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+ "url": "https://github.com/ropensci/spiro",
+ "rel": "/software/repository/github/ropensci/spiro",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Work with data from cardiopulmonary exercise testing",
"topics": []
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- "rel": "/software/repository/github/finsberg/gotranx",
- "avatar": "https://avatars.githubusercontent.com/u/2010323?v=4",
- "description": "Next generation ODE translator",
+ "uid": "github/ropensci/rnoaa",
+ "url": "https://github.com/ropensci/rnoaa",
+ "rel": "/software/repository/github/ropensci/rnoaa",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "R interface to many NOAA data APIs",
"topics": [
- "ode",
- "parser",
- "parsing",
- "gotran",
- "code-generation"
+ "noaa",
+ "climate",
+ "rstats",
+ "noaa-data",
+ "r",
+ "r-package",
+ "buoy",
+ "earth",
+ "ISD",
+ "NCDC",
+ "NOAA",
+ "precipitation",
+ "science",
+ "seaice",
+ "storm",
+ "temperature",
+ "tornadoe",
+ "data-access"
]
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+ "rel": "/software/repository/github/ropensci/datapack",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "An R package to handle data packages",
"topics": [
- "cardiac",
- "ecg",
- "electrophysiology",
- "fenicsx",
- "finite-element-analysis",
- "monodomain-model"
+ "r",
+ "rstats",
+ "r-package",
+ "scalereprod"
]
},
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- "description": "Inflated Discrete Choice Models",
+ "uid": "github/ropensci/pendulum",
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+ "rel": "/software/repository/github/ropensci/pendulum",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "a date/time replacement pkg for R to facilitate time hacking",
"topics": [
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- "discrete-choice",
- "multinomial-logistic-regression",
- "ordered-probit-regression"
+ "r",
+ "rstats",
+ "time-mock",
+ "mock-time",
+ "scalereprod"
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- "linter"
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+ "ecology",
+ "foodwebs",
+ "interactions",
+ "networks",
+ "openaccess",
+ "data-access"
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"topics": [
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+ "taxonomy"
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+ "description": "R package for processing, organizing, and visualizing reference records downloaded from the Web of Science. ",
"topics": [
- "astrophysics",
- "astronomy",
- "python",
- "dynamics",
- "scientific-computing",
- "physics",
- "astropy-affiliated"
+ "bibliometrics",
+ "coauthorship",
+ "collaboration",
+ "georeferencing",
+ "metascience",
+ "namedisambiguation",
+ "references",
+ "scienceofscience",
+ "scientometrics",
+ "WebofScience",
+ "literature"
]
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+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": " A tool for measuring tree-ring width",
"topics": [
- "astrophysics",
- "python",
- "spectroscopy",
- "data",
- "data-analysis",
- "astronomy"
+ "r",
+ "tree-ring-width",
+ "shiny-apps",
+ "shinyapp",
+ "tree-rings",
+ "dendrochronology",
+ "forest",
+ "forestry",
+ "image-processing"
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+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "R interface to the Greek National Data Bank for Hydrometeorological Information",
"topics": [
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- "machine-learning",
- "gaussian-mixture-models",
- "python",
- "c",
- "uncertainty"
+ "climate",
+ "hydroscope",
+ "hydrometeorology",
+ "hydrology",
+ "tidy-data",
+ "time-series",
+ "greece",
+ "water-resources",
+ "meteorological-stations",
+ "meteorological-data",
+ "r",
+ "rstats",
+ "r-package",
+ "peer-reviewed",
+ "data-access"
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+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "R6 based http client for R (made for developers)",
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- "hpc",
- "linux"
+ "http",
+ "curl",
+ "async",
+ "rstats",
+ "api",
+ "r",
+ "r-package",
+ "API",
+ "caching",
+ "download",
+ "https",
+ "libcurl",
+ "mocking",
+ "web-services",
+ "http-tools"
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+ "databases"
]
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- "description": "Query Fast Radio Burst catalogues",
+ "uid": "github/ropensci/nodbi",
+ "url": "https://github.com/ropensci/nodbi",
+ "rel": "/software/repository/github/ropensci/nodbi",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Document DBI connector for R",
"topics": [
- "frbs"
+ "rstats",
+ "database",
+ "nosql",
+ "couchdb",
+ "mongodb",
+ "elasticsearch",
+ "r",
+ "r-package",
+ "sqlite",
+ "CouchDB",
+ "documents",
+ "Elasticsearch",
+ "JSON",
+ "MongoDB",
+ "NoSQL",
+ "PostgreSQL",
+ "SQLite",
+ "databases"
]
},
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- "avatar": "https://avatars.githubusercontent.com/u/467948?v=4",
- "description": "Protoplanetary Disk Modeling for Dynamical Mass Derivation",
+ "uid": "github/ropensci/hunspell",
+ "url": "https://github.com/ropensci/hunspell",
+ "rel": "/software/repository/github/ropensci/hunspell",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "High-Performance Stemmer, Tokenizer, and Spell Checker for R",
"topics": [
- "julia",
- "radmc-3d",
- "astronomy",
- "astrophysics",
- "radio-astronomy"
+ "spellchecker",
+ "hunspell",
+ "stemmer",
+ "tokenizer",
+ "spell-check",
+ "r",
+ "rstats",
+ "r-package",
+ "literature"
]
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- "description": "Tools for data-driven spectra models with Gaussian processes. Pronounced \"soap.\"",
+ "uid": "github/ropensci/coder",
+ "url": "https://github.com/ropensci/coder",
+ "rel": "/software/repository/github/ropensci/coder",
+ "avatar": "https://avatars3.githubusercontent.com/u/1200269?v=4",
+ "description": "Classification of Cases into Deterministic Categories",
"topics": [
- "astronomy",
- "spectroscopy",
- "radial",
- "velocity",
- "python",
- "gaussian-processes",
- "radial-velocities",
- "spectra",
- "exoplanet",
- "orbit"
+ "r",
+ "package",
+ "r-package",
+ "classification",
+ "icd-10",
+ "rstats"
]
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- "description": "Software tool for the compilation of Heta-based QSP modeling platform",
+ "uid": "github/ropensci/rnassqs",
+ "url": "https://github.com/ropensci/rnassqs",
+ "rel": "/software/repository/github/ropensci/rnassqs",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "R interface for the USDA National Agricultural Statistical Service's (NASS) 'Quick Stats' API (https://quickstats.nass.usda.gov/api)",
"topics": [
- "pharmacokinetics",
- "pharmacometrics",
- "pharmacodynamics",
- "systems-pharmacology",
- "systems-biology"
+ "data-access"
]
},
{
- "uid": "github/kylejgillett/sounderpy",
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- "avatar": "https://avatars.githubusercontent.com/u/100786530?v=4",
- "description": "SounderPy is an open-source Python package for retrieving, processing, and visualizing atmospheric sounding data.",
+ "uid": "github/ropensci/dataspice",
+ "url": "https://github.com/ropensci/dataspice",
+ "rel": "/software/repository/github/ropensci/dataspice",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": ":hot_pepper: Create lightweight schema.org descriptions of your datasets",
"topics": [
- "data-analysis-python",
- "meteorology",
- "python",
- "weather",
- "weather-data",
- "atmospheric-science",
- "atmospheric-sciences"
+ "unconf18",
+ "schema-org",
+ "metadata",
+ "data",
+ "dataset",
+ "r",
+ "r-package",
+ "rstats",
+ "unconf",
+ "data-publication"
]
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- "description": "ngsPETSc Docs",
- "topics": []
- },
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- "description": "Hi-COLA simulates cosmological large-scale structure for a wide class of Horndeski theories. Built using a COLA solver forked from FML by HAWinther.",
- "topics": []
- },
- {
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- "avatar": "https://avatars.githubusercontent.com/u/126984097?v=4",
- "description": "A Python package for the validation of heart rate and heart rate variability in wearables",
+ "uid": "github/ropensci/geojsonlint",
+ "url": "https://github.com/ropensci/geojsonlint",
+ "rel": "/software/repository/github/ropensci/geojsonlint",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "GeoJSON linting for R (THIS IS NOT THE SRC FOR geojsonlint.com)",
"topics": [
- "heart-rate",
- "heart-rate-variability",
- "hrv",
- "psychophysiology",
- "python",
- "wearables",
- "validation"
+ "geojson",
+ "linter",
+ "r",
+ "rstats",
+ "r-package",
+ "data",
+ "geospatial",
+ "hint",
+ "lint",
+ "schema",
+ "geospatial"
]
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- "description": "Non-Gaussian Likelihood Approximations",
- "topics": []
+ "uid": "github/ropensci/rdefra",
+ "url": "https://github.com/ropensci/rdefra",
+ "rel": "/software/repository/github/ropensci/rdefra",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "rdefra: Interact with the UK AIR Pollution Database from DEFRA",
+ "topics": [
+ "r",
+ "rstats",
+ "r-package",
+ "uk",
+ "defra",
+ "air-pollution",
+ "air-quality",
+ "air-pollution-levels",
+ "peer-reviewed",
+ "data-access"
+ ]
},
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- "avatar": "https://avatars.githubusercontent.com/u/251150?v=4",
- "description": "Fast KD-tree MPI correlation statistics package - Author: Cristiano Sabiu",
- "topics": []
+ "uid": "github/ropensci/osmapiR",
+ "url": "https://github.com/ropensci/osmapiR",
+ "rel": "/software/repository/github/ropensci/osmapiR",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "An R interface to OpenStreetMap API for fetching and saving data from/to the OpenStreetMap database",
+ "topics": [
+ "openstreetmap",
+ "openstreetmap-api",
+ "osm",
+ "r",
+ "r-package",
+ "osmapi"
+ ]
},
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- "uid": "github/cosmicrays/DRAGON",
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- "avatar": "https://avatars.githubusercontent.com/u/20685298?v=4",
- "description": "First version of the code - last update Dec 2015",
+ "uid": "github/ropensci/rAvis",
+ "url": "https://github.com/ropensci/rAvis",
+ "rel": "/software/repository/github/ropensci/rAvis",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "rAvis: an R-package to download the information stored in \u201cproyectoavis\u201d, a citizen science bird project. ",
"topics": [
- "cosmic-rays",
- "dark-matter",
- "interstellar-medium",
- "astroparticle",
- "radiative-processes",
- "gamma-ray-astronomy",
- "neutrino-astronomy"
+ "r",
+ "rstats",
+ "avis",
+ "citizen-science",
+ "bird",
+ "birds",
+ "proyectoavis",
+ "r-package",
+ "data-access"
]
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- "description": "HERMES is a publicly available computational framework for the line of sight integration over galactic radiative processes which creates sky maps in the HEALPix-compatibile format.",
+ "uid": "github/ropensci/bowerbird",
+ "url": "https://github.com/ropensci/bowerbird",
+ "rel": "/software/repository/github/ropensci/bowerbird",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Keep a collection of sparkly data resources",
"topics": [
- "astroparticle-physics",
- "gamma-ray-astronomy",
- "neutrino-astronomy",
- "synchrotron",
- "cosmic-rays",
- "galactic-radiative-processes",
- "healpix"
+ "r",
+ "rstats",
+ "r-package",
+ "peer-reviewed",
+ "Antarctic",
+ "climate",
+ "data",
+ "environmental",
+ "ropensci",
+ "satellite",
+ "SouthernOcean",
+ "scalereprod"
]
},
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- "avatar": "https://avatars.githubusercontent.com/u/18563618?v=4",
- "description": "Fast Holographic Deconvolution",
- "topics": []
+ "uid": "github/ropensci/taxview",
+ "url": "https://github.com/ropensci/taxview",
+ "rel": "/software/repository/github/ropensci/taxview",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Summarise and visualize data sets wrt taxonomy",
+ "topics": [
+ "r",
+ "rstats",
+ "r-package",
+ "taxonomy"
+ ]
},
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- "url": "https://github.com/xiaochuanle/MECAT2",
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- "avatar": "https://avatars.githubusercontent.com/u/86280?v=4",
- "description": "ultra-fast and accurate de novo assembly tools for SMRT reads",
- "topics": []
+ "uid": "github/ropensci/rbace",
+ "url": "https://github.com/ropensci/rbace",
+ "rel": "/software/repository/github/ropensci/rbace",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "BASE R client",
+ "topics": [
+ "api-wrapper",
+ "scholarly-metadata",
+ "rstats",
+ "r",
+ "r-package",
+ "citations",
+ "literature",
+ "scholarly",
+ "search",
+ "text-ming",
+ "data-access"
+ ]
},
{
- "uid": "github/julianreul/mode_behave",
- "url": "https://github.com/julianreul/mode_behave",
- "rel": "/software/repository/github/julianreul/mode_behave",
- "avatar": "https://avatars.githubusercontent.com/u/42872728?v=4",
- "description": "A Python package for estimating mixed logit models with nonparametric distributions",
- "topics": []
+ "uid": "github/ropensci/internetarchive",
+ "url": "https://github.com/ropensci/internetarchive",
+ "rel": "/software/repository/github/ropensci/internetarchive",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Search the Internet Archive, retrieve metadata, and download files",
+ "topics": [
+ "r",
+ "rstats",
+ "r-package",
+ "data-access"
+ ]
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- "avatar": "https://avatars.githubusercontent.com/u/66997677?v=4",
- "description": "Automatic and adaptive BZ integration for electronic properties",
- "topics": []
+ "uid": "github/ropensci/restez",
+ "url": "https://github.com/ropensci/restez",
+ "rel": "/software/repository/github/ropensci/restez",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": ":sleeping: :open_file_folder: Create and Query a Local Copy of GenBank in R",
+ "topics": [
+ "genbank",
+ "dna",
+ "sequence",
+ "entrez",
+ "r",
+ "r-package",
+ "rstats",
+ "data-extraction"
+ ]
},
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- "avatar": "https://avatars2.githubusercontent.com/u/64437600?v=4",
- "description": null,
- "topics": []
+ "uid": "github/ropensci/tidync",
+ "url": "https://github.com/ropensci/tidync",
+ "rel": "/software/repository/github/ropensci/tidync",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "NetCDF exploration and data extraction",
+ "topics": [
+ "geospatial"
+ ]
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- "avatar": "https://avatars.githubusercontent.com/u/58938451?v=4",
- "description": "The algorithmic differentation tool pyadjoint and add-ons.",
- "topics": []
+ "uid": "github/ropensci/treedata.table",
+ "url": "https://github.com/ropensci/treedata.table",
+ "rel": "/software/repository/github/ropensci/treedata.table",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "A wrapper for data.table that enables fast manipulation of phylogenetic trees matched to data.",
+ "topics": [
+ "data-extraction"
+ ]
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- "url": "https://github.com/FerielRamdhane/Image-Quality-Assessment-metrics-IQA-for-XNAT-platform",
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- "avatar": "https://avatars.githubusercontent.com/u/35070749?v=4",
- "description": "A repository sharing docker images to check the quality of Medical DICOM images on XNAT platform",
+ "uid": "github/ropensci/lingtypology",
+ "url": "https://github.com/ropensci/lingtypology",
+ "rel": "/software/repository/github/ropensci/lingtypology",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "R package for linguistic cartography and typological databases search",
"topics": [
- "mutual-information",
- "snr",
- "sharpness-index",
- "quality-control",
- "xnat-containers"
+ "clld",
+ "linguistics",
+ "typology",
+ "linguistic-maps",
+ "autotype",
+ "wals",
+ "phoible",
+ "glottolog-database",
+ "afbo",
+ "sails",
+ "abvd",
+ "atlas",
+ "r",
+ "r-package",
+ "bivaltyp",
+ "literature"
]
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- "avatar": "https://avatars.githubusercontent.com/u/10228299?v=4",
- "description": "RTG Tools: Utilities for accurate VCF comparison and manipulation",
- "topics": []
+ "uid": "github/ropensci/drake",
+ "url": "https://github.com/ropensci/drake",
+ "rel": "/software/repository/github/ropensci/drake",
+ "avatar": "https://avatars3.githubusercontent.com/u/1200269?v=4",
+ "description": "An R-focused pipeline toolkit for reproducibility and high-performance computing",
+ "topics": [
+ "reproducibility",
+ "high-performance-computing",
+ "r",
+ "data-science",
+ "drake",
+ "makefile",
+ "pipeline",
+ "workflow",
+ "reproducible-research",
+ "rstats",
+ "r-package",
+ "ropensci",
+ "peer-reviewed"
+ ]
},
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- "description": "A Python automated geometric generation tool that generates 3D meshes of prismatic cellular solids with radial growth rules based on Voronoi diagrams.",
- "topics": []
+ "uid": "github/ropensci/stplanr",
+ "url": "https://github.com/ropensci/stplanr",
+ "rel": "/software/repository/github/ropensci/stplanr",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Sustainable transport planning with R",
+ "topics": [
+ "r",
+ "transport",
+ "spatial",
+ "rstats",
+ "r-package",
+ "peer-reviewed",
+ "transport-planning",
+ "walking",
+ "cycling",
+ "pubic-transport",
+ "origin-destination",
+ "desire-lines",
+ "routes",
+ "routing",
+ "route-network",
+ "transportation",
+ "cycle",
+ "data-access"
+ ]
},
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- "rel": "/software/repository/github/nedtaylor/athena",
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- "description": "A Fortran-based feed-forward neural network library. Whilst this library currently has a focus on 3D convolutional neural networks (CNNs), it can handle most standard hidden layer forms of neural networks, with the plan to integrate more.",
+ "uid": "github/ropensci/rdryad",
+ "url": "https://github.com/ropensci/rdryad",
+ "rel": "/software/repository/github/ropensci/rdryad",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "R client for Dryad web services",
"topics": [
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- "feed-forward-neural-networks",
- "fortran",
- "machine-learning",
- "neural-network",
- "convolutional-neural-networks",
- "cnn"
+ "dryad-api",
+ "dryad",
+ "data",
+ "doi",
+ "oai-pmh",
+ "r",
+ "rstats",
+ "r-package",
+ "data-access"
]
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- "description": "Python port of B. Kelly's LINMIX_ERR IDL package",
- "topics": []
+ "uid": "github/ropensci/parzer",
+ "url": "https://github.com/ropensci/parzer",
+ "rel": "/software/repository/github/ropensci/parzer",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Parse geographic coordinates",
+ "topics": [
+ "r",
+ "rstats",
+ "geo",
+ "geospatial",
+ "parser",
+ "coordinates",
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+ "latitude",
+ "longitude"
+ ]
},
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- "description": "An R package for the National Oceanic and Atmospheric Administration dam impact analysis",
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+ "url": "https://github.com/ropensci/cffr",
+ "rel": "/software/repository/github/ropensci/cffr",
+ "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+ "description": "Generate Citation File Format (cff) Metadata for R Packages",
"topics": [
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- "r-packages",
- "fish",
- "salmon",
- "dam-impact-analysis",
- "simulation"
+ "r",
+ "r-package",
+ "attribution",
+ "citation-files",
+ "citation",
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]
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+ "description": "Base package for `outsider`",
+ "topics": [
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- "description": "A Parallel and Distributed SPH Implementation Based on the FleCSI",
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+ "url": "https://github.com/ropensci/rdatacite",
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+ "simulation",
+ "modelica",
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+ "power-electronics",
+ "power-systems",
+ "microgrid",
+ "energy-system-modeling",
+ "power-supply",
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+ "electrical-engineering",
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+ "description": "Gym Electric Motor (GEM): An OpenAI Gym Environment for Electric Motors",
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+ "motor-models",
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- "metagenomics",
- "sequence-assembler",
- "proteins",
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+ "graph-rewriting",
+ "graph-rewriting-library",
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+ "grgen",
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+ "url": "https://github.com/smsharma/mining-for-substructure-lens",
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+ "avatar": "https://avatars.githubusercontent.com/u/6607936?v=4",
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- "blast",
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+ "gravitational-lensing",
+ "machine-learning"
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- "description": "Code for localizing variable star signatures in TESS Photometry",
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+ "avatar": "https://avatars.githubusercontent.com/u/6607936?v=4",
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+ "dark-matter",
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- "description": "A package to help with the (interactive) coding and measurement of occupations",
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+ "avatar": "https://avatars.githubusercontent.com/u/29719189?v=4",
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+ "description": "G-Aligner: a graph-based feature alignment method for untargeted LC-MS-based metabolomics",
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- "description": "A python package that enables simple simulation and Bayesian posterior analysis of nuclear-recoil data from dark matter direct detection experiments for a wide variety of theories of dark matter-nucleon interactions.",
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+ "url": "https://github.com/pyro-kinetics/pyrokinetics",
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+ "avatar": "https://avatars.githubusercontent.com/u/84965465?v=4",
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- "description": "Python implementation of the Loom file format - http://loompy.org",
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+ "avatar": "https://avatars.githubusercontent.com/u/186301548?v=4",
+ "description": "Quantify histological data",
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+ "description": "Code and dependencies for the Linear Algorithm for Significance Reduction, developed by various members of the University of Idaho's Department of Physics.",
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+ "description": "Code for efficient solution of oscillatory ordinary differential equations",
"topics": [
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- "python",
- "monte-carlo"
+ "numerical-methods",
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- "21-cm-cosmology",
- "galaxy-formation",
- "reionization",
- "cosmic-dawn",
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+ "sequence-analysis",
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+ "chromatin-profiles"
]
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+ "description": "Graph neural networks for neutrino telescope event reconstruction",
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- "tensorflow",
+ "astrophysics",
"deep-learning",
+ "gpu",
+ "high-energy-physics",
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+ "neural-network",
+ "particle-physics",
+ "physics-analysis",
+ "python",
+ "pytorch",
+ "neutrino-oscillations",
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+ "neutrinos",
+ "graph-neural-network"
]
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- "swmm5",
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- "stormwater",
- "hydrology-stormwater-analysis",
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- "swmm"
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+ "description": "Software suite to perform solid-body tidal dissipation calculations for rocky and icy worlds",
"topics": [
- "metabolomics",
- "retention-time",
- "lcms"
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+ "tides",
+ "exoplanets",
+ "planetary-science",
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- "description": "fractopo is a Python package with tools for validating and analyzing lineament and fracture trace maps",
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+ "avatar": "https://avatars.githubusercontent.com/u/5678551?v=4",
+ "description": "Python library for fast time-series analysis on CUDA GPUs",
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- "analysis",
- "fracture",
- "geology",
- "topology",
- "geometry",
- "spatial-analysis",
- "fractopo",
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+ "time-series",
+ "nfft",
+ "lomb-scargle-periodogram",
+ "fourier-methods",
+ "cuda",
+ "python",
+ "python-3",
+ "gpu-computing",
+ "gpu"
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- "julia",
- "dark-matter",
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"topics": [
- "cosmology",
- "julia"
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- "description": "PyAutoLens: Open Source Strong Gravitational Lensing",
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"physics",
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"topics": []
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+ "description": "Single-cell disease relevance score (scDRS)",
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- "description": ":deciduous_tree: :dart: Cross Validated Decision Trees with Targeted Maximum Likelihood Estimation",
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+ "description": "A fast constructor of the compressed de Bruijn graph from many genomes",
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- "variable-importance",
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+ "bioinformatics",
+ "graph-algorithms",
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]
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+ "description": "Quantum mechanic mass spectrometry calculation program",
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"topics": [
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- "elliptic-integrals",
- "math",
- "rust",
- "special-functions"
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+ "noise-reduction",
+ "astronomy"
]
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- "circuit",
- "emodel",
- "api",
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+ "python3",
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+ "extraction",
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+ "sequencing"
]
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- "pyroll",
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+ "python3",
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+ "google-cloud",
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+ "metabolic-network",
+ "metabolism",
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+ "bioinformatics",
+ "biochemistry",
+ "computational-biology",
+ "systems-biology",
+ "cell-design",
+ "strain-engineering",
+ "python",
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+ "trefftz-methods",
+ "open-source"
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- "ggplot2",
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+ "cosmology"
]
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+ "description": "QuTiP: Quantum Toolbox in Python",
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- "macro-energy",
- "energy-systems",
- "modeling",
- "timeseries-format",
- "integrated-assessment-scenarios",
- "scenario-data",
- "pyam"
+ "qutip",
+ "python",
+ "quantum-toolbox",
+ "quantum",
+ "quantum-computing",
+ "quantum-mechanics",
+ "quantum-information",
+ "quantum-optics"
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+ "description": "A Python package for interactive mapping with Google Earth Engine, ipyleaflet, and ipywidgets",
+ "topics": [
+ "google-earth-engine",
+ "gis",
+ "remote-sensing",
+ "image-processing",
+ "python",
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+ "ipyleaflet",
+ "mapping",
+ "earth-engine"
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- "description": "Fast, flexible and easy to use probabilistic modelling in Python.",
+ "uid": "github/giswqs/leafmap",
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+ "rel": "/software/repository/github/giswqs/leafmap",
+ "avatar": "https://avatars.githubusercontent.com/u/5016453?v=4",
+ "description": "A Python package for interactive mapping and geospatial analysis with minimal coding in a Jupyter environment",
"topics": [
+ "ipyleaflet",
+ "folium",
+ "mapping",
"python",
- "machine-learning",
- "probabilistic-graphical-models",
- "cython",
- "parallel"
+ "geopython",
+ "jupyter-notebook",
+ "jupyter",
+ "gis",
+ "dataviz",
+ "data-science",
+ "whiteboxtools",
+ "geospatial",
+ "geospatial-analysis"
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+ "avatar": "https://avatars.githubusercontent.com/u/5016453?v=4",
+ "description": "A Python package for delineating nested surface depressions from digital elevation data.",
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- "oct",
- "optics",
- "medical-image-processing",
- "gpu-processing",
- "dsp",
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- "qt",
- "cuda",
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+ "python",
+ "lidar",
+ "digital-elevation-model",
+ "gis",
+ "remote-sensing",
+ "image-processing",
+ "terrain-analysis",
+ "hydrological"
]
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+ "description": "PyORBIT: a code for exoplanet orbital parameters and stellar activity.",
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},
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- "description": "Gravitational waves lensing rate calculator",
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+ "url": "https://github.com/LucaMalavolta/CCFpams",
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+ "avatar": "https://avatars.githubusercontent.com/u/15183346?v=4",
+ "description": "Atmospheric Stellar Parameters from Cross-Correlation Functions for HARPS & HARPS-N",
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- "topics": [
- "cellular-automata",
- "complexity",
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+ "avatar": "https://avatars.githubusercontent.com/u/25361260?v=4",
+ "description": "Structural variant caller for low-depth long-read sequencing data",
+ "topics": []
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+ "url": "https://github.com/UrbanRuralSystems/ur-scape",
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+ "description": "GHEtool is an open-source tool for borefield sizing and ground temperature evolution plotting.",
"topics": [
- "python",
- "planetary-science",
- "ephemerides"
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+ "borefields",
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+ "energy",
+ "storage",
+ "geothermal"
]
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- "description": "dynamics, age and metallicity indicators tracing evolution",
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"topics": []
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+ "avatar": "https://avatars.githubusercontent.com/u/13040606?v=4",
+ "description": "Easy command line tools for Kepler, K2 & TESS data analysis.",
"topics": [
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- "geochemistry",
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+ "tess",
+ "astrophysics"
]
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+ "description": "Mosaic Target Pixel Files (TPFs) obtained by NASA's Kepler/K2 missions into CCD-sized images and movies.",
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- "description": "A Julia package for Cluster Validity Indices (CVIs).",
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+ "avatar": "https://avatars.githubusercontent.com/u/13040606?v=4",
+ "description": "Converts raw cadence target data from the Kepler space telescope into astronomer-friendly FITS files.",
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- "3d",
- "visualization",
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"python",
- "jupyter-notebook",
- "interpolation",
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+ "description": "command lines tool to annotate miRNAs with a standard mirna/isomir naming",
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+ "mirna",
+ "isomirs",
+ "formatter",
+ "gff",
+ "smallrna-seq"
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+ "description": "A Planetary Intensity Code for Atmospheric Spectroscopy Observations",
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+ "direct-imaging",
+ "transmission",
+ "emission",
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+ "graph-analysis",
+ "graph-theory",
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+ "sars-cov-2",
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+ "coronavirus",
+ "covid",
+ "viral-infectious-diseases",
+ "viral",
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+ "microbial-sequences",
+ "meta-genomics",
+ "visualization"
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- "astrophysics",
- "periodogram"
+ "bacteria",
+ "genomics",
+ "population-genetics",
+ "k-mer",
+ "sketching"
]
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"topics": []
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+ "avatar": "https://avatars.githubusercontent.com/u/6331837?v=4",
+ "description": "sequence element (kmer) enrichment analysis",
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- "r",
- "clustering-algorithm",
- "acca",
- "pearson-correlation",
- "correlation-matrix",
- "correlation-calculations",
- "uncertainty-coefficient"
+ "gwas",
+ "bacteria",
+ "k-mer"
]
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- "description": "Fisher Formalism for Weak Lensing using 1 or 2 Galsim galaxies.",
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+ "description": "Software tool for the compilation of Heta-based QSP modeling platform",
"topics": [
- "galsim",
- "fisher-formalism",
- "cosmology"
+ "pharmacokinetics",
+ "pharmacometrics",
+ "pharmacodynamics",
+ "systems-pharmacology",
+ "systems-biology"
]
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+ "description": "Radio Synthesis Deconvolution using L1 Minimisation",
"topics": []
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- "description": "An algorithm to identify cross-linked peptides",
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+ "description": "Spatial data processing for geomodeling",
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+ "spatial-data",
+ "processing",
+ "geographic",
+ "geographic-data",
+ "vector-data",
+ "raster-data",
+ "geomodeling",
+ "modeling",
+ "visualization",
+ "python",
+ "jupyter",
+ "jupyter-notebook",
+ "notebooks",
+ "geospatial"
+ ]
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+ "avatar": "https://avatars.githubusercontent.com/u/49724060?v=4",
+ "description": "Scalable and Efficient Variant Calling on Apache Spark cluster",
+ "topics": [
+ "gcp-dataproc-cluster",
+ "bwa",
+ "duplicates-removal",
+ "variant-calling",
+ "deepvariant",
+ "minimap2"
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- "description": "A Python framework for structural bioinformatics.",
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+ "rel": "/software/repository/github/joshspeagle/dynesty",
+ "avatar": "https://avatars.githubusercontent.com/u/13280133?v=4",
+ "description": "Dynamic Nested Sampling package for computing Bayesian posteriors and evidences",
"topics": [
- "bioinformatics",
- "algorithms",
- "structural-bioinformatics",
- "library"
+ "nested-sampling",
+ "pure-python",
+ "mit-license",
+ "bayesian-inference",
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]
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- "description": "Software to build Halo Merger Trees/compare halo catalogs",
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+ "avatar": "https://avatars.githubusercontent.com/u/63514976?v=4",
+ "description": "Open source code for the numerical model IsoFATE: Isotopic Fractionation via ATmospheric Escape",
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- "description": "Galaxy/(sub)Halo finder for N-body simulations",
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"topics": []
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- "avatar": "https://avatars.githubusercontent.com/u/6503785?v=4",
- "description": "An oil land-spill and overland flow simulator for pipeline rupture events",
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+ "rel": "/software/repository/github/neuroanatomy/thresholdmann",
+ "avatar": "https://avatars.githubusercontent.com/u/11254134?v=4",
+ "description": "A tool to apply a smoothly varying threshold to a nifti image",
"topics": [
- "geoclaw",
- "overland-flow",
- "pipeline",
- "shallow-water-equations",
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+ "hacktoberfest"
]
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+ "avatar": "https://avatars1.githubusercontent.com/u/11254134?v=4",
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"topics": [
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+ "description": "DarpanX is a Python 3 package that provides functionality to compute reflectivity and other specular optical functions of a multilayer or single layer mirror for different energy and angles as well as to fit the XRR measurements of the mirrors.",
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- "description": "FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries",
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+ "url": "https://github.com/aineniamh/squirrel",
+ "rel": "/software/repository/github/aineniamh/squirrel",
+ "avatar": "https://avatars.githubusercontent.com/u/11678307?v=4",
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},
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- "description": "Core C++ library for data structures, algorithms, and utilities",
+ "uid": "github/HUPO-PSI/mzspeclib-py",
+ "url": "https://github.com/HUPO-PSI/mzspeclib-py",
+ "rel": "/software/repository/github/HUPO-PSI/mzspeclib-py",
+ "avatar": "https://avatars.githubusercontent.com/u/11966779?v=4",
+ "description": "A python reference implementation of the mzSpecLib spectral library format",
"topics": []
},
{
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- "url": "https://github.com/PacificBiosciences/HiPhase",
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- "avatar": "https://avatars.githubusercontent.com/u/999745?v=4",
- "description": "Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads",
+ "uid": "github/hamidnpc/Neloura",
+ "url": "https://github.com/hamidnpc/Neloura",
+ "rel": "/software/repository/github/hamidnpc/Neloura",
+ "avatar": "https://avatars.githubusercontent.com/u/3179916?v=4",
+ "description": "FITS File Visualization, Cataloging, and Interaction Tool",
"topics": [
- "hifi",
- "phasing",
- "structural-variants",
- "variants",
- "pacbio-data",
- "short-tandem-repeats"
+ "astronomy"
]
},
{
- "uid": "github/PacificBiosciences/IsoSeq",
- "url": "https://github.com/PacificBiosciences/IsoSeq",
- "rel": "/software/repository/github/PacificBiosciences/IsoSeq",
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- "description": "IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads",
- "topics": [
- "pacbio",
- "rna",
- "clustering",
- "polishing",
- "isoforms",
- "discovery"
- ]
+ "uid": "github/AI4SCR/ai4bmr-datasets",
+ "url": "https://github.com/AI4SCR/ai4bmr-datasets",
+ "rel": "/software/repository/github/AI4SCR/ai4bmr-datasets",
+ "avatar": "https://avatars.githubusercontent.com/u/100225689?v=4",
+ "description": null,
+ "topics": []
},
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- "avatar": "https://avatars.githubusercontent.com/u/999745?v=4",
- "description": "Minor Variant Calling and Phasing Tools",
+ "uid": "github/HadrienG/InSilicoSeq",
+ "url": "https://github.com/HadrienG/InSilicoSeq",
+ "rel": "/software/repository/github/HadrienG/InSilicoSeq",
+ "avatar": "https://avatars.githubusercontent.com/u/7337110?v=4",
+ "description": ":rocket: A sequencing simulator",
"topics": [
- "minor-variant",
- "haplotypes",
- "phasing",
- "drug-resistance",
- "statistics",
- "next-generation-sequencing",
- "long-read",
- "pacbio"
+ "bioinformatics",
+ "illumina-sequencing",
+ "sequencing",
+ "simulation",
+ "metagenomics"
]
},
{
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- "description": "A Python library for reading and writing PacBio\u00ae data files",
- "topics": []
- },
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- "url": "https://github.com/PacificBiosciences/pbbioconda",
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- "avatar": "https://avatars.githubusercontent.com/u/999745?v=4",
- "description": "PacBio Secondary Analysis Tools on Bioconda",
+ "uid": "github/christopherlovell/sengi",
+ "url": "https://github.com/christopherlovell/sengi",
+ "rel": "/software/repository/github/christopherlovell/sengi",
+ "avatar": "https://avatars.githubusercontent.com/u/4648092?v=4",
+ "description": "A small, fast, interactive viewer for SPS spectral outputs",
"topics": []
},
{
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- "url": "https://github.com/bwa-mem2/bwa-mem2",
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- "avatar": "https://avatars.githubusercontent.com/u/43346774?v=4",
- "description": "The next version of bwa-mem ",
+ "uid": "github/MrOlm/drep",
+ "url": "https://github.com/MrOlm/drep",
+ "rel": "/software/repository/github/MrOlm/drep",
+ "avatar": "https://avatars.githubusercontent.com/u/13424205?v=4",
+ "description": "a python program for rapidly comparing large numbers of genomes, dRep can also \"de-replicate\" a genome set by identifying groups of highly similar genomes and choosing the best representative genome for each genome set.",
"topics": [
"bioinformatics",
- "genomics",
- "sequence-alignment"
+ "metagenomics",
+ "microbiology",
+ "assembly",
+ "microbial-genomes"
]
},
{
- "uid": "github/mgalardini/pyseer",
- "url": "https://github.com/mgalardini/pyseer",
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- "topics": [
- "gwas",
- "bacteria",
- "k-mer",
- "reimplementation",
- "reproducible-science"
- ]
+ "uid": "github/ConorMacBride/mcalf",
+ "url": "https://github.com/ConorMacBride/mcalf",
+ "rel": "/software/repository/github/ConorMacBride/mcalf",
+ "avatar": "https://avatars.githubusercontent.com/u/25007832?v=4",
+ "description": "MCALF: Multi-Component Atmospheric Line Fitting",
+ "topics": []
},
{
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- "url": "https://github.com/watts-dev/watts",
- "rel": "/software/repository/github/watts-dev/watts",
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- "description": "Workflow and Template Toolkit for Simulation (WATTS)",
- "topics": [
- "python",
- "simulation",
- "templates",
- "nuclear-energy"
- ]
+ "uid": "github/GaryBAYLOR/mixR",
+ "url": "https://github.com/GaryBAYLOR/mixR",
+ "rel": "/software/repository/github/GaryBAYLOR/mixR",
+ "avatar": "https://avatars.githubusercontent.com/u/12647683?v=4",
+ "description": "R package for fitting finite mixture models for both raw and binned data",
+ "topics": []
},
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- "url": "https://github.com/quatrope/feets",
- "rel": "/software/repository/github/quatrope/feets",
- "avatar": "https://avatars.githubusercontent.com/u/53583309?v=4",
- "description": "feATURE eXTRACTOR FOR tIME sERIES",
+ "uid": "github/Rocsg/FijiRelax",
+ "url": "https://github.com/Rocsg/FijiRelax",
+ "rel": "/software/repository/github/Rocsg/FijiRelax",
+ "avatar": "https://avatars.githubusercontent.com/u/24812704?v=4",
+ "description": "FijiRelax: 3D+t multi-echo spin-echo sequences MRI analysis",
"topics": [
- "machine-learning",
- "feature-extraction",
- "timeseries",
- "astronomy",
- "python2",
- "python3",
- "scipy",
- "astropy"
+ "image-processing",
+ "imagej",
+ "imagej-plugins",
+ "java",
+ "modeling",
+ "mri",
+ "relaxation-time"
]
},
{
- "uid": "github/quatrope/ProperImage",
- "url": "https://github.com/quatrope/ProperImage",
- "rel": "/software/repository/github/quatrope/ProperImage",
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- "description": "Proper Image utils for astronomy. ",
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- "data-analysis-python",
- "image-processing",
- "coaad-images",
- "psf-estimation",
- "astronomy",
- "zogy",
- "image-difference",
- "python",
- "dia",
- "image-subtraction"
- ]
+ "uid": "github/vdemichev/DiaNN",
+ "url": "https://github.com/vdemichev/DiaNN",
+ "rel": "/software/repository/github/vdemichev/DiaNN",
+ "avatar": "https://avatars.githubusercontent.com/u/30595084?v=4",
+ "description": "DIA-NN - a universal automated software suite for DIA proteomics data analysis. ",
+ "topics": []
},
{
- "uid": "github/NASA-PDS/naif-pds4-bundler",
- "url": "https://github.com/NASA-PDS/naif-pds4-bundler",
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- "avatar": "https://avatars.githubusercontent.com/u/46757714?v=4",
- "description": "Package to generate PDS4 SPICE Kernels Archives",
+ "uid": "github/joefarrington/mdpax",
+ "url": "https://github.com/joefarrington/mdpax",
+ "rel": "/software/repository/github/joefarrington/mdpax",
+ "avatar": "https://avatars.githubusercontent.com/u/22770922?v=4",
+ "description": "GPU-accelerated MDP solvers in Python with JAX",
"topics": [
- "python",
- "planetary-science",
- "planetary-data",
- "data",
- "archive",
- "spice",
- "geometry",
- "geometry-processing",
- "navigation"
+ "dynamic-programming",
+ "jax",
+ "optimization",
+ "reinforcement-learning",
+ "value-iteration"
]
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- "url": "https://github.com/KostasValeckas/PyLongslit",
- "rel": "/software/repository/github/KostasValeckas/PyLongslit",
- "avatar": "https://avatars.githubusercontent.com/u/117293401?v=4",
+ "uid": "github/dtcc-platform/dtcc-builder",
+ "url": "https://github.com/dtcc-platform/dtcc-builder",
+ "rel": "/software/repository/github/dtcc-platform/dtcc-builder",
+ "avatar": "https://avatars.githubusercontent.com/u/125552939?v=4",
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"topics": []
},
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- "avatar": "https://avatars.githubusercontent.com/u/2254492?v=4",
- "description": "The TaskGraph Meta-programming Library is a C++ package that supports run-time code generation - programs that generate code on the fly, then execute it. And having built a piece of code, you can apply various transformations to it (such as loop interchange and tiling).",
+ "uid": "github/MAnalytics/akmedoids",
+ "url": "https://github.com/MAnalytics/akmedoids",
+ "rel": "/software/repository/github/MAnalytics/akmedoids",
+ "avatar": "https://avatars1.githubusercontent.com/u/27354347?v=4",
+ "description": "akmedoids for longitudinal clustering",
"topics": []
},
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- "url": "https://github.com/nkhorshid/SimAb",
- "rel": "/software/repository/github/nkhorshid/simab",
- "avatar": "https://avatars.githubusercontent.com/u/43376977?v=4",
- "description": "Planet formation model",
+ "uid": "github/MAnalytics/opitools",
+ "url": "https://github.com/MAnalytics/opitools",
+ "rel": "/software/repository/github/MAnalytics/opitools",
+ "avatar": "https://avatars.githubusercontent.com/u/27354347?v=4",
+ "description": "An R-package for opinion analysis of social media data",
"topics": []
},
{
- "uid": "github/Mat-dp/mat-dp-core",
- "url": "https://github.com/Mat-dp/mat-dp-core",
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- "topics": [
- "modelling-tool",
- "bulk-materials",
- "critical-materials",
- "embodied-emissions",
- "low-carbon-systems",
- "material-demand"
- ]
- },
- {
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- "url": "https://github.com/cbg-ethz/LolliPop",
- "rel": "/software/repository/github/cbg-ethz/LolliPop",
- "avatar": "https://avatars.githubusercontent.com/u/12068026?v=4",
- "description": "Deconvolution for Wastewater Genomics",
+ "uid": "github/tkchafin/autostreamtree",
+ "url": "https://github.com/tkchafin/autostreamtree",
+ "rel": "/software/repository/github/tkchafin/autostreamtree",
+ "avatar": "https://avatars.githubusercontent.com/u/10889979?v=4",
+ "description": "Stream trees for SNP datasets",
"topics": []
},
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- "uid": "github/cbg-ethz/smallgenomeutilities",
- "url": "https://github.com/cbg-ethz/smallgenomeutilities",
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- "avatar": "https://avatars.githubusercontent.com/u/12068026?v=4",
- "description": "smallgenomeutilities is a collection of Python scripts to convert alignments between different reference genomes.",
- "topics": []
+ "uid": "github/martibosch/detectree",
+ "url": "https://github.com/martibosch/detectree",
+ "rel": "/software/repository/github/martibosch/detectree",
+ "avatar": "https://avatars0.githubusercontent.com/u/5831581?v=4",
+ "description": "Tree detection from aerial imagery in Python",
+ "topics": [
+ "tree-detection",
+ "tree-pixels",
+ "tree-canopy",
+ "remote-sensing",
+ "python",
+ "image-segmentation"
+ ]
},
{
- "uid": "github/cbg-ethz/shorah",
- "url": "https://github.com/cbg-ethz/shorah",
- "rel": "/software/repository/github/cbg-ethz/shorah",
- "avatar": "https://avatars.githubusercontent.com/u/12068026?v=4",
- "description": "Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes)",
+ "uid": "github/NeuralEnsemble/PyNN",
+ "url": "https://github.com/NeuralEnsemble/PyNN",
+ "rel": "/software/repository/github/NeuralEnsemble/PyNN",
+ "avatar": "https://avatars.githubusercontent.com/u/1540309?v=4",
+ "description": "A Python package for simulator-independent specification of neuronal network models.",
"topics": []
},
{
- "uid": "github/cbg-ethz/V-pipe",
- "url": "https://github.com/cbg-ethz/V-pipe",
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- "description": "V-pipe is a pipeline designed for analysing NGS data of short viral genomes",
- "topics": []
+ "uid": "github/NeuralEnsemble/elephant",
+ "url": "https://github.com/NeuralEnsemble/elephant",
+ "rel": "/software/repository/github/NeuralEnsemble/elephant",
+ "avatar": "https://avatars3.githubusercontent.com/u/1540309?v=4",
+ "description": "Elephant is the Electrophysiology Analysis Toolkit",
+ "topics": [
+ "python",
+ "data-analysis",
+ "electrophysiology",
+ "neurophysiology",
+ "neuroscience",
+ "statistics",
+ "hacktoberfest"
+ ]
},
{
- "uid": "github/cbg-ethz/PredictHaplo",
- "url": "https://github.com/cbg-ethz/PredictHaplo",
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- "avatar": "https://avatars2.githubusercontent.com/u/12068026?v=4",
- "description": "This software aims at reconstructing haplotypes from next-generation sequencing data.",
- "topics": []
+ "uid": "github/paulsengroup/hictkpy",
+ "url": "https://github.com/paulsengroup/hictkpy",
+ "rel": "/software/repository/github/paulsengroup/hictkpy",
+ "avatar": "https://avatars.githubusercontent.com/u/100847901?v=4",
+ "description": "Python bindings for hictk: read and write .cool and .hic files directly from Python",
+ "topics": [
+ "bindings",
+ "bioinformatics",
+ "cooler",
+ "hic",
+ "hictk",
+ "python3"
+ ]
},
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- "url": "https://github.com/martinjzhang/scDRS",
- "rel": "/software/repository/github/martinjzhang/scDRS",
- "avatar": "https://avatars.githubusercontent.com/u/27316293?v=4",
- "description": "Single-cell disease relevance score (scDRS)",
+ "uid": "github/paulsengroup/hictkR",
+ "url": "https://github.com/paulsengroup/hictkR",
+ "rel": "/software/repository/github/paulsengroup/hictkR",
+ "avatar": "https://avatars.githubusercontent.com/u/100847901?v=4",
+ "description": "R bindings for hictk: read .cool and .hic files directly from R",
"topics": [
- "cell-state",
- "gwas",
- "single-cell-rna-seq",
- "diseases-and-complex-traits",
- "within-cell-type-heterogeneity"
+ "bindings",
+ "bioinformatics",
+ "cooler",
+ "hic",
+ "hictk",
+ "r",
+ "hi-c"
]
},
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- "rel": "/software/repository/github/lu-yizhou/ClusterSeg",
- "avatar": "https://avatars.githubusercontent.com/u/51467771?v=4",
- "description": null,
+ "uid": "github/paulsengroup/StripePy",
+ "url": "https://github.com/paulsengroup/StripePy",
+ "rel": "/software/repository/github/paulsengroup/StripePy",
+ "avatar": "https://avatars.githubusercontent.com/u/100847901?v=4",
+ "description": "StripePy recognizes architectural stripes in 3C and Hi-C contact maps using geometric reasoning",
"topics": []
},
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- "uid": "github/fbreitwieser/krakenuniq",
- "url": "https://github.com/fbreitwieser/krakenuniq",
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- "avatar": "https://avatars.githubusercontent.com/u/516060?v=4",
- "description": "\ud83d\udc19 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results",
+ "uid": "github/paulsengroup/hictk",
+ "url": "https://github.com/paulsengroup/hictk",
+ "rel": "/software/repository/github/paulsengroup/hictk",
+ "avatar": "https://avatars.githubusercontent.com/u/100847901?v=4",
+ "description": "Blazing fast toolkit to work with .hic and .cool files",
"topics": [
"bioinformatics",
- "metagenomics"
+ "cli-application",
+ "conversion",
+ "cooler",
+ "cxx",
+ "cxx-library",
+ "cxx17",
+ "hic",
+ "hictk"
]
},
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- "url": "https://github.com/iobio-zjut/IPTDFold",
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- "description": "A de novo protein structure prediction by iterative partition sampling, topology adjustment, and residue-level distance deviation optimization",
- "topics": []
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- "avatar": "https://avatars.githubusercontent.com/u/1431820?v=4",
- "description": "iSEDfit is a Bayesian spectral energy distribution fitting code designed to extract the physical properties of galaxies from broadband photometry.",
+ "uid": "github/cullanhowlett/l-picola",
+ "url": "https://github.com/CullanHowlett/l-picola",
+ "rel": "/software/repository/github/cullanhowlett/l-picola",
+ "avatar": "https://avatars.githubusercontent.com/u/5528370?v=4",
+ "description": "A public repository for the code L-PICOLA",
"topics": []
},
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- "url": "https://github.com/dspelaez/extended-wdm",
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- "avatar": "https://avatars.githubusercontent.com/u/6423179?v=4",
- "description": "Python toolkit for estimating directional wave spectra of ocean waves based on wavelet transform",
+ "uid": "github/MNiwano/Eclaire",
+ "url": "https://github.com/MNiwano/Eclaire",
+ "rel": "/software/repository/github/MNiwano/Eclaire",
+ "avatar": "https://avatars.githubusercontent.com/u/50729838?v=4",
+ "description": "Python package using GPU via CUDA for astronomical image reduction",
"topics": [
- "spotter",
- "wavelets",
- "waves",
- "wdm",
- "adcps",
- "directional-spectrum",
- "wavestaffs"
+ "python"
]
},
{
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- "rel": "/software/repository/github/CaNS-World/CaNS-Fizzy",
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- "fortran",
- "gpu",
- "high-performance-computing",
- "multiphase-flow",
- "turbulence",
- "computational-fluid-dynamics",
- "fluid-dynamics",
- "fluid-simulation"
- ]
+ "uid": "github/vimc/orderly",
+ "url": "https://github.com/vimc/orderly",
+ "rel": "/software/repository/github/vimc/orderly",
+ "avatar": "https://avatars.githubusercontent.com/u/26278316?v=4",
+ "description": ":hospital::ambulance: Lightweight Reproducible Reporting for R",
+ "topics": []
},
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- "numerical-integration",
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- "simulation",
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+ "julia",
+ "high-oscillatory",
+ "fft",
+ "ode-solver",
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- "genomics",
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- "annotation-tool",
- "benchmark-scripts",
- "sequencing-data",
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+ "architecture",
+ "multi-objective",
+ "optimization",
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+ "system"
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- "exoplanet-atmospheres",
- "exoplanets",
- "jwst",
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+ "dicom",
"python",
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+ "medical-imaging"
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- "jwst",
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- "spectroscopy",
- "tedorf"
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+ "topics": []
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+ "avatar": "https://avatars.githubusercontent.com/u/47176497?v=4",
+ "description": "Framework for Information Theoretical analysis of Electrophysiological data and Statistics",
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- "algorithms",
- "game-theory",
- "mean-field-games",
- "stochastic-games"
+ "information-theory",
+ "electrophysiological-data",
+ "statistics",
+ "group-level",
+ "rfx",
+ "ffx",
+ "gaussian-copula",
+ "cluster-based",
+ "neurophysiological-data",
+ "functional-connectivity",
+ "brainweb"
]
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- "owl",
- "rdf",
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- "fiware-orion",
- "fiware-iot-agents",
- "fiware-ngsi-v2",
- "python",
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- "fiware-quantum-leap"
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+ "description": "Enlsip.jl is the Julia version of a Fortran77 optimization library designed to solve nonlinear least squares problems under general nonlinear constraints.",
+ "topics": []
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+ "description": "Code to estimate the power spectrum of redshifted 21-cm emission from interferometric observations, within a Bayesian forward modelling framework.",
"topics": []
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+ "rel": "/software/repository/github/perfanalytics/pose2sim",
+ "avatar": "https://avatars.githubusercontent.com/u/106652625?v=4",
+ "description": "Markerless kinematics, from OpenPose to OpenSim",
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- "dwd",
- "epw",
- "tmy3",
- "try",
- "weather",
- "weatherdata",
- "weatherdatacollection",
- "converter"
+ "kinematics",
+ "markerless",
+ "openpose",
+ "opensim",
+ "3d-kinematics",
+ "biomechanics",
+ "motion-capture",
+ "pose-estimation",
+ "sports"
]
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+ "description": "SolarZip\uff1aAn efficient and adaptive compression framework for Sloar EUV data",
+ "topics": []
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- "description": "Legolas: a modern tool for MHD spectroscopy",
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+ "avatar": "https://avatars.githubusercontent.com/u/1536647?v=4",
+ "description": "Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.",
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- "magnetohydrodynamics",
- "finite-elements",
- "astrophysics",
- "spectroscopy"
+ "sequence-alignment",
+ "edit-distance",
+ "levehnstein-distance",
+ "library",
+ "c-plus-plus",
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+ "python",
+ "bioinformatics"
]
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- "description": "TRiple Evolution Simulation package",
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- "astrophysics",
- "astronomy",
- "simulations",
- "python"
- ]
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+ "description": "The Causal Rule Ensemble Method",
+ "topics": []
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- "description": "A python package for identification of mean-motion resonances in the Solar system and other planetary systems.",
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+ "avatar": "https://avatars.githubusercontent.com/u/42929618?v=4",
+ "description": "MitoHEAR (Mitochondrial HEteroplasmy AnalyzeR) is an R package that allows the estimation as well as downstream statistical analysis of the mtDNA heteroplasmy calculated from single-cell datasets.",
"topics": [
- "astronomy",
- "mean-motion-resonance",
- "solar-system-simulation"
+ "bioinformatics-analysis",
+ "heteroplasmy",
+ "open-source",
+ "rstats-package"
]
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- "description": "MCALF: Multi-Component Atmospheric Line Fitting",
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+ "rel": "/software/repository/github/smandal97/Sprout",
+ "avatar": "https://avatars.githubusercontent.com/u/63262399?v=4",
+ "description": "Sprout is a finite volume hydro code based on the moving mesh approach. It uses a simple expanding Cartesian grid to track outflows for several orders of magnitudes in expansion.",
"topics": []
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- "distributed-computing",
- "multi-agent-systems",
- "agent-based",
- "agent-based-simulation",
- "agent-based-control"
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+ "uid": "github/oruhnau/when2heat",
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+ "rel": "/software/repository/github/oruhnau/when2heat",
+ "avatar": "https://avatars2.githubusercontent.com/u/40352101?v=4",
+ "description": "Heating Profiles",
+ "topics": []
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- "description": "THESIAS: Testing Haplotype Effects In Association Studies",
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+ "avatar": "https://avatars.githubusercontent.com/u/61846320?v=4",
+ "description": "An object-oriented general relativity package for Mathematica.",
"topics": [
- "bioinformatics",
- "genomics",
- "haplotype",
- "association-studies",
- "association-analysis",
- "java-interface"
+ "tensor",
+ "tensors",
+ "general-relativity",
+ "differential-geometry",
+ "scientific-computing"
]
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- "description": "Process AWS data from L0 (raw logger) through Lx (end user)",
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+ "url": "https://github.com/pmeier/pystiche",
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+ "avatar": "https://avatars0.githubusercontent.com/u/6849766?v=4",
+ "description": "Framework for Neural Style Transfer (NST) built upon PyTorch",
"topics": [
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- "weather",
- "weather-station"
+ "python",
+ "neural-style-transfer",
+ "framework",
+ "pytorch"
]
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- "remote-sensing",
- "glacial-lakes",
- "satellite-imagery",
- "glofs",
- "ice-marginal-lakes",
- "cryosphere"
- ]
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+ "description": "Radial velocities for low-resolution NIR spectra using telluric features to provide absolute wavelength calibration",
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- "description": "Next generation FEniCS Form Compiler",
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+ "rel": "/software/repository/github/jacob-long/jtools",
+ "avatar": "https://avatars.githubusercontent.com/u/4957401?v=4",
+ "description": "Tools for summarizing/visualizing regressions and other helpful stuff",
"topics": [
- "partial-differential-equations",
- "finite-element-methods",
- "variational-method",
- "code-generation",
- "fenics"
+ "r",
+ "social-sciences",
+ "r-package"
]
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- "description": "FEniCS finite element basis evaluation library",
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+ "description": "km : a software for RNA-seq investigation using k-mer decomposition",
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- "geospatial",
- "network-analysis",
- "urban-mobility",
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- "gis",
- "osmnx",
- "transportation-network"
+ "length-measurement",
+ "altitude-calibration",
+ "body-volume",
+ "whales",
+ "photogrammetry",
+ "gui-application",
+ "pyqt5"
]
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- "fluid-dynamics",
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- "fusion",
- "plasma-physics",
- "simulations"
+ "python",
+ "particle-tracking",
+ "fluid-mechanics",
+ "experiments",
+ "measurements",
+ "photogrammetry",
+ "turbulence",
+ "3d-ptv"
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+ "url": "https://github.com/manodeep/Corrfunc",
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+ "description": "\u26a1\ufe0f\u26a1\ufe0f\u26a1\ufe0fBlazing fast correlation functions on the CPU.",
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+ "galaxies",
+ "cosmology",
+ "large-scale-structure",
+ "pair-counting",
+ "intrinsics",
+ "python",
+ "c",
+ "openmp",
+ "simd",
+ "avx512",
+ "avx2",
+ "avx",
+ "sse42",
+ "correlation-functions"
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- "description": "An R package for conducting sensitivity analyses for unmeasured confounders",
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+ "url": "https://github.com/pysam-developers/pysam",
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+ "avatar": "https://avatars.githubusercontent.com/u/6598771?v=4",
+ "description": "Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.",
"topics": []
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- "description": "Real-time analysis of intracranial neurophysiology recordings.",
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+ "url": "https://github.com/vaexio/vaex",
+ "rel": "/software/repository/github/vaexio/vaex",
+ "avatar": "https://avatars.githubusercontent.com/u/45720408?v=4",
+ "description": "Out-of-Core hybrid Apache Arrow/NumPy DataFrame for Python, ML, visualization and exploration of big tabular data at a billion rows per second \ud83d\ude80",
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+ "dataframe",
"python",
- "deep-brain-stimulation",
- "electrocorticography",
- "ecog",
- "dbs",
+ "bigdata",
+ "tabular-data",
+ "visualization",
+ "memory-mapped-file",
+ "hdf5",
"machine-learning",
- "real-time"
+ "machinelearning"
+ ]
+ },
+ {
+ "uid": "github/ywx649999311/EzTao",
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+ "avatar": "https://avatars.githubusercontent.com/u/11515291?v=4",
+ "description": "A Python Toolkit for AGN Time Series Analysis using CARMA models",
+ "topics": [
+ "carma",
+ "drw",
+ "agn",
+ "astronomy",
+ "time-series",
+ "gaussian-processes"
]
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{
- "uid": "github/denglab/SeqSero",
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- "avatar": "https://avatars.githubusercontent.com/u/10891728?v=4",
- "description": "Salmonella serotyping from genome sequencing data",
- "topics": []
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+ "url": "https://github.com/ywx649999311/vizic",
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+ "avatar": "https://avatars.githubusercontent.com/u/11515291?v=4",
+ "description": "A Jupyter-based Interactive Visualization Tool for Astronomical Catalogs",
+ "topics": [
+ "jupyter-notebook",
+ "astronomical-catalogs"
+ ]
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- "url": "https://github.com/indrops/indrops",
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- "avatar": "https://avatars.githubusercontent.com/u/21204688?v=4",
- "description": "Pipeline for processing inDrops sequencing data",
- "topics": []
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+ "url": "https://github.com/bbuchfink/diamond",
+ "rel": "/software/repository/github/bbuchfink/diamond",
+ "avatar": "https://avatars.githubusercontent.com/u/10001338?v=4",
+ "description": "Accelerated BLAST compatible local sequence aligner.",
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+ "sequence-alignment"
+ ]
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- "description": "Accelerated Oblique Random Survival Forests",
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+ "rel": "/software/repository/github/nonlocalmodels/NLMech",
+ "avatar": "https://avatars.githubusercontent.com/u/52047777?v=4",
+ "description": "Implementation of finite element and finite difference approximation of Nonlocal models",
"topics": [
- "rstats",
- "data-science",
- "oblique",
- "random-forest",
- "survival"
+ "computational-mechanics",
+ "peridynamics",
+ "fracture",
+ "nonlocalmodels"
]
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- "uid": "github/VMBoehm/MADLens",
- "url": "https://github.com/VMBoehm/MADLens",
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- "avatar": "https://avatars.githubusercontent.com/u/22053912?v=4",
- "description": "a differentiable lensing simulator",
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+ "rel": "/software/repository/github/infer-actively/pymdp",
+ "avatar": "https://avatars.githubusercontent.com/u/75545318?v=4",
+ "description": "A Python implementation of active inference for Markov Decision Processes",
"topics": []
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- "url": "https://github.com/yungkipreos/Min-CaLM",
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- "topics": []
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+ "url": "https://github.com/Shamrock-code/Shamrock",
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+ "avatar": "https://avatars.githubusercontent.com/u/120786926?v=4",
+ "description": "The Shamrock Framework, an open-source, multi-GPU hydrodynamics framework for astrophysics. Scales seamlessly from laptops to exascale supercomputers, supporting SPH, AMR, and more.",
+ "topics": [
+ "amr",
+ "astrophysics",
+ "mpi",
+ "multi-gpu",
+ "sph",
+ "sycl",
+ "adaptivecpp",
+ "oneapi",
+ "phantom",
+ "ramses",
+ "zeus",
+ "fluid-simulation-engine",
+ "fluid-dynamics",
+ "exascale"
+ ]
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- "avatar": "https://avatars.githubusercontent.com/u/1633361?v=4",
- "description": "A minimalistic framework for Numerical Association Rule Mining",
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+ "rel": "/software/repository/github/RaRe-Technologies/gensim",
+ "avatar": "https://avatars3.githubusercontent.com/u/12515886?v=4",
+ "description": "Topic Modelling for Humans",
"topics": [
+ "gensim",
+ "topic-modeling",
+ "information-retrieval",
+ "machine-learning",
+ "natural-language-processing",
+ "nlp",
"data-science",
+ "python",
"data-mining",
- "association-rules",
- "association-rule-mining",
- "evolutionary-algorithms",
- "swarm-intelligence"
+ "word2vec",
+ "word-embeddings",
+ "neural-network",
+ "document-similarity",
+ "word-similarity",
+ "fasttext"
]
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- "uid": "github/firefly-cpp/NiaARM.jl",
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- "avatar": "https://avatars.githubusercontent.com/u/1633361?v=4",
- "description": "Numerical Association Rule Mining in Julia",
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+ "url": "https://github.com/sibirrer/hierArc",
+ "rel": "/software/repository/github/sibirrer/hierArc",
+ "avatar": "https://avatars.githubusercontent.com/u/6814174?v=4",
+ "description": "Hierarchical inference of cosmological parameters from a set of strong lensing systems",
"topics": [
- "association-rule-mining",
- "data-mining",
- "data-science",
- "evolutionary-algorithms",
- "machine-learning"
+ "lenstronomy",
+ "cosmology"
]
},
{
- "uid": "github/IndrajeetPatil/ggstatsplot",
- "url": "https://github.com/IndrajeetPatil/ggstatsplot",
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- "description": "Enhancing `ggplot2` plots with statistical analysis \ud83d\udcca\ud83c\udfa8\ud83d\udce3",
+ "uid": "github/sibirrer/lenstronomy",
+ "url": "https://github.com/sibirrer/lenstronomy",
+ "rel": "/software/repository/github/sibirrer/lenstronomy",
+ "avatar": "https://avatars.githubusercontent.com/u/6814174?v=4",
+ "description": "multi-purpose lens modeling software package",
"topics": [
- "ggplot-extension",
- "statistical-tests",
- "dataviz",
- "r",
- "statistical-analysis",
- "visualization",
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- "tidy-data",
- "effect-size",
- "mixed-models",
- "robust-statistics",
- "non-parametric-statistics",
- "parametric",
- "meta-analysis"
+ "gravitational-lensing",
+ "image-simulation",
+ "lenstronomy",
+ "astropy-affiliated",
+ "cosmology",
+ "astronomy",
+ "galaxies",
+ "galaxy-morphology",
+ "strong-lensing",
+ "astrophysics"
]
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- "description": "Expressions and dataframes with statistical details \ud83d\udcc9 \ud83d\udcdc\ud83d\udd23\u2705",
+ "uid": "github/sibirrer/psfr",
+ "url": "https://github.com/sibirrer/psfr",
+ "rel": "/software/repository/github/sibirrer/psfr",
+ "avatar": "https://avatars.githubusercontent.com/u/6814174?v=4",
+ "description": "Point Spread Function reconstruction",
"topics": [
- "statistical-tests",
- "statistical-details",
- "meta-analysis",
- "contingency-table",
- "robust",
- "correlation",
- "parametric",
- "bayesian-inference",
- "bayesian-statistics",
- "robust-statistics",
- "effectsize",
- "tidy"
+ "astronomy",
+ "psf-estimation",
+ "lenstronomy"
]
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- "url": "https://github.com/devanshkv/fetch",
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- "description": "A set of deep learning models for FRB/RFI binary classification. ",
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+ "url": "https://github.com/niess/calzone",
+ "rel": "/software/repository/github/niess/calzone",
+ "avatar": "https://avatars.githubusercontent.com/u/11327514?v=4",
+ "description": "A Geant4 Python wrapper for the simulation of outdoor particle detectors",
"topics": [
- "fast-radio-bursts",
- "deep-learning",
- "transfer-learning",
- "binary-classification"
+ "geant4",
+ "monte-carlo",
+ "python"
]
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- "description": "DarsakX is a Python package that can be used to design and analyze the imaging performance of a multi-shell X-ray telescope with an optical configuration similar to Wolter-1 optics for astronomical purposes. ",
+ "uid": "github/smoh/kinesis",
+ "url": "https://github.com/smoh/kinesis",
+ "rel": "/software/repository/github/smoh/kinesis",
+ "avatar": "https://avatars.githubusercontent.com/u/1384435?v=4",
+ "description": "kinematic modelling of clusters with gaia",
"topics": []
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- "url": "https://github.com/Quantum-Dynamics-Hub/libra-code",
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- "avatar": "https://avatars.githubusercontent.com/u/27871906?v=4",
- "description": null,
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+ "url": "https://github.com/arpan-52/Finalflash",
+ "rel": "/software/repository/github/arpan-52/Finalflash",
+ "avatar": "https://avatars.githubusercontent.com/u/110227488?v=4",
+ "description": "An uGMRT Primary Beam Corrector with input FITS files",
+ "topics": []
+ },
+ {
+ "uid": "github/temuller/piscola",
+ "url": "https://github.com/temuller/piscola",
+ "rel": "/software/repository/github/temuller/piscola",
+ "avatar": "https://avatars.githubusercontent.com/u/20286110?v=4",
+ "description": "Supernova light-curve fitting code",
"topics": [
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- "quantum",
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- "dynamics",
- "molecular-dynamics",
- "do-it-yourself",
- "library",
- "methodology-development",
- "electronic-structure",
- "semiempirical-methods",
- "atomic-orbitals",
- "object-oriented",
- "utilities"
+ "python",
+ "supernova",
+ "lightcurves",
+ "gaussian-processes",
+ "reproducible-science",
+ "data-science",
+ "data-driven",
+ "supernovae"
]
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- "description": "Code to simulate biases introduced by using different limb-darkening laws as explained in Espinoza & Jord\u00e1n (2016)",
- "topics": []
+ "uid": "github/temuller/hostphot",
+ "url": "https://github.com/temuller/hostphot",
+ "rel": "/software/repository/github/temuller/hostphot",
+ "avatar": "https://avatars.githubusercontent.com/u/20286110?v=4",
+ "description": "HostPhot: global and local photometry of galaxies hosting supernovae or other transients",
+ "topics": [
+ "cosmology",
+ "supernova",
+ "galaxy",
+ "python",
+ "photometry",
+ "sep",
+ "sextractor",
+ "transients"
+ ]
},
{
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- "description": "MC-SPAM is an algorithm to generate limb-darkening coefficients from models that are comparable to transit photometry according to the formalism described in Espinoza & Jordan (2015)",
- "topics": []
+ "uid": "github/statsmodels/statsmodels",
+ "url": "https://github.com/statsmodels/statsmodels",
+ "rel": "/software/repository/github/statsmodels/statsmodels",
+ "avatar": "https://avatars3.githubusercontent.com/u/717666?v=4",
+ "description": "Statsmodels: statistical modeling and econometrics in Python",
+ "topics": [
+ "python",
+ "statistics",
+ "econometrics",
+ "data-analysis",
+ "generalized-linear-models",
+ "timeseries-analysis",
+ "regression-models"
+ ]
},
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- "avatar": "https://avatars.githubusercontent.com/u/2046682?v=4",
- "description": "Tools for fitting transiting exoplanet lightcurves and radial velocities",
- "topics": []
+ "uid": "github/felixbur/nkululeko",
+ "url": "https://github.com/felixbur/nkululeko",
+ "rel": "/software/repository/github/felixbur/nkululeko",
+ "avatar": "https://avatars.githubusercontent.com/u/2063797?v=4",
+ "description": "Machine learning speaker characteristics",
+ "topics": [
+ "speech",
+ "machine-learning",
+ "pytorch"
+ ]
},
{
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- "url": "https://github.com/nespinoza/limb-darkening",
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- "description": "Codes to generate limb-darkening coefficients using arbitrary response functions as explained in Espinoza & Jordan (2015)",
- "topics": []
+ "uid": "github/jarvist/Julia-Phonons",
+ "url": "https://github.com/jarvist/Julia-Phonons",
+ "rel": "/software/repository/github/jarvist/Julia-Phonons",
+ "avatar": "https://avatars.githubusercontent.com/u/82852?v=4",
+ "description": "Julia codes to play with Phonons",
+ "topics": [
+ "phonopy",
+ "phonons"
+ ]
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{
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- "rel": "/software/repository/github/nespinoza/juliet",
- "avatar": "https://avatars.githubusercontent.com/u/2046682?v=4",
- "description": "A versatile modelling tool for transiting and non-transiting (single and multiple) exoplanetary systems",
+ "uid": "github/haile493/Colorectal-cancer-detection-using-ColoPola-dataset",
+ "url": "https://github.com/haile493/Colorectal-cancer-detection-using-ColoPola-dataset",
+ "rel": "/software/repository/github/haile493/Colorectal-cancer-detection-using-ColoPola-dataset",
+ "avatar": "https://avatars.githubusercontent.com/u/26425008?v=4",
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- "description": "a Bioinformatics Application for Navigating De novo Assembly Graphs Easily",
+ "uid": "github/astro-seanwhy/ExoInt",
+ "url": "https://github.com/astro-seanwhy/ExoInt",
+ "rel": "/software/repository/github/astro-seanwhy/ExoInt",
+ "avatar": "https://avatars.githubusercontent.com/u/30588030?v=4",
+ "description": "Rocky planets as devolatilized stars (Source codes for Wang et al. 2019, MNRAS, doi.org/10.1093/mnras/sty2749). Purpose: devolatilize stellar abundances to produce rocky exoplanetary bulk composition, with which constrain the modelling of the exoplanet interiors. ",
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- "description": "GREYC's Magic for Image Computing: A Full-Featured Open-Source Framework for Image Processing",
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+ "description": "Pulses in Python",
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+ "description": "OSeMOSYS Tools for Energy",
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"topics": [
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- "phylogenetics",
- "maximum-likelihood",
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+ "barcode"
]
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- "reliability-score",
- "noise-peaks",
- "spectra",
- "nmr"
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+ "avatar": "https://avatars.githubusercontent.com/u/32897658?v=4",
+ "description": " Tool to estimate genome quality of microbial eukaryotes ",
+ "topics": []
+ },
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- "neutron-stars",
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+ "dark-matter",
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]
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+ "reionization",
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]
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+ "avatar": "https://avatars.githubusercontent.com/u/38315264?v=4",
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"topics": []
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+ "description": "Orange modules for text processing in the project What Works When for Whom? ",
+ "topics": []
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+ "description": "2D/3D serial and parallel triangular mesh generation tool for Finite Element Methods.",
"topics": [
- "exoplanets",
- "tess",
- "kepler",
- "k2",
- "pipeline",
- "transits"
+ "meshing",
+ "seismic-velocity-models",
+ "parallel",
+ "distmesh"
]
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"topics": []
},
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+ "avatar": "https://avatars.githubusercontent.com/u/60273950?v=4",
+ "description": "Simplifying the discovery and usage of machine-learning ready datasets in materials science and chemistry",
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- "gwt",
- "computational-biology",
- "bioinformatics",
- "pwm",
- "opls",
- "yaffe-lab",
- "koch-institute",
- "mit"
+ "data-science",
+ "machine-learning",
+ "materials-science",
+ "datasets",
+ "chemistry"
]
},
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- "url": "https://github.com/bonsai-team/matam",
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- "avatar": "https://avatars.githubusercontent.com/u/24830634?v=4",
- "description": "Mapping-Assisted Targeted-Assembly for Metagenomics",
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+ "avatar": "https://avatars.githubusercontent.com/u/86698972?v=4",
+ "description": "TransHLA: A hybrid transformer model for peptide-HLA epitope detection.",
"topics": [
- "metagenomics",
- "assembly",
- "bioinformatics",
- "rrna"
+ "epitope",
+ "hla",
+ "transformers",
+ "llms"
]
},
{
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- "description": "The Massively Parallel Quantum Chemistry program, MPQC, computes properties of atoms and molecules from first principles using the time independent Schr\u00f6dinger equation.",
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+ "avatar": "https://avatars.githubusercontent.com/u/5920106?v=4",
+ "description": "Python library that help to detect of macromolecular, systems genetic pathways\u2026 in prokaryotes protein datasets",
"topics": []
},
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- "avatar": "https://avatars.githubusercontent.com/u/48671306?v=4",
- "description": "Simula Cardiac ElectroMechanics Solver",
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+ "url": "https://github.com/gem-pasteur/macsyfinder",
+ "rel": "/software/repository/github/gem-pasteur/macsyfinder",
+ "avatar": "https://avatars.githubusercontent.com/u/5920106?v=4",
+ "description": "MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.",
"topics": []
},
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- "description": "PiSCAT is a python-based package with a graphical user interface for performing high-performance analysis on a variety of iSCAT measurements.",
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+ "url": "https://github.com/gem-pasteur/Integron_Finder",
+ "rel": "/software/repository/github/gem-pasteur/Integron_Finder",
+ "avatar": "https://avatars.githubusercontent.com/u/5920106?v=4",
+ "description": "Bioinformatics tool to find integrons in bacterial genomes",
"topics": [
- "python",
- "data-analysis",
- "microscopy-images",
- "nano-particles"
+ "bioinformatics",
+ "bacterial-genomes",
+ "identification"
]
},
{
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- "description": "JexoSim (JWST Exoplanet Observation Simulator) 2.0, is a time-domain simulator of JWST exoplanet transit observations.",
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- "avatar": "https://avatars.githubusercontent.com/u/63761723?v=4",
- "description": "Python package for Bayesian Model Mixing",
+ "uid": "github/samuelefiorini/tangle",
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+ "rel": "/software/repository/github/samuelefiorini/tangle",
+ "avatar": "https://avatars.githubusercontent.com/u/15000098?v=4",
+ "description": "TANGLE: Time spAN Guided neuraL attEntion model",
"topics": [
- "bayesian-model-mixing",
- "bayesian-statistics",
- "regression-trees"
+ "machine-learning",
+ "data-science",
+ "healthcare",
+ "medicare",
+ "pharmaceuticals",
+ "australia"
]
},
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- "topics": [
- "experimental",
- "design",
- "breeding",
- "agricultural"
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+ "uid": "github/denglab/SeqSero",
+ "url": "https://github.com/denglab/SeqSero",
+ "rel": "/software/repository/github/denglab/SeqSero",
+ "avatar": "https://avatars.githubusercontent.com/u/10891728?v=4",
+ "description": "Salmonella serotyping from genome sequencing data",
+ "topics": []
},
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- "description": "Mocking IFS data cube of the Milky Way",
+ "uid": "github/SCIInstitute/UncertainSCI",
+ "url": "https://github.com/SCIInstitute/UncertainSCI",
+ "rel": "/software/repository/github/SCIInstitute/UncertainSCI",
+ "avatar": "https://avatars.githubusercontent.com/u/1399384?v=4",
+ "description": null,
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},
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- "inverse-problems",
- "nmr",
- "nmr-relaxation",
- "nmr-diffusion"
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+ "rel": "/software/repository/github/icecube/FIRESONG",
+ "avatar": "https://avatars.githubusercontent.com/u/74313698?v=4",
+ "description": "FIRst Extragalactic Simulation Of Neutrino and Gamma-ray",
+ "topics": []
},
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- "avatar": "https://avatars1.githubusercontent.com/u/22908438?v=4",
- "description": "Phylogenetic tree viewer based on D3.js",
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+ "rel": "/software/repository/github/icecube/toise",
+ "avatar": "https://avatars.githubusercontent.com/u/74313698?v=4",
+ "description": "Framework to describe the performance of high-energy neutrino detectors",
"topics": []
},
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- "avatar": "https://avatars.githubusercontent.com/u/218604512?v=4",
- "description": "Hepatocyte ploidy protocol",
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+ "rel": "/software/repository/github/icecube/TauRunner",
+ "avatar": "https://avatars.githubusercontent.com/u/74313698?v=4",
+ "description": "Code to propagate tau neutrinos at very high energies",
"topics": []
},
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- "amr",
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- "scientific-computing",
- "hpc",
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- "radiuss"
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+ "avatar": "https://avatars.githubusercontent.com/u/21238080?v=4",
+ "description": "A library of data interpolation and smoothing functions",
+ "topics": []
},
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- "description": "A visual system for the exploration of cardiac transcriptome data",
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+ "rel": "/software/repository/github/SciML/GlobalSensitivity.jl",
+ "avatar": "https://avatars.githubusercontent.com/u/21238080?v=4",
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- "avatar": "https://avatars.githubusercontent.com/u/59233777?v=4",
- "description": "Enhancing Hi-C matrix resolution",
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+ "url": "https://github.com/chombo-discharge/chombo-discharge",
+ "rel": "/software/repository/github/chombo-discharge/chombo-discharge",
+ "avatar": "https://avatars.githubusercontent.com/u/82454163?v=4",
+ "description": "Beta release of chombo-discharge, a research code for low-temperature plasma which uses a Cartesian cut-cell formalism.",
"topics": []
},
{
- "uid": "github/simon-smart88/shinyscholar",
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- "avatar": "https://avatars.githubusercontent.com/u/137152810?v=4",
- "description": "A template for creating modular shiny applications that meet academic standards and are reproducible",
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+ "url": "https://github.com/justinmathias/isocalcR",
+ "rel": "/software/repository/github/justinmathias/isocalcR",
+ "avatar": "https://avatars.githubusercontent.com/u/52084610?v=4",
+ "description": "R Package containing widely used isotope theory functions",
"topics": []
},
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- "url": "https://github.com/siavashk/pycpd",
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- "avatar": "https://avatars.githubusercontent.com/u/1020752?v=4",
- "description": "Pure Numpy Implementation of the Coherent Point Drift Algorithm",
+ "uid": "github/AndrewGibbs/PathFinder",
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+ "rel": "/software/repository/github/AndrewGibbs/PathFinder",
+ "avatar": "https://avatars.githubusercontent.com/u/32740541?v=4",
+ "description": "A Matlab/Octave package for oscillatory integration",
"topics": [
- "point-cloud",
- "registration",
- "expectation-maximization",
- "python"
+ "oscillatory-integrals",
+ "steepest-descent",
+ "saddle-point"
]
},
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- "url": "https://github.com/cloudflex-project/cloudflex",
- "rel": "/software/repository/github/cloudflex-project/cloudflex",
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- "description": null,
+ "uid": "github/AstroChem/VISIBLE",
+ "url": "https://github.com/AstroChem/VISIBLE",
+ "rel": "/software/repository/github/AstroChem/VISIBLE",
+ "avatar": "https://avatars.githubusercontent.com/u/11094466?v=4",
+ "description": "VISIbility Based Line Extraction",
"topics": []
},
{
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- "description": "Python pipeline to generate mock astrometric and photometric catalogs of synthetic stars derived from particle-based simulated star populations",
- "topics": []
+ "uid": "github/muLAn-project/muLAn",
+ "url": "https://github.com/muLAn-project/muLAn",
+ "rel": "/software/repository/github/muLAn-project/muLAn",
+ "avatar": "https://avatars.githubusercontent.com/u/29952484?v=4",
+ "description": "muLAn: MICROlensing Analysis software",
+ "topics": [
+ "microlensing",
+ "modelling",
+ "astronomy",
+ "science"
+ ]
},
{
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- "url": "https://github.com/klho/FLAM",
- "rel": "/software/repository/github/klho/FLAM",
- "avatar": "https://avatars1.githubusercontent.com/u/1369071?v=4",
- "description": "Fast linear algebra in MATLAB",
+ "uid": "github/LucIJspeert/eclipsr",
+ "url": "https://github.com/LucIJspeert/eclipsr",
+ "rel": "/software/repository/github/LucIJspeert/eclipsr",
+ "avatar": "https://avatars.githubusercontent.com/u/46969344?v=4",
+ "description": "Recipe to fully automatically find individual eclipses in light curves, determine ephemerides and more",
"topics": []
},
{
@@ -17919,606 +17754,640 @@
"topics": []
},
{
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- "rel": "/software/repository/github/savage13/sacio",
- "avatar": "https://avatars.githubusercontent.com/u/126514?v=4",
- "description": "sacio library",
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+ "rel": "/software/repository/github/PyFstat/PyFstat",
+ "avatar": "https://avatars.githubusercontent.com/u/60369643?v=4",
+ "description": "a python package for gravitational wave analysis with the F-statistic",
"topics": [
- "sac",
- "iris",
- "sacio-library",
- "seismic"
+ "python3",
+ "gravitational-waves",
+ "ligo",
+ "neutron-star",
+ "virgo",
+ "gravity",
+ "astrophysics",
+ "pycuda"
]
},
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- "description": "Easily Extracting Information About Your Data",
- "topics": [
- "package-development"
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+ "uid": "github/ericsteinbring/PDQ",
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+ "rel": "/software/repository/github/ericsteinbring/PDQ",
+ "avatar": "https://avatars.githubusercontent.com/u/127259226?v=4",
+ "description": "The IDL code PDQ predicts the positions on the sky of high-redshift quasars that should provide photons that are both acausal and uncorrelated. The best dates and times for viewing those simultaneously with Gemini `Alopeke/Zorro (for high-framerate photometry) in the coming semester are reported. ",
+ "topics": []
},
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- "url": "https://github.com/AntonelliLab/seqcap_processor",
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- "avatar": "https://avatars.githubusercontent.com/u/15021707?v=4",
- "description": "Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics",
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+ "rel": "/software/repository/github/ericsteinbring/Special-Blurring",
+ "avatar": "https://avatars.githubusercontent.com/u/127259226?v=4",
+ "description": "Calculates the effect of quantum-foam blurring, appropriate for the special gamma-ray burst GRB221009A.",
"topics": []
},
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- "uid": "github/xinyiguan/py2lispIDyOM",
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- "avatar": "https://avatars.githubusercontent.com/u/43217135?v=4",
- "description": "A Python package for IDyOM",
+ "uid": "github/ericsteinbring/World_Observatory",
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+ "rel": "/software/repository/github/ericsteinbring/World_Observatory",
+ "avatar": "https://avatars.githubusercontent.com/u/127259226?v=4",
+ "description": "World Observatory visualizes S/N-versus-cost tradeoffs for large optical/near-infrared telescopes.",
"topics": []
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- "avatar": "https://avatars.githubusercontent.com/u/93661605?v=4",
- "description": "DTWC++",
+ "uid": "github/aL3x-O-o-Hung/CAT-Net",
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- "time-series-clustering"
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+ "grape",
+ "quantum",
+ "optimal-control"
]
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+ "description": "Collection of Multi-Fidelity benchmark functions",
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+ "multi-fidelity",
+ "benchmark-functions",
+ "benchmark-suite",
+ "benchmarking-suite",
+ "python"
+ ]
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{
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+ "description": "LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.",
+ "topics": [
+ "bioinformatics",
+ "metagenomics",
+ "metagenomic-analysis",
+ "metagenomics-binning",
+ "python",
+ "pacbio",
+ "nanopore-sequencing"
+ ]
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+ "description": "Find logos in images and videos in just one-shot. Never be embarrassed again to say that you have a small data situation!",
+ "topics": [
+ "one-shot-learning",
+ "logo-detection",
+ "object-detection",
+ "image-processing",
+ "video-processing",
+ "small-dataset"
+ ]
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+ "uid": "github/QuantumPlasma/SFQEDtoolkit",
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- "description": "SolarZip\uff1aAn efficient and adaptive compression framework for Sloar EUV data",
+ "uid": "github/sihanjiao/j-comb",
+ "url": "https://github.com/SihanJiao/J-comb",
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- "description": "A Neural Network based emulator for GW spectrum from cosmological FOPTs",
+ "uid": "github/kinnala/scikit-fem",
+ "url": "https://github.com/kinnala/scikit-fem",
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+ "avatar": "https://avatars2.githubusercontent.com/u/973268?v=4",
+ "description": "Simple finite element assemblers for Python",
"topics": []
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- "description": "Development for SAIGE and SAIGE-GENE(+)",
+ "uid": "github/DirectDM/directdm-py",
+ "url": "https://github.com/DirectDM/directdm-py",
+ "rel": "/software/repository/github/DirectDM/directdm-py",
+ "avatar": "https://avatars.githubusercontent.com/u/30795796?v=4",
+ "description": "Python version of the DirectDM package",
"topics": []
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{
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- "avatar": "https://avatars.githubusercontent.com/u/5906282?v=4",
- "description": "An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.",
+ "uid": "github/DirectDM/directdm-mma",
+ "url": "https://github.com/DirectDM/directdm-mma",
+ "rel": "/software/repository/github/DirectDM/directdm-mma",
+ "avatar": "https://avatars.githubusercontent.com/u/30795796?v=4",
+ "description": "DirectDM Mathematica package",
"topics": []
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{
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- "url": "https://github.com/phenology/cgc",
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- "description": "A clustering tool for geospatial applications",
+ "uid": "github/jeetsukumaran/DendroPy",
+ "url": "https://github.com/jeetsukumaran/DendroPy",
+ "rel": "/software/repository/github/jeetsukumaran/DendroPy",
+ "avatar": "https://avatars.githubusercontent.com/u/26183?v=4",
+ "description": "A Python library for phylogenetic scripting, simulation, data processing and manipulation.",
"topics": []
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- "url": "https://github.com/arielmission-space/PAOS",
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- "description": "PAOS is a fast, modern, and reliable Python package for Physical Optics studies.",
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- "gui",
- "open-source",
- "optics",
- "optics-simulation",
- "paos",
- "psf",
- "python",
- "ray-tracing",
- "wavefront"
- ]
- },
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+ "uid": "github/legolason/PyQSOFit",
+ "url": "https://github.com/legolason/PyQSOFit",
+ "rel": "/software/repository/github/legolason/PyQSOFit",
+ "avatar": "https://avatars.githubusercontent.com/u/8182924?v=4",
+ "description": "A code to fit the spectrum of quasar",
"topics": []
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- "url": "https://github.com/samirmartins/pydaq",
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- "avatar": "https://avatars.githubusercontent.com/u/33382485?v=4",
- "description": "Data Acquisition and Experimental Analysis with Python and Graphical User Interface",
+ "uid": "github/rickhelmus/patRoon",
+ "url": "https://github.com/rickhelmus/patRoon",
+ "rel": "/software/repository/github/rickhelmus/patRoon",
+ "avatar": "https://avatars.githubusercontent.com/u/37015911?v=4",
+ "description": "Workflow solutions for mass-spectrometry based non-target analysis.",
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- "national-instruments",
- "nidaq",
- "nidaqmx",
- "pysimplegui",
- "python",
- "step-response",
- "arduino",
- "arduino-library",
- "graphical-user-interface",
- "real-datasets"
+ "mass-spectrometry",
+ "r",
+ "non-target"
]
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- "avatar": "https://avatars.githubusercontent.com/u/157588017?v=4",
- "description": "A Python tool for high-throughput retrieval of protein and/or gene sequences from NCBI GenBank for single or multiple taxa.",
+ "uid": "github/HeracleBT/vEMstitch",
+ "url": "https://github.com/HeracleBT/vEMstitch",
+ "rel": "/software/repository/github/HeracleBT/vEMstitch",
+ "avatar": "https://avatars.githubusercontent.com/u/27627517?v=4",
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- "avatar": "https://avatars.githubusercontent.com/u/3028041?v=4",
- "description": "CARMA Data Reduction Pipeline",
+ "uid": "github/bwkeller/PASTA",
+ "url": "https://github.com/bwkeller/PASTA",
+ "rel": "/software/repository/github/bwkeller/PASTA",
+ "avatar": "https://avatars.githubusercontent.com/u/935082?v=4",
+ "description": "Python Astronomical Stacking Tool Array",
"topics": []
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- "description": "SEPARATE is an open-source, GUI-based software package that provides users with a fast, reliable, and automated method to post-process tipping bucket rain gauge (TBRG) data.",
+ "uid": "github/eead-csic-compbio/get_homologues",
+ "url": "https://github.com/eead-csic-compbio/get_homologues",
+ "rel": "/software/repository/github/eead-csic-compbio/get_homologues",
+ "avatar": "https://avatars.githubusercontent.com/u/15164836?v=4",
+ "description": "GET_HOMOLOGUES: a versatile software package for pan-genome analysis",
"topics": [
- "geohazards",
- "hydrology",
- "raingauge",
- "tipping-bucket"
+ "pangenome",
+ "bacteria",
+ "annotation",
+ "plants",
+ "transcriptome",
+ "clustering",
+ "fasta",
+ "genbank",
+ "pangene"
]
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- "description": "A Monte Carlo simulation package for radio neutrino detectors",
- "topics": [
- "simulation",
- "neutrino",
- "radio"
- ]
+ "uid": "github/tomoyukif/MCPtaggR",
+ "url": "https://github.com/tomoyukif/MCPtaggR",
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+ "avatar": "https://avatars.githubusercontent.com/u/40555133?v=4",
+ "description": null,
+ "topics": []
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- "description": "Metrics for the verification, evaluation and optimisation of forecasts, predictions or models.",
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+ "url": "https://github.com/project-lighter/lighter",
+ "rel": "/software/repository/github/project-lighter/lighter",
+ "avatar": "https://avatars.githubusercontent.com/u/122651785?v=4",
+ "description": "Streamline deep learning experiments using config files",
"topics": [
- "dask",
- "forecast-evaluation",
- "forecast-verification",
- "forecasting",
- "model-validation",
- "pandas",
- "python",
- "xarray",
- "climate",
- "oceanography",
- "weather",
- "verification",
- "contingency-table"
+ "classification",
+ "config",
+ "monai",
+ "object-detection",
+ "pytorch",
+ "pytorch-lightning",
+ "segmentation",
+ "self-supervised-learning",
+ "hydra",
+ "yaml",
+ "deep-learning"
]
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- "description": "A tool for profiling long STRs from short reads",
- "topics": []
- },
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- "avatar": "https://avatars.githubusercontent.com/u/19779699?v=4",
- "description": "Simulation tool for ChIP- and other -seq experiments",
+ "uid": "github/GOALS-survey/CAFE",
+ "url": "https://github.com/GOALS-survey/CAFE",
+ "rel": "/software/repository/github/GOALS-survey/CAFE",
+ "avatar": "https://avatars.githubusercontent.com/u/121973992?v=4",
+ "description": "Spectral decomposition that works for astronomical data",
"topics": []
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{
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- "url": "https://github.com/RBrearton/islatu",
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- "avatar": "https://avatars.githubusercontent.com/u/82819976?v=4",
- "description": "X-ray reflectometry reduction from Diamond Light Source",
+ "uid": "github/ruta-k/uGMRT-pipeline",
+ "url": "https://github.com/ruta-k/uGMRT-pipeline",
+ "rel": "/software/repository/github/ruta-k/uGMRT-pipeline",
+ "avatar": "https://avatars.githubusercontent.com/u/38125415?v=4",
+ "description": null,
"topics": []
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{
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- "rel": "/software/repository/github/hiddenSymmetries/simsopt",
- "avatar": "https://avatars.githubusercontent.com/u/61125640?v=4",
- "description": "Simons Stellarator Optimizer Code",
+ "uid": "github/lskatz/fasten",
+ "url": "https://github.com/lskatz/fasten",
+ "rel": "/software/repository/github/lskatz/fasten",
+ "avatar": "https://avatars.githubusercontent.com/u/14798?v=4",
+ "description": ":construction_worker: Fasten toolkit, for streaming operations on fastq files",
"topics": [
- "stellarator",
- "stellarators",
- "plasma",
- "fusion",
- "optimization",
- "plasma-physics",
- "nuclear-fusion"
+ "bioinformatics",
+ "fastq-files",
+ "rust"
]
},
{
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- "url": "https://github.com/NERC-CEH/RMAVIS",
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- "avatar": "https://avatars.githubusercontent.com/u/5802506?v=4",
- "description": "A R Shiny application for the assignment of vegetation survey plot data to GB NVC communities with additional exploratory analyses.",
+ "uid": "github/lskatz/SneakerNet",
+ "url": "https://github.com/lskatz/SneakerNet",
+ "rel": "/software/repository/github/lskatz/SneakerNet",
+ "avatar": "https://avatars.githubusercontent.com/u/14798?v=4",
+ "description": ":feet: QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run",
"topics": []
},
{
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- "url": "https://github.com/candYgene/siga",
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- "description": "Semantically Interoperable Genome Annotations",
+ "uid": "github/MarkusPic/intensity_duration_frequency_analysis",
+ "url": "https://github.com/MarkusPic/intensity_duration_frequency_analysis",
+ "rel": "/software/repository/github/MarkusPic/intensity_duration_frequency_analysis",
+ "avatar": "https://avatars.githubusercontent.com/u/11568131?v=4",
+ "description": "heavy rain as a function of the duration and the return period acc. to DWA-A 531 (2012) This program reads the measurement data of the rainfall and calculates the distribution of the rainfall as a function of the return period and the duration for duration steps up to 12 hours (and more) and return period in a range of '0.5a <= T_n <= 100a'",
"topics": [
- "rdf",
- "rdflib",
- "genome-annotation",
- "gff",
- "triples"
+ "heavy-rain",
+ "idf",
+ "intensity-duration-frequency",
+ "design-rainfall",
+ "rainfall",
+ "precipitation",
+ "analysis",
+ "duration",
+ "dwa",
+ "measurement-data",
+ "duration-steps",
+ "return-period",
+ "dwa-a-531",
+ "kostra",
+ "dwd",
+ "python"
]
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- "avatar": "https://avatars2.githubusercontent.com/u/27219573?v=4",
- "description": "Linked Data Platform for Plant Breeding & Genomics",
+ "uid": "github/cupy/cupy",
+ "url": "https://github.com/cupy/cupy",
+ "rel": "/software/repository/github/cupy/cupy",
+ "avatar": "https://avatars2.githubusercontent.com/u/23187665?v=4",
+ "description": "NumPy-like API accelerated with CUDA",
"topics": [
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- "virtuoso-server",
- "genome-annotation",
- "qtl",
- "triples",
- "sparql",
- "genomics",
- "plant-breeding",
- "solanaceae"
+ "cuda",
+ "cudnn",
+ "cublas",
+ "cusolver",
+ "nccl",
+ "python",
+ "numpy",
+ "cupy",
+ "curand",
+ "cusparse",
+ "gpu",
+ "cutensor",
+ "scipy",
+ "nvtx",
+ "nvrtc"
]
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- "description": "QTLTableMiner++ tool for mining tables in scientific articles",
+ "uid": "github/rinikerlab/Ensembler",
+ "url": "https://github.com/rinikerlab/Ensembler",
+ "rel": "/software/repository/github/rinikerlab/Ensembler",
+ "avatar": "https://avatars.githubusercontent.com/u/48841290?v=4",
+ "description": null,
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{
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- "avatar": "https://avatars2.githubusercontent.com/u/27219573?v=4",
- "description": "Linked Data Platform for Animal Breeding & Genomics",
+ "uid": "github/nlppln/nlppln",
+ "url": "https://github.com/nlppln/nlppln",
+ "rel": "/software/repository/github/nlppln/nlppln",
+ "avatar": "https://avatars3.githubusercontent.com/u/25154063?v=4",
+ "description": "NLP pipeline software using common workflow language",
"topics": [
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- "rdf",
- "virtuoso-server",
- "genome-annotation",
- "qtl",
- "triples",
- "sparql",
- "genomics",
- "animal-breeding",
- "database"
+ "nlp",
+ "cwl",
+ "workflow",
+ "pipeline",
+ "text-mining"
]
},
{
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- "avatar": "https://avatars.githubusercontent.com/u/13796294?v=4",
- "description": "A bioinformatic tool for identifying protein histidine phosphorylation sites",
+ "uid": "github/GreenBankObservatory/gbtgridder",
+ "url": "https://github.com/GreenBankObservatory/gbtgridder",
+ "rel": "/software/repository/github/GreenBankObservatory/gbtgridder",
+ "avatar": "https://avatars.githubusercontent.com/u/20340212?v=4",
+ "description": "A stand-alone spectral gridder and imager for the Green Bank Telescope",
"topics": []
},
{
- "uid": "github/HalHaggard/EARL",
- "url": "https://github.com/HalHaggard/EARL",
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- "description": "Exoplanet Analytic Reflected Lightcurves (EARL): This Mathematica code allows you to compute the analytic form of a reflected lightcurve given a spherical harmonic decomposition of the planet albedo map and the viewing and orbital geometries. The theoretical foundation for this code is laid out in the paper \"Analytic Reflected Lightcurves for Exoplanets\" by Hal M. Haggard and Nicolas B. Cowan, which can be found the arXiv.",
+ "uid": "github/Peter-Hogg/SLAP2_Utils",
+ "url": "https://github.com/Peter-Hogg/SLAP2_Utils",
+ "rel": "/software/repository/github/Peter-Hogg/SLAP2_Utils",
+ "avatar": "https://avatars.githubusercontent.com/u/39841502?v=4",
+ "description": "SLAP2 Helper Functions",
"topics": []
},
{
- "uid": "github/molscat/molscat",
- "url": "https://github.com/molscat/molscat",
- "rel": "/software/repository/github/molscat/molscat",
- "avatar": "https://avatars.githubusercontent.com/u/44835777?v=4",
- "description": null,
+ "uid": "github/Ohervet/Bjet_MCMC",
+ "url": "https://github.com/Ohervet/Bjet_MCMC",
+ "rel": "/software/repository/github/Ohervet/Bjet_MCMC",
+ "avatar": "https://avatars.githubusercontent.com/u/52715983?v=4",
+ "description": "Bjet_MCMC is a tool to to automatically model multiwavelength spectral energy distributions of blazars, considering one-zone synchrotron-self-Compton (SSC) model with or without the addition of external inverse-Compton process from the thermal emission of the nucleus. It also contains manual fitting functionalities for multi-zone SSC modeling. ",
"topics": []
},
{
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- "rel": "/software/repository/github/soundata/soundata",
- "avatar": "https://avatars.githubusercontent.com/u/73146954?v=4",
- "description": "Python library for downloading, loading & working with sound datasets",
- "topics": [
- "audio",
- "python",
- "dataset",
- "environmental-sound",
- "bioacoustics",
- "urban-sound"
- ]
+ "uid": "github/xczhou-astro/galaxyGenius",
+ "url": "https://github.com/xczhou-astro/galaxyGenius",
+ "rel": "/software/repository/github/xczhou-astro/galaxyGenius",
+ "avatar": "https://avatars.githubusercontent.com/u/76081166?v=4",
+ "description": "A Mock galaxy generator for various telescopes from hydrodynamical simulations",
+ "topics": []
},
{
- "uid": "github/gnuradio/gnuradio",
- "url": "https://github.com/gnuradio/gnuradio",
- "rel": "/software/repository/github/gnuradio/gnuradio",
- "avatar": "https://avatars.githubusercontent.com/u/1278659?v=4",
- "description": "GNU Radio \u2013 the Free and Open Software Radio Ecosystem",
+ "uid": "github/SMTG-UCL/ShakeNBreak",
+ "url": "https://github.com/SMTG-UCL/ShakeNBreak",
+ "rel": "/software/repository/github/SMTG-UCL/ShakeNBreak",
+ "avatar": "https://avatars.githubusercontent.com/u/14860406?v=4",
+ "description": "Defect structure-searching method employing chemically-guided bond distortions to locate ground-state and metastable structures of point defects in solid materials.",
"topics": [
- "sdr",
- "dsp",
- "wireless",
- "cybersecurity",
- "c-plus-plus",
- "python",
- "gnu",
- "radio",
- "gnuradio",
- "hacktoberfest"
+ "materials",
+ "materials-informatics",
+ "point-defects",
+ "science",
+ "computational-chemistry",
+ "pymatgen",
+ "python3",
+ "symmetry-breaking",
+ "structure-searching",
+ "vasp",
+ "distortions",
+ "ab-initio",
+ "dft",
+ "materials-design",
+ "semiconductors"
]
},
{
- "uid": "github/fitbenchmarking/fitbenchmarking",
- "url": "https://github.com/fitbenchmarking/fitbenchmarking",
- "rel": "/software/repository/github/fitbenchmarking/fitbenchmarking",
- "avatar": "https://avatars.githubusercontent.com/u/49585251?v=4",
- "description": "Tool for comparing the run time and accuracy of minimizers on fit benchmarking problems",
- "topics": []
+ "uid": "github/SMTG-UCL/surfaxe",
+ "url": "https://github.com/SMTG-UCL/surfaxe",
+ "rel": "/software/repository/github/SMTG-UCL/surfaxe",
+ "avatar": "https://avatars.githubusercontent.com/u/14860406?v=4",
+ "description": "Dealing with slabs for first principles calculations of surfaces",
+ "topics": [
+ "python3",
+ "science",
+ "computational-chemistry",
+ "materials",
+ "surfaces",
+ "pymatgen",
+ "vasp"
+ ]
},
{
- "uid": "github/najoshi/sickle",
- "url": "https://github.com/najoshi/sickle",
- "rel": "/software/repository/github/najoshi/sickle",
- "avatar": "https://avatars.githubusercontent.com/u/607905?v=4",
- "description": "Windowed Adaptive Trimming for fastq files using quality",
+ "uid": "github/mtazzari/uvplot",
+ "url": "https://github.com/mtazzari/uvplot",
+ "rel": "/software/repository/github/mtazzari/uvplot",
+ "avatar": "https://avatars.githubusercontent.com/u/6020226?v=4",
+ "description": "A simple package to make nice visibility plots and to export visibilites from MS tables",
"topics": []
},
{
- "uid": "github/thom991/MSIQuickView",
- "url": "https://github.com/thom991/MSIQuickView",
- "rel": "/software/repository/github/thom991/MSIQuickView",
- "avatar": "https://avatars.githubusercontent.com/u/10854661?v=4",
- "description": null,
+ "uid": "github/mtazzari/binary",
+ "url": "https://github.com/mtazzari/binary",
+ "rel": "/software/repository/github/mtazzari/binary",
+ "avatar": "https://avatars.githubusercontent.com/u/6020226?v=4",
+ "description": "This program computes the evolution of an accretion disc interacting with a binary system. Used in Tazzari, Lodato (2015).",
"topics": []
},
{
- "uid": "github/damar-wicaksono/uqtestfuns",
- "url": "https://github.com/damar-wicaksono/uqtestfuns",
- "rel": "/software/repository/github/damar-wicaksono/uqtestfuns",
- "avatar": "https://avatars.githubusercontent.com/u/5500067?v=4",
- "description": "A Python3 library of test functions from the uncertainty quantification community with a common interface for validation and benchmarking purposes.",
+ "uid": "github/mtazzari/galario",
+ "url": "https://github.com/mtazzari/galario",
+ "rel": "/software/repository/github/mtazzari/galario",
+ "avatar": "https://avatars.githubusercontent.com/u/6020226?v=4",
+ "description": "Gpu Accelerated Library for Analysing Radio Interferometer Observations",
"topics": [
- "python",
- "uncertainty-quantification",
- "metamodeling",
- "sensitivity-analysis",
- "test-functions",
- "reliability-analysis"
+ "gpu-accelerated-library",
+ "gpu",
+ "astronomy",
+ "interferometry",
+ "radio",
+ "radio-astronomy",
+ "fourier-analysis"
]
},
{
- "uid": "github/wuzhenao/CPPLS-MLP",
- "url": "https://github.com/wuzhenao/CPPLS-MLP",
- "rel": "/software/repository/github/wuzhenao/CPPLS-MLP",
- "avatar": "https://avatars.githubusercontent.com/u/114455899?v=4",
- "description": null,
- "topics": []
- },
- {
- "uid": "github/Computational-NeuroGenetics/deMeta-beta",
- "url": "https://github.com/Computational-NeuroGenetics/deMeta-beta",
- "rel": "/software/repository/github/Computational-NeuroGenetics/deMeta-beta",
- "avatar": "https://avatars.githubusercontent.com/u/69991253?v=4",
- "description": null,
+ "uid": "github/konradhoeffner/hdt",
+ "url": "https://github.com/KonradHoeffner/hdt",
+ "rel": "/software/repository/github/konradhoeffner/hdt",
+ "avatar": "https://avatars.githubusercontent.com/u/839577?v=4",
+ "description": "Library for the Header Dictionary Triples (HDT) compression file format for RDF data.",
"topics": []
},
{
- "uid": "github/Martinsos/edlib",
- "url": "https://github.com/Martinsos/edlib",
- "rel": "/software/repository/github/Martinsos/edlib",
- "avatar": "https://avatars.githubusercontent.com/u/1536647?v=4",
- "description": "Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.",
+ "uid": "github/mswzeus/TargetNet",
+ "url": "https://github.com/mswzeus/TargetNet",
+ "rel": "/software/repository/github/mswzeus/TargetNet",
+ "avatar": "https://avatars.githubusercontent.com/u/49700882?v=4",
+ "description": "Official Pytorch implementation of TargetNet, Bioinformatics 2022",
"topics": [
- "sequence-alignment",
- "edit-distance",
- "levehnstein-distance",
- "library",
- "c-plus-plus",
- "alignment-path",
- "python",
- "bioinformatics"
+ "targetnet",
+ "microrna-target-prediction",
+ "pytorch"
]
},
{
- "uid": "github/jeaadams/ExoPix",
- "url": "https://github.com/jeaadams/ExoPix",
- "rel": "/software/repository/github/jeaadams/ExoPix",
- "avatar": "https://avatars.githubusercontent.com/u/39896713?v=4",
- "description": null,
+ "uid": "github/wullm/fastdf",
+ "url": "https://github.com/wullm/fastdf",
+ "rel": "/software/repository/github/wullm/fastdf",
+ "avatar": "https://avatars.githubusercontent.com/u/13404568?v=4",
+ "description": "Integrate neutrino geodesics in linear theory.",
"topics": []
},
{
- "uid": "github/jmcbroome/BTE",
- "url": "https://github.com/jmcbroome/BTE",
- "rel": "/software/repository/github/jmcbroome/BTE",
- "avatar": "https://avatars.githubusercontent.com/u/42075829?v=4",
- "description": "Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit",
+ "uid": "github/wullm/zwindstroom",
+ "url": "https://github.com/wullm/zwindstroom",
+ "rel": "/software/repository/github/wullm/zwindstroom",
+ "avatar": "https://avatars.githubusercontent.com/u/13404568?v=4",
+ "description": "Library for cosmic neutrino calculations",
"topics": []
},
{
- "uid": "github/mirnylab/pairtools",
- "url": "https://github.com/open2c/pairtools",
- "rel": "/software/repository/github/mirnylab/pairtools",
- "avatar": "https://avatars.githubusercontent.com/u/70977326?v=4",
- "description": "CLI tools to process mapped Hi-C data",
- "topics": []
+ "uid": "github/Jonathanfreundlich/CuspCore",
+ "url": "https://github.com/Jonathanfreundlich/CuspCore",
+ "rel": "/software/repository/github/Jonathanfreundlich/CuspCore",
+ "avatar": "https://avatars.githubusercontent.com/u/51839232?v=4",
+ "description": "A model for core formation in dark matter haloes and ultra-diffuse galaxies by outflow episodes",
+ "topics": [
+ "galaxies",
+ "dark-matter",
+ "dark-matter-halos",
+ "feedback",
+ "galaxy-formation",
+ "galaxy-evolution"
+ ]
},
{
- "uid": "github/mirnylab/cooler",
- "url": "https://github.com/open2c/cooler",
- "rel": "/software/repository/github/mirnylab/cooler",
- "avatar": "https://avatars.githubusercontent.com/u/70977326?v=4",
- "description": "is a support library for a sparse, compressed, binary persistent storage format, also called cooler, used to store genomic interaction data, such as Hi-C contact matrices.",
+ "uid": "github/miniufo/xinvert",
+ "url": "https://github.com/miniufo/xinvert",
+ "rel": "/software/repository/github/miniufo/xinvert",
+ "avatar": "https://avatars.githubusercontent.com/u/9312831?v=4",
+ "description": "Invert geophysical fluid dynamic problems (elliptic partial differential equations) using SOR iteration method.",
"topics": [
- "contact-matrix",
- "hdf5",
- "python",
- "sparse",
- "genomics",
- "hi-c",
- "bioinformatics",
- "file-format",
- "cooler"
+ "successive-over-relaxation",
+ "inversion-problem",
+ "atmospheric-science",
+ "oceanography",
+ "meteorology",
+ "omega-equation",
+ "gill-matsuno-model",
+ "munk-stommel",
+ "wind-driven-circulation",
+ "eliassen-model",
+ "pv-inversion",
+ "streamfunction",
+ "velocity-potential",
+ "geophysical-fluid-dynamics",
+ "poisson-equation"
]
},
{
- "uid": "github/pysat/pysat",
- "url": "https://github.com/pysat/pysat",
- "rel": "/software/repository/github/pysat/pysat",
- "avatar": "https://avatars.githubusercontent.com/u/54805292?v=4",
- "description": "Generalized satellite and space science data processing and file management. ",
+ "uid": "github/BlauGroup/RNMC",
+ "url": "https://github.com/BlauGroup/RNMC",
+ "rel": "/software/repository/github/BlauGroup/RNMC",
+ "avatar": "https://avatars.githubusercontent.com/u/86630735?v=4",
+ "description": null,
+ "topics": []
+ },
+ {
+ "uid": "github/bccp/nbodykit",
+ "url": "https://github.com/bccp/nbodykit",
+ "rel": "/software/repository/github/bccp/nbodykit",
+ "avatar": "https://avatars.githubusercontent.com/u/11237396?v=4",
+ "description": "Analysis kit for large-scale structure datasets, the massively parallel way",
"topics": [
- "space",
- "satellite-data",
- "space-science",
- "measurements",
+ "astrophysics",
+ "cosmology",
+ "large-scale-structure",
+ "clustering",
+ "data-analysis",
"python",
- "netcdf",
- "nasa-data",
- "science-research",
- "ionosphere",
- "magnetosphere",
- "thermosphere",
- "radar-measurements",
- "nasa",
- "cubesat",
- "plasma",
- "electric-fields"
+ "mpi",
+ "mpi4py",
+ "parallel-computing"
]
},
{
- "uid": "github/shilpagarg/WHdenovo",
- "url": "https://github.com/shilpagarg/WHdenovo",
- "rel": "/software/repository/github/shilpagarg/WHdenovo",
- "avatar": "https://avatars2.githubusercontent.com/u/7416551?v=4",
+ "uid": "github/ngltr/sinaps",
+ "url": "https://github.com/ngltr/sinaps",
+ "rel": "/software/repository/github/ngltr/sinaps",
+ "avatar": "https://avatars.githubusercontent.com/u/49352943?v=4",
"description": null,
"topics": []
},
{
- "uid": "github/SihaoCheng/WD_models",
- "url": "https://github.com/SihaoCheng/WD_models",
- "rel": "/software/repository/github/SihaoCheng/WD_models",
- "avatar": "https://avatars.githubusercontent.com/u/35247024?v=4",
- "description": "I provide a python package for transformations between WD photometry (Gaia, SDSS, WISE, and many more) and physical parameters, based on interpolation of existing atmosphere grid and cooling models. If you use this tool, please cite this website and the corresponding papers of atmosphere grid (synthetic colors) and cooling models. ",
+ "uid": "github/JonasRieger/ldaPrototype",
+ "url": "https://github.com/JonasRieger/ldaPrototype",
+ "rel": "/software/repository/github/JonasRieger/ldaPrototype",
+ "avatar": "https://avatars0.githubusercontent.com/u/23215382?v=4",
+ "description": "Determine a Prototype from a number of runs of Latent Dirichlet Allocation (LDA) measuring its similarities with S-CLOP: A procedure to select the LDA run with highest mean pairwise similarity, which is measured by S-CLOP (Similarity of multiple sets by Clustering with Local Pruning), to all other runs.",
+ "topics": [
+ "topicmodeling",
+ "topicmodelling",
+ "lda",
+ "topic-models",
+ "topic-model",
+ "topic-similarities",
+ "text-mining",
+ "textdata",
+ "latent-dirichlet-allocation",
+ "modelselection",
+ "model-selection"
+ ]
+ },
+ {
+ "uid": "github/yapenzhang/excalibuhr",
+ "url": "https://github.com/yapenzhang/excalibuhr",
+ "rel": "/software/repository/github/yapenzhang/excalibuhr",
+ "avatar": "https://avatars.githubusercontent.com/u/45408119?v=4",
+ "description": "A pipeline for high-resolution spectral data reduction",
"topics": []
},
{
- "uid": "github/devosoft/avida",
- "url": "https://github.com/devosoft/avida",
- "rel": "/software/repository/github/devosoft/avida",
- "avatar": "https://avatars.githubusercontent.com/u/468914?v=4",
- "description": null,
+ "uid": "github/pyro-ppl/numpyro",
+ "url": "https://github.com/pyro-ppl/numpyro",
+ "rel": "/software/repository/github/pyro-ppl/numpyro",
+ "avatar": "https://avatars.githubusercontent.com/u/46794900?v=4",
+ "description": "Probabilistic programming with NumPy powered by JAX for autograd and JIT compilation to GPU/TPU/CPU.",
"topics": [
- "avida"
+ "pyro",
+ "jax",
+ "hmc",
+ "inference-algorithms",
+ "numpy",
+ "bayesian-inference",
+ "probabilistic-programming",
+ "mcmc"
]
},
{
- "uid": "github/ntveem/sterile-dm",
- "url": "https://github.com/ntveem/sterile-dm",
- "rel": "/software/repository/github/ntveem/sterile-dm",
- "avatar": "https://avatars.githubusercontent.com/u/9044666?v=4",
- "description": "A program to follow the production of sterile neutrino dark matter",
- "topics": []
- },
- {
- "uid": "github/marius311/pypico",
- "url": "https://github.com/marius311/pypico",
- "rel": "/software/repository/github/marius311/pypico",
- "avatar": "https://avatars.githubusercontent.com/u/1510968?v=4",
- "description": "Quickly compute the CMB powerspectra and matter transfer functions.",
- "topics": []
+ "uid": "github/pyro-ppl/pyro",
+ "url": "https://github.com/pyro-ppl/pyro",
+ "rel": "/software/repository/github/pyro-ppl/pyro",
+ "avatar": "https://avatars.githubusercontent.com/u/46794900?v=4",
+ "description": "Deep universal probabilistic programming with Python and PyTorch",
+ "topics": [
+ "python",
+ "pytorch",
+ "machine-learning",
+ "bayesian",
+ "probabilistic-programming",
+ "bayesian-inference",
+ "variational-inference",
+ "probabilistic-modeling",
+ "deep-learning"
+ ]
},
{
"uid": "github/marius311/cosmoslik",
@@ -18533,18691 +18402,19502 @@
]
},
{
- "uid": "github/LMJL-Alea/ktest",
- "url": "https://github.com/LMJL-Alea/ktest",
- "rel": "/software/repository/github/LMJL-Alea/ktest",
- "avatar": "https://avatars.githubusercontent.com/u/85163893?v=4",
- "description": null,
+ "uid": "github/marius311/pypico",
+ "url": "https://github.com/marius311/pypico",
+ "rel": "/software/repository/github/marius311/pypico",
+ "avatar": "https://avatars.githubusercontent.com/u/1510968?v=4",
+ "description": "Quickly compute the CMB powerspectra and matter transfer functions.",
"topics": []
},
{
- "uid": "github/SimonPfeifer/cows",
- "url": "https://github.com/SimonPfeifer/cows",
- "rel": "/software/repository/github/SimonPfeifer/cows",
- "avatar": "https://avatars.githubusercontent.com/u/32218575?v=4",
- "description": null,
+ "uid": "github/MBoemo/DNAscent",
+ "url": "https://github.com/MBoemo/DNAscent",
+ "rel": "/software/repository/github/MBoemo/DNAscent",
+ "avatar": "https://avatars.githubusercontent.com/u/3235705?v=4",
+ "description": "Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.",
"topics": []
},
{
- "uid": "github/dmitryduev/penquins",
- "url": "https://github.com/dmitryduev/penquins",
- "rel": "/software/repository/github/dmitryduev/penquins",
- "avatar": "https://avatars.githubusercontent.com/u/7557205?v=4",
- "description": "A python client for Kowalski",
- "topics": [
- "kowalski",
- "python-client",
- "ztf",
- "ztf-ii"
- ]
+ "uid": "github/pcingola/SnpEff",
+ "url": "https://github.com/pcingola/SnpEff",
+ "rel": "/software/repository/github/pcingola/SnpEff",
+ "avatar": "https://avatars.githubusercontent.com/u/1334427?v=4",
+ "description": "genetic variant annotation and effect prediction toolbox - tool",
+ "topics": []
},
{
- "uid": "github/dmitryduev/tails",
- "url": "https://github.com/dmitryduev/tails",
- "rel": "/software/repository/github/dmitryduev/tails",
- "avatar": "https://avatars.githubusercontent.com/u/7557205?v=4",
- "description": "Tails: chasing comets with ZTF and deep learning",
+ "uid": "github/kateharborne/SimSpin",
+ "url": "https://github.com/kateharborne/SimSpin",
+ "rel": "/software/repository/github/kateharborne/SimSpin",
+ "avatar": "https://avatars.githubusercontent.com/u/29746421?v=4",
+ "description": "SimSpin - A package for the kinematic analysis of galaxy simulations",
"topics": [
- "tails",
- "deep-learning",
- "comets",
- "ztf",
- "ztf-ii",
- "astronomy",
- "solar-system"
+ "simulation",
+ "ifs",
+ "kinematics",
+ "galaxies"
]
},
{
- "uid": "github/dmitryduev/braai",
- "url": "https://github.com/dmitryduev/braai",
- "rel": "/software/repository/github/dmitryduev/braai",
- "avatar": "https://avatars.githubusercontent.com/u/7557205?v=4",
- "description": "braai [Bogus/Real Adversarial AI]: Real-bogus astrophysical event classification for the Zwicky Transient Facility (ZTF) using deep learning",
+ "uid": "github/lifs-tools/goslin",
+ "url": "https://github.com/lifs-tools/goslin",
+ "rel": "/software/repository/github/lifs-tools/goslin",
+ "avatar": "https://avatars.githubusercontent.com/u/43466647?v=4",
+ "description": "Goslin is the Grammar on succinct lipid nomenclature.",
"topics": [
- "deep-learning",
- "astronomy",
- "ztf"
+ "parsing",
+ "nomenclature",
+ "grammar",
+ "metabolomics",
+ "mass-spectrometry",
+ "lipid",
+ "lipidomics"
]
},
{
- "uid": "github/lemene/PECAT",
- "url": "https://github.com/lemene/PECAT",
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- "description": "PECAT, a phased error correct and assembly tool",
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+ "avatar": "https://avatars1.githubusercontent.com/u/43466647?v=4",
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- "description": "Kernel Tuner",
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+ "rel": "/software/repository/github/cy-xu/cosmic-conn",
+ "avatar": "https://avatars.githubusercontent.com/u/24612082?v=4",
+ "description": "Cosmic-CoNN: A Cosmic Ray Detection Deep-Learning Framework, Dataset, and Toolkit",
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- "kernel-tuner",
- "cuda-kernels",
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- "cplusplus",
- "autotuning",
- "auto-tuning",
- "gpu-computing",
- "testing",
- "software-development",
- "optimization",
- "machine-learning"
+ "astronomy-data-reduction",
+ "cosmic-rays",
+ "ccd-observation",
+ "neural-networks",
+ "classification",
+ "deep-learning",
+ "convolutional-neural-networks"
]
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- "description": "Expanding Networks by Querying Unexpectedly Inter-Related Entities",
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+ "avatar": "https://avatars.githubusercontent.com/u/7642366?v=4",
+ "description": "Nanopore DRS read simulator",
"topics": []
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+ "rel": "/software/repository/github/bartongroup/RoSA",
+ "avatar": "https://avatars.githubusercontent.com/u/7642366?v=4",
+ "description": "Antisense analysis scripts",
"topics": []
},
{
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- "avatar": "https://avatars.githubusercontent.com/u/16046310?v=4",
- "description": "Assembled Genomes Compressor",
+ "uid": "github/cersonsky-lab/AniSOAP",
+ "url": "https://github.com/cersonsky-lab/AniSOAP",
+ "rel": "/software/repository/github/cersonsky-lab/AniSOAP",
+ "avatar": "https://avatars.githubusercontent.com/u/114077954?v=4",
+ "description": "Library for computing anisotropy extension to SOAP descriptors",
"topics": []
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- "url": "https://github.com/ydLiu-HIT/deSALT",
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- "description": "deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads",
+ "uid": "github/kiyo-masui/bitshuffle",
+ "url": "https://github.com/kiyo-masui/bitshuffle",
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+ "avatar": "https://avatars.githubusercontent.com/u/399263?v=4",
+ "description": "Filter for improving compression of typed binary data.",
"topics": []
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{
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+ "uid": "github/statistical-thinking/KI.ENNA",
+ "url": "https://github.com/statistical-thinking/KI.ENNA",
+ "rel": "/software/repository/github/statistical-thinking/KI.ENNA",
+ "avatar": "https://avatars.githubusercontent.com/u/20285492?v=4",
+ "description": "KI-ENNA: (E)in (N)euronales (N)etz zum (A)usprobieren / AI-ANNE: (A) (N)eural (N)et for (E)xploration",
"topics": []
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- "set",
- "set-theory",
- "conversion",
- "compression",
- "toolkit",
- "parallel",
- "pipeline",
- "bioinformatics"
- ]
+ "uid": "github/ConnorStoneAstro/AutoProf",
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+ "rel": "/software/repository/github/ConnorStoneAstro/AutoProf",
+ "avatar": "https://avatars.githubusercontent.com/u/78555321?v=4",
+ "description": "Automatic Isophotal solutions for galaxy images",
+ "topics": []
},
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- "rel": "/software/repository/github/baoxingsong/AnchorWave",
- "avatar": "https://avatars.githubusercontent.com/u/18551962?v=4",
- "description": "Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation",
+ "uid": "github/Mihart-web/CARBONETTE",
+ "url": "https://github.com/Mihart-web/CARBONETTE",
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+ "avatar": "https://avatars.githubusercontent.com/u/80395512?v=4",
+ "description": "CARBONETTE PIPELINE \u2014 INTERPRETATION GUIDE",
"topics": [
- "genome",
- "genome-alignment"
+ "cnt",
+ "engine",
+ "hnt",
+ "spectral-analysis",
+ "spectral-data",
+ "spectral-methods"
]
},
{
- "uid": "github/AshleySpindler/AstroVaDEr-Public",
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+ "uid": "github/cmillion/gPhoton",
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+ "avatar": "https://avatars.githubusercontent.com/u/1483210?v=4",
+ "description": "The GALEX photon database and tools project.",
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- "topics": [
- "cran",
- "mrs",
- "spectroscopy",
- "mri",
- "brain",
- "mrshub"
- ]
+ "uid": "github/thomasdenecker/START-R",
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+ "rel": "/software/repository/github/thomasdenecker/START-R",
+ "avatar": "https://avatars2.githubusercontent.com/u/21334113?v=4",
+ "description": "Simple Tool for Analysis of Replication Timing with R",
+ "topics": []
},
{
- "uid": "github/single-cell-genetics/cellsnp-lite",
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- "description": "Efficient genotyping bi-allelic SNPs on single cells",
- "topics": [
- "single-cell",
- "genetic-variants",
- "genotyping"
- ]
+ "uid": "github/UK-Digital-Heart-Project/4Dsurvival",
+ "url": "https://github.com/UK-Digital-Heart-Project/4Dsurvival",
+ "rel": "/software/repository/github/UK-Digital-Heart-Project/4Dsurvival",
+ "avatar": "https://avatars.githubusercontent.com/u/13782814?v=4",
+ "description": "Deep learning cardiac motion analysis for survival prediction",
+ "topics": []
},
{
- "uid": "github/single-cell-genetics/vireo",
- "url": "https://github.com/single-cell-genetics/vireo",
- "rel": "/software/repository/github/single-cell-genetics/vireo",
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- "description": "Demultiplexing pooled scRNA-seq data with or without genotype reference",
- "topics": [
- "single-cells",
- "scrna-seq",
- "demultiplex",
- "donor-deconvolution",
- "variational-inference"
- ]
+ "uid": "github/UK-Digital-Heart-Project/4Dsegment",
+ "url": "https://github.com/UK-Digital-Heart-Project/4Dsegment",
+ "rel": "/software/repository/github/UK-Digital-Heart-Project/4Dsegment",
+ "avatar": "https://avatars.githubusercontent.com/u/13782814?v=4",
+ "description": null,
+ "topics": []
},
{
- "uid": "github/szymon-datalions/pyinterpolate",
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- "avatar": "https://avatars.githubusercontent.com/u/84904952?v=4",
- "description": "Package with spatial analysis and spatial prediction tools",
+ "uid": "github/silx-kit/pyFAI",
+ "url": "https://github.com/silx-kit/pyFAI",
+ "rel": "/software/repository/github/silx-kit/pyFAI",
+ "avatar": "https://avatars.githubusercontent.com/u/14869885?v=4",
+ "description": "Fast Azimuthal Integration in Python",
"topics": [
- "kriging",
- "semivariogram",
- "spatial-interpolation",
- "spatial-analysis",
- "poisson-kriging",
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"python",
- "machine-learning"
- ]
- },
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- "description": "Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data",
- "topics": [
- "drug-resistance",
- "tb-profiler"
+ "diffraction",
+ "science"
]
},
{
- "uid": "github/jodyphelan/tb-ml",
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- "rel": "/software/repository/github/jodyphelan/tb-ml",
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- "description": "A simple tool for creating machine learning antimicrobial resistance prediction pipelines using Docker containers for M. tuberculosis",
- "topics": [
- "amr",
- "ml"
- ]
+ "uid": "github/IMS-MAXIMS/openMAXIMS",
+ "url": "https://github.com/IMS-MAXIMS/openMAXIMS",
+ "rel": "/software/repository/github/IMS-MAXIMS/openMAXIMS",
+ "avatar": "https://avatars.githubusercontent.com/u/7870089?v=4",
+ "description": "Home of the openMAXIMS PAS and EPR",
+ "topics": []
},
{
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- "url": "https://github.com/ctkelley/MultiPrecisionArrays.jl",
- "rel": "/software/repository/github/ctkelley/MultiPrecisionArrays.jl",
- "avatar": "https://avatars.githubusercontent.com/u/10243067?v=4",
- "description": "Mulitprecision Arrays",
+ "uid": "github/merenlab/anvio",
+ "url": "https://github.com/merenlab/anvio",
+ "rel": "/software/repository/github/merenlab/anvio",
+ "avatar": "https://avatars.githubusercontent.com/u/22106511?v=4",
+ "description": "An analysis and visualization platform for 'omics data",
"topics": [
- "iterative-methods",
- "iterative-refinement",
- "linear-solvers",
- "multiprecision"
+ "metagenomics",
+ "metatranscriptomics",
+ "pangenomics",
+ "comparative-genomics",
+ "science",
+ "visualization",
+ "bioinformatics",
+ "phylogenomics",
+ "population-genetics",
+ "python",
+ "javascript",
+ "anvio"
]
},
{
- "uid": "github/Libensemble/libensemble",
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- "topics": []
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- "description": "The Abundance Matching Box for the Epoch of Reionization (AMBER) is a semi-numerical code for modeling the cosmic dawn and reionization.",
+ "uid": "github/vterron/lemon",
+ "url": "https://github.com/vterron/lemon",
+ "rel": "/software/repository/github/vterron/lemon",
+ "avatar": "https://avatars.githubusercontent.com/u/1575425?v=4",
+ "description": "Differential photometry for humans (and astronomers)",
"topics": []
},
{
- "uid": "github/NLeSC/xenon-flow",
- "url": "https://github.com/xenon-middleware/xenon-flow",
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- "description": "Run CWL workflows using Xenon",
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- "avatar": "https://avatars.githubusercontent.com/u/1705862?v=4",
- "description": "Using the power of Python and Jupyter notebooks to automate analysis of scientific literature",
+ "uid": "github/kutaslab/fitgrid",
+ "url": "https://github.com/kutaslab/fitgrid",
+ "rel": "/software/repository/github/kutaslab/fitgrid",
+ "avatar": "https://avatars.githubusercontent.com/u/39499147?v=4",
+ "description": "Multichannel event-related time-series regression modeling for EEG, MEG, and sensor array data",
"topics": [
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- "literature-search",
- "literature-review-tool",
"python",
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- "systematic-reviews",
- "bibliographics",
- "bibliometric-analysis",
- "bibliometric-visualization",
- "bibliometrics",
- "scientometrics"
+ "eeg",
+ "regression"
]
},
{
- "uid": "github/NLeSC/ahn-pointcloud-viewer-ws",
- "url": "https://github.com/NLeSC/ahn-pointcloud-viewer-ws",
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- "description": "Webservice for ahn pointcloud viewer",
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- "topics": []
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- "topics": []
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- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": null,
+ "uid": "github/tbisbas/PDFchem",
+ "url": "https://github.com/tbisbas/PDFchem",
+ "rel": "/software/repository/github/tbisbas/PDFchem",
+ "avatar": "https://avatars.githubusercontent.com/u/26414918?v=4",
+ "description": "Estimate the average abundance of species from Av-PDFs",
"topics": []
},
{
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- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "Optimization and state estimation of dynamic models",
+ "uid": "github/alexrhowe/APOLLO",
+ "url": "https://github.com/alexrhowe/APOLLO",
+ "rel": "/software/repository/github/alexrhowe/APOLLO",
+ "avatar": "https://avatars.githubusercontent.com/u/53234440?v=4",
+ "description": "Atmosphere retrieval code for exoplanets",
"topics": []
},
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- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "Netherlands eScience Center - Shifting Concepts Through Time project",
+ "uid": "github/nservant/HiC-Pro",
+ "url": "https://github.com/nservant/HiC-Pro",
+ "rel": "/software/repository/github/nservant/HiC-Pro",
+ "avatar": "https://avatars.githubusercontent.com/u/10778219?v=4",
+ "description": "HiC-Pro: An optimized and flexible pipeline for Hi-C data processing",
"topics": []
},
{
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- "url": "https://github.com/NLeSC/noodles",
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- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "Computational workflow engine, making distributed computing in Python easy!",
+ "uid": "github/jamesaird/FAST",
+ "url": "https://github.com/jamesaird/FAST",
+ "rel": "/software/repository/github/jamesaird/FAST",
+ "avatar": "https://avatars.githubusercontent.com/u/1553912?v=4",
+ "description": "Fitting and Assessment of Synthetic Templates - an IDL-based code that fits stellar population synthesis templates to broadband photometry and/or spectra.",
"topics": []
},
{
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- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "A deep learning tool for time series classification",
- "topics": []
+ "uid": "github/jveitchmichaelis/pygadgetreader",
+ "url": "https://github.com/jveitchmichaelis/pygadgetreader",
+ "rel": "/software/repository/github/jveitchmichaelis/pygadgetreader",
+ "avatar": "https://avatars.githubusercontent.com/u/3159591?v=4",
+ "description": "A mirror of pygadgetreader because BItbucket stopped hosting Mercurial repos (and we needed it now!)",
+ "topics": [
+ "python",
+ "gadget",
+ "cosmology"
+ ]
},
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- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "Webservice for eEcology Annotation project.",
+ "uid": "github/selkamand/ggoncoplot",
+ "url": "https://github.com/selkamand/ggoncoplot",
+ "rel": "/software/repository/github/selkamand/ggoncoplot",
+ "avatar": "https://avatars.githubusercontent.com/u/73202525?v=4",
+ "description": "Easily Create Interactive Oncoplots",
"topics": []
},
{
- "uid": "github/NLeSC/lokum",
- "url": "https://github.com/NLeSC/lokum",
- "rel": "/software/repository/github/NLeSC/lokum",
- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "Deploy GlusterFS, Docker, Spark and JupyterHub services on bare-metal cluster.",
+ "uid": "github/acerbilab/pybads",
+ "url": "https://github.com/acerbilab/pybads",
+ "rel": "/software/repository/github/acerbilab/pybads",
+ "avatar": "https://avatars.githubusercontent.com/u/99487879?v=4",
+ "description": "PyBADS: Bayesian Adaptive Direct Search optimization algorithm for model fitting in Python",
"topics": [
- "apache-spark",
- "glusterfs",
- "jupyterhub",
- "cassandra",
- "dask"
+ "bayesian-optimization",
+ "log-likelihood",
+ "noiseless-functions",
+ "noisy-functions",
+ "optimization-algorithms",
+ "python"
]
},
{
- "uid": "github/NLeSC/docker-couch-admin",
- "url": "https://github.com/NLeSC/docker-couch-admin",
- "rel": "/software/repository/github/NLeSC/docker-couch-admin",
- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "Configures a web service using angular-schema-form and CouchDB",
+ "uid": "github/openmm/openmm",
+ "url": "https://github.com/openmm/openmm",
+ "rel": "/software/repository/github/openmm/openmm",
+ "avatar": "https://avatars.githubusercontent.com/u/52428936?v=4",
+ "description": "OpenMM is a toolkit for molecular simulation using high performance GPU code. ",
+ "topics": [
+ "simulation",
+ "molecular-dynamics"
+ ]
+ },
+ {
+ "uid": "github/ilikecubesnstuff/commensurability",
+ "url": "https://github.com/ilikecubesnstuff/commensurability",
+ "rel": "/software/repository/github/ilikecubesnstuff/commensurability",
+ "avatar": "https://avatars.githubusercontent.com/u/25328250?v=4",
+ "description": "Packages for calculating orbit commensurabilities.",
"topics": []
},
{
- "uid": "github/NLeSC/structure-from-motion",
- "url": "https://github.com/NLeSC/structure-from-motion",
- "rel": "/software/repository/github/NLeSC/structure-from-motion",
- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "Structure from Motion Pipeline",
+ "uid": "github/christophmschaefer/miluphcuda",
+ "url": "https://github.com/christophmschaefer/miluphcuda",
+ "rel": "/software/repository/github/christophmschaefer/miluphcuda",
+ "avatar": "https://avatars.githubusercontent.com/u/52719134?v=4",
+ "description": "smooth particle hydrodynamics code",
"topics": []
},
{
- "uid": "github/NLeSC/spot",
- "url": "https://github.com/NLeSC/spot",
- "rel": "/software/repository/github/NLeSC/spot",
- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "Try the demo",
+ "uid": "github/spm/spm",
+ "url": "https://github.com/spm/spm",
+ "rel": "/software/repository/github/spm/spm",
+ "avatar": "https://avatars.githubusercontent.com/u/14014701?v=4",
+ "description": "SPM (Statistical Parametric Mapping) - Development Version",
"topics": [
- "spot",
- "visualization",
- "crossfilter",
- "javascript",
- "cross-platform",
- "web-app"
+ "matlab",
+ "neuroscience",
+ "neuroimaging",
+ "spm",
+ "eeg",
+ "fmri",
+ "meg",
+ "pet",
+ "spect",
+ "mapping",
+ "parametric",
+ "statistical",
+ "opm",
+ "nifti",
+ "brain",
+ "dcm",
+ "vbm"
]
},
{
- "uid": "github/NLeSC/case-law-app",
- "url": "https://github.com/NLeSC/case-law-app",
- "rel": "/software/repository/github/NLeSC/case-law-app",
- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": null,
+ "uid": "github/BradGreig/21CMMC",
+ "url": "https://github.com/BradGreig/21CMMC",
+ "rel": "/software/repository/github/BradGreig/21CMMC",
+ "avatar": "https://avatars.githubusercontent.com/u/16087482?v=4",
+ "description": "A parallelised, Monte Carlo Markov Chain analysis tool for the epoch of reionisation (EoR)",
"topics": []
},
{
- "uid": "github/NLeSC/cptm",
- "url": "https://github.com/NLeSC/cptm",
- "rel": "/software/repository/github/NLeSC/cptm",
- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "Cross-Perspective Topic Modeling",
- "topics": []
+ "uid": "github/jtschindler/sculptor",
+ "url": "https://github.com/jtschindler/sculptor",
+ "rel": "/software/repository/github/jtschindler/sculptor",
+ "avatar": "https://avatars.githubusercontent.com/u/16090889?v=4",
+ "description": "Sculptor - Interactive modeling of (electromagnetic) astronomical spectra.",
+ "topics": [
+ "lmfit",
+ "gui",
+ "sculptor",
+ "astronomy",
+ "astrophysics",
+ "spectroscopy"
+ ]
},
{
- "uid": "github/NLeSC/OCTSegmentation",
- "url": "https://github.com/NLeSC/OCTSegmentation",
- "rel": "/software/repository/github/NLeSC/OCTSegmentation",
- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "EYR4-OCTSEG ",
+ "uid": "github/kd0kfo/cosmology",
+ "url": "https://github.com/kd0kfo/cosmology",
+ "rel": "/software/repository/github/kd0kfo/cosmology",
+ "avatar": "https://avatars.githubusercontent.com/u/2445911?v=4",
+ "description": "Applications to simulate gravitational lensing, through ray tracing and shear calculation. See http://research.davecoss.com for more details.",
"topics": []
},
{
- "uid": "github/NLeSC/xtas",
- "url": "https://github.com/NLeSC/xtas",
- "rel": "/software/repository/github/NLeSC/xtas",
- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "Distributed text analysis suite based on Celery",
+ "uid": "github/nyusngroup/pyMCZ",
+ "url": "https://github.com/nyusngroup/pyMCZ",
+ "rel": "/software/repository/github/nyusngroup/pyMCZ",
+ "avatar": "https://avatars.githubusercontent.com/u/8115653?v=4",
+ "description": "montecarlo sampling method to calculate metalicity from flux data",
"topics": []
},
{
- "uid": "github/NLeSC/osmium",
- "url": "https://github.com/xenon-middleware/osmium",
- "rel": "/software/repository/github/NLeSC/osmium",
- "avatar": "https://avatars0.githubusercontent.com/u/48052855?v=4",
- "description": "Xenon Job Webservice",
+ "uid": "github/cl3425/Clairvoyance",
+ "url": "https://github.com/cl3425/Clairvoyance",
+ "rel": "/software/repository/github/cl3425/Clairvoyance",
+ "avatar": "https://avatars.githubusercontent.com/u/16911363?v=4",
+ "description": "Predicting multiple-planet systems for TESS",
"topics": []
},
{
- "uid": "github/NLeSC/SalientDetector-python",
- "url": "https://github.com/NLeSC/SalientDetector-python",
- "rel": "/software/repository/github/NLeSC/SalientDetector-python",
- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "Python package for Large Scale Imaging research @ NLeSC",
+ "uid": "github/Professor-G/MicroLIA",
+ "url": "https://github.com/Professor-G/MicroLIA",
+ "rel": "/software/repository/github/Professor-G/MicroLIA",
+ "avatar": "https://avatars.githubusercontent.com/u/19847448?v=4",
+ "description": "Gravitational microlensing classification engine using machine learning.",
+ "topics": [
+ "microlensing",
+ "detection",
+ "algorithm",
+ "random-forest",
+ "machine-learning"
+ ]
+ },
+ {
+ "uid": "github/davidharvey1986/pyRRG",
+ "url": "https://github.com/davidharvey1986/pyRRG",
+ "rel": "/software/repository/github/davidharvey1986/pyRRG",
+ "avatar": "https://avatars.githubusercontent.com/u/2930696?v=4",
+ "description": "pyRRG weak lensing shape measurement code. Measuring the 2nd and 4th order moments it uses a TinyTim model to correct for PSF distortions. It is invariant to number exposures, ortientation of the drizzle images. Using a machine learning algorithm it automatically star and galaxy classifies, howeve the user is able to do this manually if not accurate enough. For more see https://arxiv.org/abs/astro-ph/9905090. For bugs please report them to https://github.com/davidharvey1986/pyRRG or contact harvey@lorentz.leidenuniv.nl",
"topics": []
},
{
- "uid": "github/NLeSC/DiVE",
- "url": "https://github.com/NLeSC/DiVE",
- "rel": "/software/repository/github/NLeSC/DiVE",
- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "An interactive 3D web viewer of up to million points on one screen that represent data. Provides interaction for viewing high-dimensional data that has been previously embedded in 3D or 2D. Based on graphosaurus.js and three.js. For a Linux release of a complete embedding+visualization pipeline please visit https://github.com/sonjageorgievska/Embed-Dive.",
+ "uid": "github/shandley/hecatomb",
+ "url": "https://github.com/shandley/hecatomb",
+ "rel": "/software/repository/github/shandley/hecatomb",
+ "avatar": "https://avatars.githubusercontent.com/u/660111?v=4",
+ "description": "hecatomb is a virome analysis pipeline for analysis of Illumina sequence data",
"topics": [
- "interactive-visualizations",
- "3d-data",
- "embedded-data",
- "web-application",
- "manifold-learning",
- "non-linear-dimensionality-reduction",
- "high-dimensional-data"
+ "virome",
+ "viral-metagenomes",
+ "snakemake"
]
},
{
- "uid": "github/NLeSC/compressing-the-sky",
- "url": "https://github.com/NLeSC/compressing-the-sky",
- "rel": "/software/repository/github/NLeSC/compressing-the-sky",
- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "Compressing the Sky project with CWI DA",
+ "uid": "github/nitadori/SCF-FDPS",
+ "url": "https://github.com/nitadori/SCF-FDPS",
+ "rel": "/software/repository/github/nitadori/SCF-FDPS",
+ "avatar": "https://avatars.githubusercontent.com/u/4830914?v=4",
+ "description": null,
"topics": []
},
{
- "uid": "github/NLeSC/nlesc-serverless-boilerplate",
- "url": "https://github.com/NLeSC/nlesc-serverless-boilerplate",
- "rel": "/software/repository/github/NLeSC/nlesc-serverless-boilerplate",
- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "An AWS amplify boilerplate web application",
+ "uid": "github/FiorenSt/ASTA",
+ "url": "https://github.com/FiorenSt/ASTA",
+ "rel": "/software/repository/github/FiorenSt/ASTA",
+ "avatar": "https://avatars.githubusercontent.com/u/96529703?v=4",
+ "description": "Satellites detection in astronomical images",
"topics": []
},
{
- "uid": "github/NLeSC/baklava",
- "url": "https://github.com/NLeSC/baklava",
- "rel": "/software/repository/github/NLeSC/baklava",
- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "Deploy a Kubernetes cluster and big data services on the cloud.",
- "topics": [
- "kubernetes",
- "kubernetes-deployment",
- "opennebula",
- "ansible",
- "terraform",
- "kubespray",
- "glusterfs"
- ]
+ "uid": "github/FiorenSt/ConTEST",
+ "url": "https://github.com/FiorenSt/ConTEST",
+ "rel": "/software/repository/github/FiorenSt/ConTEST",
+ "avatar": "https://avatars.githubusercontent.com/u/96529703?v=4",
+ "description": "Nonparametric consistency test between observations and astrophysical models",
+ "topics": []
},
{
- "uid": "github/NLeSC/python-template",
- "url": "https://github.com/NLeSC/python-template",
- "rel": "/software/repository/github/NLeSC/python-template",
- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "Netherlands eScience Center Python Template",
- "topics": [
- "cookiecutter",
- "python"
- ]
+ "uid": "github/FiorenSt/FINKER",
+ "url": "https://github.com/FiorenSt/FINKER",
+ "rel": "/software/repository/github/FiorenSt/FINKER",
+ "avatar": "https://avatars.githubusercontent.com/u/96529703?v=4",
+ "description": "Frequency Identification with KErnel Regression - A universal approach to optimal frequency identification using nonparametric kernel regression for an accurate estimation",
+ "topics": []
},
{
- "uid": "github/NLeSC/pattyvis",
- "url": "https://github.com/NLeSC/PattyVis",
- "rel": "/software/repository/github/NLeSC/pattyvis",
- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "Webgl pointcloud visualization of the Via Appia based on potree",
+ "uid": "github/FiorenSt/AutoSourceID-Light",
+ "url": "https://github.com/FiorenSt/AutoSourceID-Light",
+ "rel": "/software/repository/github/FiorenSt/AutoSourceID-Light",
+ "avatar": "https://avatars.githubusercontent.com/u/96529703?v=4",
+ "description": null,
"topics": []
},
{
- "uid": "github/NLeSC/ExtJS-DateTime",
- "url": "https://github.com/NLeSC/ExtJS-DateTime",
- "rel": "/software/repository/github/NLeSC/ExtJS-DateTime",
- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "DateTime input field for Ext JS",
+ "uid": "github/jobovy/stream-stream",
+ "url": "https://github.com/jobovy/stream-stream",
+ "rel": "/software/repository/github/jobovy/stream-stream",
+ "avatar": "https://avatars.githubusercontent.com/u/1044876?v=4",
+ "description": "Investigation of the interaction between stellar and dark-matter streams",
"topics": []
},
{
- "uid": "github/NLeSC/UncertaintyVisualization",
- "url": "https://github.com/NLeSC/UncertaintyVisualization",
- "rel": "/software/repository/github/NLeSC/UncertaintyVisualization",
- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": null,
+ "uid": "github/jobovy/simple-m2m",
+ "url": "https://github.com/jobovy/simple-m2m",
+ "rel": "/software/repository/github/jobovy/simple-m2m",
+ "avatar": "https://avatars.githubusercontent.com/u/1044876?v=4",
+ "description": "Simple M2M setup to explore some new ideas",
"topics": []
},
{
- "uid": "github/NLeSC/eEcology-Classification",
- "url": "https://github.com/NLeSC/eEcology-Classification",
- "rel": "/software/repository/github/NLeSC/eEcology-Classification",
- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "Classification tool",
- "topics": []
+ "uid": "github/jobovy/galpy",
+ "url": "https://github.com/jobovy/galpy",
+ "rel": "/software/repository/github/jobovy/galpy",
+ "avatar": "https://avatars.githubusercontent.com/u/1044876?v=4",
+ "description": "Galactic Dynamics in python",
+ "topics": [
+ "astrophysics",
+ "astronomy",
+ "python",
+ "dynamics",
+ "scientific-computing",
+ "physics",
+ "astropy-affiliated"
+ ]
},
{
- "uid": "github/NLeSC/MAGMa",
- "url": "https://github.com/NLeSC/MAGMa",
- "rel": "/software/repository/github/NLeSC/MAGMa",
- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "eMetabolomics project: Mass Annotation based on in silico Generated Metabolites",
+ "uid": "github/jobovy/gaia_tools",
+ "url": "https://github.com/jobovy/gaia_tools",
+ "rel": "/software/repository/github/jobovy/gaia_tools",
+ "avatar": "https://avatars.githubusercontent.com/u/1044876?v=4",
+ "description": "Tools for working with the @ESAGaia data and related data sets",
+ "topics": [
+ "astrophysics",
+ "astronomy",
+ "gaia",
+ "python"
+ ]
+ },
+ {
+ "uid": "github/jobovy/streamgap-pepper",
+ "url": "https://github.com/jobovy/streamgap-pepper",
+ "rel": "/software/repository/github/jobovy/streamgap-pepper",
+ "avatar": "https://avatars.githubusercontent.com/u/1044876?v=4",
+ "description": "Code exploring the effect of peppering of streams with many small impacts",
"topics": []
},
{
- "uid": "github/NLeSC/PattyAnalytics",
- "url": "https://github.com/NLeSC/PattyAnalytics",
- "rel": "/software/repository/github/NLeSC/PattyAnalytics",
- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "Reusable point cloud analytics software. Includes segmentation, registration, file format conversion. ",
+ "uid": "github/jobovy/segueSelect",
+ "url": "https://github.com/jobovy/segueSelect",
+ "rel": "/software/repository/github/jobovy/segueSelect",
+ "avatar": "https://avatars.githubusercontent.com/u/1044876?v=4",
+ "description": "Selection function for the SDSS/SEGUE survey (G and K star samples)",
"topics": []
},
{
- "uid": "github/NLeSC/fairdatapoint",
- "url": "https://github.com/NLeSC/fairdatapoint",
- "rel": "/software/repository/github/NLeSC/fairdatapoint",
- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "Provide machine-readable descriptions of your data assets",
+ "uid": "github/jobovy/apogee",
+ "url": "https://github.com/jobovy/apogee",
+ "rel": "/software/repository/github/jobovy/apogee",
+ "avatar": "https://avatars.githubusercontent.com/u/1044876?v=4",
+ "description": "Tools for dealing with APOGEE data",
"topics": [
- "fair-data",
- "metadata",
- "dataset-interface",
- "restful-api",
- "rdf",
- "dcat",
- "dcmi"
+ "astrophysics",
+ "python",
+ "spectroscopy",
+ "data",
+ "data-analysis",
+ "astronomy"
]
},
{
- "uid": "github/NLeSC/python-pcl",
- "url": "https://github.com/NLeSC/python-pcl",
- "rel": "/software/repository/github/NLeSC/python-pcl",
- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "Python bindings to the pointcloud library (pcl)",
- "topics": []
+ "uid": "github/jobovy/extreme-deconvolution",
+ "url": "https://github.com/jobovy/extreme-deconvolution",
+ "rel": "/software/repository/github/jobovy/extreme-deconvolution",
+ "avatar": "https://avatars.githubusercontent.com/u/1044876?v=4",
+ "description": "Density estimation using Gaussian mixtures in the presence of noisy, heterogeneous and incomplete data",
+ "topics": [
+ "density-estimation",
+ "machine-learning",
+ "gaussian-mixture-models",
+ "python",
+ "c",
+ "uncertainty"
+ ]
},
{
- "uid": "github/NLeSC/hadrianus-scripts",
- "url": "https://github.com/NLeSC/hadrianus-scripts",
- "rel": "/software/repository/github/NLeSC/hadrianus-scripts",
- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "Scripts used for the Hadrianus project",
+ "uid": "github/vojtech-sidorin/quickclump",
+ "url": "https://github.com/vojtech-sidorin/quickclump",
+ "rel": "/software/repository/github/vojtech-sidorin/quickclump",
+ "avatar": "https://avatars.githubusercontent.com/u/10384347?v=4",
+ "description": "Identify clumps within a 3D FITS datacube.",
"topics": []
},
{
- "uid": "github/NLeSC/Massive-PotreeConverter",
- "url": "https://github.com/NLeSC/Massive-PotreeConverter",
- "rel": "/software/repository/github/NLeSC/Massive-PotreeConverter",
- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "Convert massive pointcloud, for example ahn2 (640 Billion points) to potree format.",
- "topics": []
+ "uid": "github/EhsanGharibNezhad/TelescopeML",
+ "url": "https://github.com/EhsanGharibNezhad/TelescopeML",
+ "rel": "/software/repository/github/EhsanGharibNezhad/TelescopeML",
+ "avatar": "https://avatars.githubusercontent.com/u/22139918?v=4",
+ "description": "Deep Convolutional Neural Networks and Machine Learning Models for Analyzing Stellar and Exoplanetary Telescope Spectra",
+ "topics": [
+ "astronomy",
+ "atmospheric-modelling",
+ "convolutional-neural-networks",
+ "machine-learning",
+ "star",
+ "telescope"
+ ]
},
{
- "uid": "github/NLeSC/EEG-epilepsy-diagnosis",
- "url": "https://github.com/NLeSC/EEG-epilepsy-diagnosis",
- "rel": "/software/repository/github/NLeSC/EEG-epilepsy-diagnosis",
- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "Detection of Epilepsy from EEG data (14 channel x 5 minutes)",
+ "uid": "github/Lindt8/PHITS-Tools",
+ "url": "https://github.com/Lindt8/PHITS-Tools",
+ "rel": "/software/repository/github/Lindt8/PHITS-Tools",
+ "avatar": "https://avatars.githubusercontent.com/u/7330668?v=4",
+ "description": "Python package for parsing and post-processing output from the PHITS code ",
"topics": []
},
{
- "uid": "github/NLeSC/root-conda-recipes",
- "url": "https://github.com/NLeSC/root-conda-recipes",
- "rel": "/software/repository/github/NLeSC/root-conda-recipes",
- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "Conda recipes for building ROOT 5 and ROOT 6 binaries, root_numpy, rootpy, root_pandas, with both Python 2 and Python 3 support.",
+ "uid": "github/FabioRigamonti/pyADfit",
+ "url": "https://github.com/FabioRigamonti/pyADfit",
+ "rel": "/software/repository/github/FabioRigamonti/pyADfit",
+ "avatar": "https://avatars.githubusercontent.com/u/65313023?v=4",
+ "description": "A nested sampling approach to QSO accretion disc fitting.",
"topics": []
},
{
- "uid": "github/NLeSC/eEcology-SMS-reciever",
- "url": "https://github.com/NLeSC/eEcology-SMS-reciever",
- "rel": "/software/repository/github/NLeSC/eEcology-SMS-reciever",
- "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
- "description": "Webservice to store SMS messages into a database table",
+ "uid": "github/jgrembi/riskCommunicator",
+ "url": "https://github.com/jgrembi/riskCommunicator",
+ "rel": "/software/repository/github/jgrembi/riskCommunicator",
+ "avatar": "https://avatars.githubusercontent.com/u/7432315?v=4",
+ "description": "An R package for estimating risk differences and relative risk measures",
"topics": []
},
{
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+ "simulation-based-inference",
+ "likelihood-free-inference",
"bayesian-inference",
- "bayesian-statistics",
- "kruschke",
- "probabilistic-programming",
- "python",
- "statistics"
+ "parameter-estimation",
+ "pytorch",
+ "machine-learning"
]
},
{
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- "bioinformatics",
- "bioinformatics-pipeline",
- "bioinformatics-tool",
- "gpcr",
- "homology-modeling",
- "molecular-docking"
- ]
+ "uid": "github/gymreklab/chips",
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+ "rel": "/software/repository/github/gymreklab/chips",
+ "avatar": "https://avatars.githubusercontent.com/u/19779699?v=4",
+ "description": "Simulation tool for ChIP- and other -seq experiments",
+ "topics": []
},
{
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- "url": "https://github.com/fjankowsk/fitpdf",
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- "avatar": "https://avatars.githubusercontent.com/u/10989149?v=4",
- "description": "Bayesian distribution fitting for pulsar and FRB data.",
+ "uid": "github/gymreklab/GangSTR",
+ "url": "https://github.com/gymreklab/GangSTR",
+ "rel": "/software/repository/github/gymreklab/GangSTR",
+ "avatar": "https://avatars.githubusercontent.com/u/19779699?v=4",
+ "description": "A tool for profiling long STRs from short reads",
+ "topics": []
+ },
+ {
+ "uid": "github/davidpagnon/Sports2D",
+ "url": "https://github.com/davidpagnon/Sports2D",
+ "rel": "/software/repository/github/davidpagnon/Sports2D",
+ "avatar": "https://avatars.githubusercontent.com/u/54667644?v=4",
+ "description": "Compute 2D human pose and angles from a video or a webcam. ",
"topics": [
- "astrophysics",
- "data-analysis",
- "distributions",
- "fast-radio-bursts",
- "fitting",
- "fitting-distributions",
- "pulsars",
- "python"
+ "biomechanics",
+ "blazepose",
+ "joint-angles",
+ "kinematics",
+ "markerless",
+ "openpose",
+ "sports-analytics",
+ "kinovea",
+ "pose-estimation",
+ "rtmpose"
]
},
{
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- "avatar": "https://avatars.githubusercontent.com/u/10989149?v=4",
- "description": "Scattering fits of Fast Radio Burst and pulsar data.",
+ "uid": "github/unibe-icelab/thz-image-explorer",
+ "url": "https://github.com/unibe-icelab/thz-image-explorer",
+ "rel": "/software/repository/github/unibe-icelab/thz-image-explorer",
+ "avatar": "https://avatars.githubusercontent.com/u/193905551?v=4",
+ "description": "THz Image Explorer is an application for THz time-domain image analysis.",
"topics": [
- "astronomy",
- "astrophysics",
- "fastradiobursts",
- "pulsars",
- "ionised-media",
- "radio-astronomy"
+ "analysis",
+ "rust",
+ "thz",
+ "thz-tds"
]
},
{
- "uid": "github/jonotuke/BREADR",
- "url": "https://github.com/jonotuke/BREADR",
- "rel": "/software/repository/github/jonotuke/BREADR",
- "avatar": "https://avatars.githubusercontent.com/u/1281470?v=4",
+ "uid": "github/zhoulinumass/ML-wPBE",
+ "url": "https://github.com/zhoulinumass/ML-wPBE",
+ "rel": "/software/repository/github/zhoulinumass/ML-wPBE",
+ "avatar": "https://avatars.githubusercontent.com/u/42041864?v=4",
"description": null,
"topics": []
},
{
- "uid": "github/SoFiA-Admin/SoFiA-2",
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- "description": "Version 2 of the HI Source Finding Application (SoFiA)",
- "topics": [
- "astronomy",
- "radioastronomy",
- "radio-astronomy",
- "source-finding",
- "parameterization",
- "source-finder"
- ]
+ "uid": "github/shadden/celmech",
+ "url": "https://github.com/shadden/celmech",
+ "rel": "/software/repository/github/shadden/celmech",
+ "avatar": "https://avatars.githubusercontent.com/u/1007148?v=4",
+ "description": "Sandbox for celestial mechanics calculations",
+ "topics": []
},
{
- "uid": "github/zqfang/gseapy",
- "url": "https://github.com/zqfang/GSEApy",
- "rel": "/software/repository/github/zqfang/gseapy",
- "avatar": "https://avatars.githubusercontent.com/u/5889336?v=4",
- "description": "Gene Set Enrichment Analysis in Python",
+ "uid": "github/shirtsgroup/physical_validation",
+ "url": "https://github.com/shirtsgroup/physical_validation",
+ "rel": "/software/repository/github/shirtsgroup/physical_validation",
+ "avatar": "https://avatars.githubusercontent.com/u/6166660?v=4",
+ "description": "Physical validation of molecular simulations",
"topics": [
- "gsea",
- "enrichment-analysis",
- "python3",
- "rust"
+ "physical-validation",
+ "molecular-simulation",
+ "molecular-dynamics",
+ "molecular-mechanics",
+ "python"
]
},
{
- "uid": "github/mlpack/mlpack",
- "url": "https://github.com/mlpack/mlpack",
- "rel": "/software/repository/github/mlpack/mlpack",
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- "description": "mlpack: a scalable C++ machine learning library -- ",
- "topics": [
- "machine-learning-library",
- "c-plus-plus",
- "deep-learning",
- "nearest-neighbor-search",
- "regression",
- "machine-learning"
- ]
+ "uid": "github/aroffringa/aartfaac2ms",
+ "url": "https://github.com/aroffringa/aartfaac2ms",
+ "rel": "/software/repository/github/aroffringa/aartfaac2ms",
+ "avatar": "https://avatars.githubusercontent.com/u/11645549?v=4",
+ "description": "Converts Aartfaac correlator files to measurement sets",
+ "topics": []
},
{
- "uid": "github/alexandercoulter/fastfrechet",
- "url": "https://github.com/alexandercoulter/fastfrechet",
- "rel": "/software/repository/github/alexandercoulter/fastfrechet",
- "avatar": "https://avatars.githubusercontent.com/u/67101356?v=4",
- "description": null,
+ "uid": "github/hosseintd/INOOR",
+ "url": "https://github.com/hosseintd/INOOR",
+ "rel": "/software/repository/github/hosseintd/INOOR",
+ "avatar": "https://avatars.githubusercontent.com/u/78230060?v=4",
+ "description": "This is a python based GUI for working with Iranian National Observatory Optical data",
"topics": []
},
{
- "uid": "github/muctadir/lama",
- "url": "https://github.com/muctadir/lama",
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- "description": "LaMa, short for Labelling Machine, is an web application developed for aiding in thematic analysis of qualitative data. ",
- "topics": [
- "angular",
- "docker",
- "python",
- "qualitative-research",
- "thematic-analysis",
- "qualitative-analysis",
- "text-labeling"
- ]
+ "uid": "github/domeckert/xmm_simulator",
+ "url": "https://github.com/domeckert/xmm_simulator",
+ "rel": "/software/repository/github/domeckert/xmm_simulator",
+ "avatar": "https://avatars.githubusercontent.com/u/47885645?v=4",
+ "description": "Python class to generate mock XMM-Newton spectra and images from 3D cubes extracted from hydro simulations",
+ "topics": []
+ },
+ {
+ "uid": "github/domeckert/hydromass",
+ "url": "https://github.com/domeckert/hydromass",
+ "rel": "/software/repository/github/domeckert/hydromass",
+ "avatar": "https://avatars.githubusercontent.com/u/47885645?v=4",
+ "description": "Hydrostatic mass profile reconstruction using X-ray and/or Sunyaev-Zeldovich data",
+ "topics": []
+ },
+ {
+ "uid": "github/domeckert/pyproffit",
+ "url": "https://github.com/domeckert/pyproffit",
+ "rel": "/software/repository/github/domeckert/pyproffit",
+ "avatar": "https://avatars.githubusercontent.com/u/47885645?v=4",
+ "description": "Pyproffit is a Python code for the analysis of X-ray brightness profiles from clusters of galaxies",
+ "topics": []
},
{
- "uid": "github/adrientaudiere/MiscMetabar",
- "url": "https://github.com/adrientaudiere/MiscMetabar",
- "rel": "/software/repository/github/adrientaudiere/MiscMetabar",
- "avatar": "https://avatars.githubusercontent.com/u/6680165?v=4",
- "description": "R package MiscMetabar: Miscellaneous functions for metabarcoding analysis",
+ "uid": "github/jaimerzp/limberjack.jl",
+ "url": "https://github.com/JaimeRZP/LimberJack.jl",
+ "rel": "/software/repository/github/jaimerzp/limberjack.jl",
+ "avatar": "https://avatars.githubusercontent.com/u/39957598?v=4",
+ "description": "Auto-differentiable methods for Cosmology",
"topics": [
- "ecology",
- "metabarcoding",
- "ngs-analysis",
- "package",
- "r"
+ "auto-differentiation",
+ "cosmology"
]
},
{
- "uid": "github/segasai/rvspecfit",
- "url": "https://github.com/segasai/rvspecfit",
- "rel": "/software/repository/github/segasai/rvspecfit",
- "avatar": "https://avatars.githubusercontent.com/u/109513?v=4",
- "description": "Radial velocity and stellar parameter fitting code for large surveys",
+ "uid": "github/munich-quantum-toolkit/core",
+ "url": "https://github.com/munich-quantum-toolkit/core",
+ "rel": "/software/repository/github/munich-quantum-toolkit/core",
+ "avatar": "https://avatars.githubusercontent.com/u/177826161?v=4",
+ "description": "MQT Core - The Backbone of the Munich Quantum Toolkit",
"topics": [
- "astrophysics",
- "spectroscopy"
+ "quantum-computing",
+ "quantum-intermediate-representation",
+ "mqt",
+ "tum"
]
},
{
- "uid": "github/segasai/q3c",
- "url": "https://github.com/segasai/q3c",
- "rel": "/software/repository/github/segasai/q3c",
- "avatar": "https://avatars.githubusercontent.com/u/109513?v=4",
- "description": "PostgreSQL extension for spatial indexing on a sphere",
+ "uid": "github/galsci/pysm",
+ "url": "https://github.com/galsci/pysm",
+ "rel": "/software/repository/github/galsci/pysm",
+ "avatar": "https://avatars.githubusercontent.com/u/81497054?v=4",
+ "description": "PySM 3: Sky emission simulations for Cosmic Microwave Background experiments",
"topics": [
- "postgresql",
- "sphere",
- "astronomy",
- "nearest-neighbors",
- "query",
- "coordinates"
+ "cosmology",
+ "cosmic-microwave-background",
+ "healpix",
+ "healpy",
+ "python",
+ "mpi"
]
},
{
- "uid": "github/jkbonfield/io_lib",
- "url": "https://github.com/jkbonfield/io_lib",
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- "description": "Staden Package \"io_lib\" (sometimes referred to as libstaden-read by distributions). This contains code for reading and writing a variety of Bioinformatics / DNA Sequence formats.",
+ "uid": "github/PyPO-dev/PyPO",
+ "url": "https://github.com/PyPO-dev/PyPO",
+ "rel": "/software/repository/github/PyPO-dev/PyPO",
+ "avatar": "https://avatars.githubusercontent.com/u/133362839?v=4",
+ "description": "\ud83d\udce1 Open-source physical optics simulation package.",
"topics": []
},
{
- "uid": "github/jkbonfield/crumble",
- "url": "https://github.com/jkbonfield/crumble",
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- "avatar": "https://avatars.githubusercontent.com/u/2210525?v=4",
- "description": "controllable lossy compression of BAM/CRAM files.",
+ "uid": "github/wpb-astro/MCSED",
+ "url": "https://github.com/wpb-astro/MCSED",
+ "rel": "/software/repository/github/wpb-astro/MCSED",
+ "avatar": "https://avatars.githubusercontent.com/u/23195034?v=4",
+ "description": null,
"topics": []
},
{
- "uid": "github/jkbonfield/htscodecs",
- "url": "https://github.com/jkbonfield/htscodecs",
- "rel": "/software/repository/github/jkbonfield/htscodecs",
- "avatar": "https://avatars.githubusercontent.com/u/2210525?v=4",
- "description": "Custom compression for CRAM and others.",
+ "uid": "github/afeinstein20/eleanor",
+ "url": "https://github.com/afeinstein20/eleanor",
+ "rel": "/software/repository/github/afeinstein20/eleanor",
+ "avatar": "https://avatars.githubusercontent.com/u/5041100?v=4",
+ "description": "A tool for light curve extraction from the TESS FFIs.",
"topics": []
},
{
- "uid": "github/lzkelley/kalepy",
- "url": "https://github.com/lzkelley/kalepy",
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- "description": "Kernel Density Estimation and (re)sampling",
- "topics": [
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- "python3",
- "statistics",
- "kde",
- "kernel-density-estimation",
- "statistical-analysis",
- "resampling",
- "pdfs",
- "resample"
- ]
+ "uid": "github/afeinstein20/stella",
+ "url": "https://github.com/afeinstein20/stella",
+ "rel": "/software/repository/github/afeinstein20/stella",
+ "avatar": "https://avatars3.githubusercontent.com/u/5041100?v=4",
+ "description": "For characterizing flares with convolutional neural networks",
+ "topics": []
},
{
- "uid": "github/ElectionDataAnalysis/electiondata",
- "url": "https://github.com/ElectionDataAnalysis/electiondata",
- "rel": "/software/repository/github/ElectionDataAnalysis/electiondata",
- "avatar": "https://avatars.githubusercontent.com/u/70550634?v=4",
- "description": "Tools for consolidation and analysis of raw election results from the most reliable sources -- the election agencies themselves.",
+ "uid": "github/JorenSix/Olaf",
+ "url": "https://github.com/JorenSix/Olaf",
+ "rel": "/software/repository/github/JorenSix/Olaf",
+ "avatar": "https://avatars.githubusercontent.com/u/60453?v=4",
+ "description": "Olaf: Overly Lightweight Acoustic Fingerprinting is a portable acoustic fingerprinting system.",
"topics": [
- "election",
- "election-data",
- "common-data-format"
+ "music-information-retrieval",
+ "audio-fingerprinting",
+ "acoustic-fingerprinting",
+ "wasm",
+ "esp32"
]
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- "uid": "github/BioComputingUP/ring-pymol",
- "url": "https://github.com/BioComputingUP/ring-pymol",
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- "description": "This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua",
+ "uid": "github/JorenSix/Panako",
+ "url": "https://github.com/JorenSix/Panako",
+ "rel": "/software/repository/github/JorenSix/Panako",
+ "avatar": "https://avatars.githubusercontent.com/u/60453?v=4",
+ "description": "The Panako acoustic fingerprinting system.",
"topics": [
- "bioinformatics",
- "pymol",
- "plugin"
+ "music-information-retrieval",
+ "acoustic-fingerprinting",
+ "duplicate-detection",
+ "audio-processing"
]
},
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- "uid": "github/bhorowitz/HyPhy-public",
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- "avatar": "https://avatars.githubusercontent.com/u/6059772?v=4",
- "description": "Deep generative model for painting hydrodynamical physics onto dark matter simulations",
- "topics": []
+ "uid": "github/numba/numba",
+ "url": "https://github.com/numba/numba",
+ "rel": "/software/repository/github/numba/numba",
+ "avatar": "https://avatars2.githubusercontent.com/u/1628082?v=4",
+ "description": "NumPy aware dynamic Python compiler using LLVM",
+ "topics": [
+ "python",
+ "numpy",
+ "llvm",
+ "compiler",
+ "cuda",
+ "rocm",
+ "parallel"
+ ]
},
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- "uid": "github/toruseo/UXsim",
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- "avatar": "https://avatars.githubusercontent.com/u/34780089?v=4",
- "description": "Vehicular traffic flow simulator in road network, written in pure Python",
+ "uid": "github/lazzati-astro/MCRaT",
+ "url": "https://github.com/lazzati-astro/MCRaT",
+ "rel": "/software/repository/github/lazzati-astro/MCRaT",
+ "avatar": "https://avatars.githubusercontent.com/u/24950291?v=4",
+ "description": "Monte Carlo Radiation Transfer Through an Astrophysical Jet",
"topics": [
- "traffic",
- "traffic-flow",
- "traffic-flow-simulation",
- "traffic-simulation",
- "dynamic-traffic-assignment",
+ "astrophysics",
+ "photons",
+ "hydrodynamic-simulations",
+ "openmp",
+ "hdf5",
+ "mpi",
"simulation",
- "transportation",
- "transportation-network"
+ "radiative-transfer",
+ "gamma-ray-burst"
]
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- "avatar": "https://avatars.githubusercontent.com/u/33767317?v=4",
- "description": "NWChem: Open Source High-Performance Computational Chemistry",
+ "uid": "github/kbarbary/extinction",
+ "url": "https://github.com/kbarbary/extinction",
+ "rel": "/software/repository/github/kbarbary/extinction",
+ "avatar": "https://avatars.githubusercontent.com/u/970135?v=4",
+ "description": "Fast interstellar dust extinction laws in Python",
"topics": [
- "computational-chemistry",
- "parallel-computing",
- "electronic-structure-calculations",
- "molecular-simulation",
- "density-functional-theory",
- "nwchem",
- "chemistry",
- "hartree-fock",
- "quantum-chemistry"
+ "extinction",
+ "python"
]
},
{
- "uid": "github/BasilioRuiz/SIR-code",
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- "rel": "/software/repository/github/BasilioRuiz/SIR-code",
- "avatar": "https://avatars.githubusercontent.com/u/27848748?v=4",
- "description": null,
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+ "url": "https://github.com/kbarbary/sep",
+ "rel": "/software/repository/github/kbarbary/sep",
+ "avatar": "https://avatars.githubusercontent.com/u/970135?v=4",
+ "description": "Python and C library for source extraction and photometry",
"topics": []
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- "rel": "/software/repository/github/MRChemSoft/mrchem",
- "avatar": "https://avatars.githubusercontent.com/u/16899707?v=4",
- "description": "MultiResolution Chemistry",
+ "uid": "github/kbarbary/nestle",
+ "url": "https://github.com/kbarbary/nestle",
+ "rel": "/software/repository/github/kbarbary/nestle",
+ "avatar": "https://avatars.githubusercontent.com/u/970135?v=4",
+ "description": "Pure Python, MIT-licensed implementation of nested sampling algorithms for evaluating Bayesian evidence.",
"topics": [
- "multiwavelets",
- "computational-chemistry",
- "chemistry",
- "physics",
- "c-plus-plus",
"python",
- "density-functional-theory"
+ "nested-sampling",
+ "bayesian-inference"
]
},
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- "uid": "github/jfwallin/JSPAM",
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- "avatar": "https://avatars.githubusercontent.com/u/1709158?v=4",
- "description": "Software for simulating interacting galaxies using a restricted three-body approximation",
+ "uid": "github/jakevdp/wpca",
+ "url": "https://github.com/jakevdp/wpca",
+ "rel": "/software/repository/github/jakevdp/wpca",
+ "avatar": "https://avatars.githubusercontent.com/u/781659?v=4",
+ "description": "Weighted Principal Component Analysis (PCA) in Python",
"topics": []
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+ "url": "https://github.com/hibridon/hibridon",
+ "rel": "/software/repository/github/hibridon/hibridon",
+ "avatar": "https://avatars.githubusercontent.com/u/81297253?v=4",
+ "description": "Hibridon is a program package to solve the close-coupled equations which occur in the quantum treatment of inelastic atomic and molecular collisions. Gas-phase scattering, photodissociation, collisions of atoms and/or molecules with flat surfaces, and bound states of weakly-bound complexes can be treated",
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- "description": "A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data",
+ "uid": "github/mmelwani/AccretR",
+ "url": "https://github.com/mmelwani/AccretR",
+ "rel": "/software/repository/github/mmelwani/AccretR",
+ "avatar": "https://avatars.githubusercontent.com/u/38257523?v=4",
+ "description": "A planet accretion program that calculates mass, radius and composition along a growth track",
"topics": []
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+ "finite-difference",
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+ "boundary-conditions",
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+ "description": "TCAD Semiconductor Device Simulator",
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+ "semiconductor-physics",
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+ "semiconductor",
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+ "description": "3D Slicer extension for liver analysis and therapy planning",
+ "topics": [
+ "liver",
+ "visualization",
+ "analysis",
+ "3d-slicer-extension",
+ "surgical-planning"
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+ "description": "Specify satisfiability modulo theories problems in Julia and use the SMT-LIB format to interact with SMT solvers.",
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+ "satisfiability-modulo-theories",
+ "smt-lib"
+ ]
+ },
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+ "description": "Directivity functions for various sound sources",
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+ "acoustics",
+ "directivity",
+ "sound",
+ "beamshape",
+ "bioacoustics"
+ ]
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- "description": "Analyzing Radial Velocity Elements",
+ "uid": "github/BD2KGenomics/toil",
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+ "avatar": "https://avatars.githubusercontent.com/u/32805087?v=4",
+ "description": "A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.",
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+ "cwl",
+ "python",
+ "mesos",
+ "slurm",
+ "gridengine",
+ "workflow",
+ "pipeline",
+ "aws",
+ "common-workflow-language",
+ "kubernetes"
+ ]
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"topics": []
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+ "avatar": "https://avatars.githubusercontent.com/u/3829941?v=4",
+ "description": "An open-source Java library for Constraint Programming",
+ "topics": [
+ "constraint-programming",
+ "solver",
+ "constraints",
+ "csp",
+ "copr",
+ "constraint-satisfaction-problem",
+ "java",
+ "constraint-solver",
+ "constraint-optimisation-problem"
+ ]
+ },
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+ "avatar": "https://avatars.githubusercontent.com/u/55438229?v=4",
+ "description": "prototype result browser",
"topics": []
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- "description": "grid parameters and testing for Python modules and functions",
+ "uid": "github/eucp-project/storyboards",
+ "url": "https://github.com/eucp-project/storyboards",
+ "rel": "/software/repository/github/eucp-project/storyboards",
+ "avatar": "https://avatars.githubusercontent.com/u/55438229?v=4",
+ "description": "Simple web application to show example use cases with some interactivity. (visitors via old url will be redirected to the website with new url)",
+ "topics": []
+ },
+ {
+ "uid": "github/SJaffa/Jplots",
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+ "avatar": "https://avatars.githubusercontent.com/u/13678317?v=4",
+ "description": "Astrophysical data analysis tool: quantifying the shape of pixelated structures using moments",
"topics": [
- "gridtest",
- "yaml",
- "testing"
+ "astronomy",
+ "astrophysics",
+ "structure",
+ "dendrogram",
+ "molecular-clouds",
+ "filaments"
]
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- "uid": "github/vsoch/citelang",
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- "description": "markdown syntax and credit system for software!",
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+ "description": "Sensitivities of Prices of Financial Options and Implied Volatilites",
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- "rseng",
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+ "greeks",
+ "asian-option",
+ "r-package",
+ "implied-volatility"
]
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- "description": "Simulate the effect of drugs during total intrevenous anesthesia",
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+ "avatar": "https://avatars.githubusercontent.com/u/20403931?v=4",
+ "description": "Randomly subsample sequencing reads to a specified coverage",
"topics": [
- "anesthesia",
- "simulation",
- "drug-dosage"
+ "bioinformatics",
+ "fastq",
+ "subsampling",
+ "coverage",
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+ "genome-analysis",
+ "random"
]
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- "description": "This repository contains a code to infer distances to stellar clusters and its stars from Gaia parallaxes.",
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+ "avatar": "https://avatars.githubusercontent.com/u/16090037?v=4",
+ "description": "RecombinHunt (alias for the software contained in this repository) is a Python library implementing a data-driven novel method for identifying contributing lineages and breakpoints in recombinant viral sequences.",
"topics": [
- "parallaxer",
- "infer-distances"
+ "big-data",
+ "bioinformatics",
+ "data-science",
+ "recombination",
+ "research",
+ "viral-genomics"
]
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- "description": "This code is to find the center of a distribution of light in an image using the least asymmetry method. The code also contains center of light and fitting a Gaussian routines as well. All functions are designed to take optional weights",
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+ "description": "TFBS perl module",
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+ "avatar": "https://avatars.githubusercontent.com/u/100259686?v=4",
+ "description": "A Bayesian uncertainty quantification toolbox for discrete and continuum numerical models of granular materials, developed by various projects of the University of Twente (NL), the Netherlands eScience Center (NL), University of Newcastle (AU), and Hiroshima University (JP).",
"topics": [
- "cryptanalysis",
- "mpi",
- "logic-circuit",
- "cuda"
+ "bayesian-inference",
+ "low-discrepancy-sequences",
+ "mixture-models",
+ "parameter-identification",
+ "sequential-monte-carlo",
+ "uncertainty-quantification"
]
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- "description": "a generalist algorithm for cellular segmentation with human-in-the-loop capabilities",
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+ "avatar": "https://avatars.githubusercontent.com/u/71179352?v=4",
+ "description": "Structural Source Code Search Engine",
"topics": [
- "segmentation",
- "cell-segmentation",
- "cell-biology"
+ "source",
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+ "ast-matcher"
]
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+ "description": "A 3'-end adapter contaminant trimmer",
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- "description": "Automated Classification of Periodic Variable Stars Using Machine Learning",
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- "description": "Photometric Detrending Algorithm",
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- "avatar": "https://avatars.githubusercontent.com/u/713251?v=4",
- "description": "Python implementation of the Global Sky Model (GSM) for the radio sky between 10 MHz - 5 THz",
- "topics": []
+ "uid": "github/chanzuckerberg/shasta",
+ "url": "https://github.com/chanzuckerberg/shasta",
+ "rel": "/software/repository/github/chanzuckerberg/shasta",
+ "avatar": "https://avatars.githubusercontent.com/u/19917299?v=4",
+ "description": "De novo assembly from Oxford Nanopore reads.",
+ "topics": [
+ "dna",
+ "sequencing",
+ "assembly",
+ "nanopore",
+ "pacbio",
+ "long-read",
+ "de-novo"
+ ]
},
{
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- "url": "https://github.com/FourierFlows/GeophysicalFlows.jl",
- "rel": "/software/repository/github/FourierFlows/GeophysicalFlows.jl",
- "avatar": "https://avatars.githubusercontent.com/u/35040959?v=4",
- "description": "Geophysical fluid dynamics pseudospectral solvers with Julia and FourierFlows.jl.",
+ "uid": "github/chanzuckerberg/idseq-dag",
+ "url": "https://github.com/chanzuckerberg/czid-dag",
+ "rel": "/software/repository/github/chanzuckerberg/idseq-dag",
+ "avatar": "https://avatars.githubusercontent.com/u/19917299?v=4",
+ "description": "Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.",
"topics": [
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- "quasigeostrophy",
- "pdes",
- "sqg",
- "baroclinic",
- "geophysical-fluid-dynamics",
- "fourierflows",
- "navier-stokes"
+ "genomics",
+ "infectious-diseases",
+ "idseq"
]
},
{
- "uid": "github/complextissue/pytximport",
- "url": "https://github.com/complextissue/pytximport",
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- "avatar": "https://avatars.githubusercontent.com/u/124284698?v=4",
- "description": "Feature-rich Python implementation of the tximport package for gene count estimation.",
+ "uid": "github/dputhier/pygtftk",
+ "url": "https://github.com/dputhier/pygtftk",
+ "rel": "/software/repository/github/dputhier/pygtftk",
+ "avatar": "https://avatars.githubusercontent.com/u/1831198?v=4",
+ "description": "A python package and a set of shell commands to handle GTF files",
"topics": [
- "python",
- "rna",
- "rna-seq",
- "scverse",
- "tximport",
"bioinformatics",
- "deseq2",
- "anndata"
+ "gene",
+ "gtf",
+ "bed",
+ "bigwig",
+ "genomics",
+ "transcript",
+ "exon",
+ "cds",
+ "genomic",
+ "tss",
+ "tts",
+ "splicing",
+ "dna-sequences",
+ "intron",
+ "ngs",
+ "chip-seq",
+ "rna-seq"
]
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- "url": "https://github.com/deweylab/RSEM",
- "rel": "/software/repository/github/deweylab/RSEM",
- "avatar": "https://avatars.githubusercontent.com/u/8928563?v=4",
- "description": "RSEM: accurate quantification of gene and isoform expression from RNA-Seq data",
- "topics": []
+ "uid": "github/widdowquinn/pyani",
+ "url": "https://github.com/widdowquinn/pyani",
+ "rel": "/software/repository/github/widdowquinn/pyani",
+ "avatar": "https://avatars.githubusercontent.com/u/63981?v=4",
+ "description": "Application and Python module for average nucleotide identity analyses of microbes.",
+ "topics": [
+ "bioinformatics",
+ "average-nucleotide-identity",
+ "taxonomy",
+ "taxonomy-assignment",
+ "classification",
+ "ani"
+ ]
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{
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- "url": "https://github.com/kimberg/voxbo",
- "rel": "/software/repository/github/kimberg/voxbo",
- "avatar": "https://avatars.githubusercontent.com/u/754848?v=4",
- "description": "free software for brain image analysis",
+ "uid": "github/captain-exoplanet/misttborn",
+ "url": "https://github.com/captain-exoplanet/misttborn",
+ "rel": "/software/repository/github/captain-exoplanet/misttborn",
+ "avatar": "https://avatars.githubusercontent.com/u/45567063?v=4",
+ "description": "MISTTBORN exoplanet fitting code, and various associated codes",
"topics": []
},
{
- "uid": "github/statOmics/satuRnPaper",
- "url": "https://github.com/statOmics/satuRnPaper",
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- "description": "Github repository associated with the publication of *satuRn: Scalable Analysis of Differential Transcript Usage for Bulk and Single-cell RNA-sequencing Applications*",
- "topics": []
+ "uid": "github/Effective-Quadratures/Effective-Quadratures",
+ "url": "https://github.com/Effective-Quadratures/Effective-Quadratures",
+ "rel": "/software/repository/github/Effective-Quadratures/Effective-Quadratures",
+ "avatar": "https://avatars3.githubusercontent.com/u/20475765?v=4",
+ "description": null,
+ "topics": [
+ "polynomials",
+ "quadratures",
+ "least-squares",
+ "interpolation",
+ "approximation",
+ "effective-quadratures",
+ "python",
+ "matrix-factorization"
+ ]
},
{
- "uid": "github/statOmics/tradeSeqPaper",
- "url": "https://github.com/statOmics/tradeSeqPaper",
- "rel": "/software/repository/github/statOmics/tradeSeqPaper",
- "avatar": "https://avatars0.githubusercontent.com/u/24431387?v=4",
- "description": "Scripts to reproduce analyses of tradeSeq paper.",
+ "uid": "github/villano-lab/nrCascadeSim",
+ "url": "https://github.com/villano-lab/nrCascadeSim",
+ "rel": "/software/repository/github/villano-lab/nrCascadeSim",
+ "avatar": "https://avatars.githubusercontent.com/u/52713476?v=4",
+ "description": "calculating the NR spectrum resulting from neutron-capture cascades.",
"topics": []
},
{
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- "url": "https://github.com/johannes-titz/cofad",
- "rel": "/software/repository/github/johannes-titz/cofad",
- "avatar": "https://avatars.githubusercontent.com/u/32065313?v=4",
- "description": null,
+ "uid": "github/tcallister/autoregressive-bbh-inference",
+ "url": "https://github.com/tcallister/autoregressive-bbh-inference",
+ "rel": "/software/repository/github/tcallister/autoregressive-bbh-inference",
+ "avatar": "https://avatars.githubusercontent.com/u/11800515?v=4",
+ "description": "This repository holds code and data release products behind the paper \"A parameter-free tour of the binary black hole population\"",
"topics": []
},
{
- "uid": "github/HannahMDoherty/ChemGAPP",
- "url": "https://github.com/HannahMDoherty/ChemGAPP",
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- "avatar": "https://avatars.githubusercontent.com/u/92042396?v=4",
- "description": "A package and series of Streamlit apps for analysing chemical genomic screen data",
+ "uid": "github/sirocco-rt/sirocco",
+ "url": "https://github.com/sirocco-rt/sirocco",
+ "rel": "/software/repository/github/sirocco-rt/sirocco",
+ "avatar": "https://avatars.githubusercontent.com/u/3064657?v=4",
+ "description": "This is the repository for Sirocco, the radiative transfer code used to model winds in AGN and other systems",
"topics": []
},
{
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- "url": "https://github.com/AdmiralenOla/Scoary",
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- "avatar": "https://avatars.githubusercontent.com/u/14874487?v=4",
- "description": "Pan-genome wide association studies",
+ "uid": "github/DFKI-NI/syclops",
+ "url": "https://github.com/DFKI-NI/syclops",
+ "rel": "/software/repository/github/DFKI-NI/syclops",
+ "avatar": "https://avatars.githubusercontent.com/u/69036303?v=4",
+ "description": "Syclops is a tool for creating synthetic data from 3D virtual environments with photorealistic renderings and pixel-perfect annotations.",
"topics": [
- "gene-presence-absence",
- "gwas",
- "pan-genome",
- "bacteria",
- "genomics"
+ "3d-rendering",
+ "annotation",
+ "asset-management",
+ "bounding-boxes",
+ "computer-vision",
+ "data-generation",
+ "dataset-creation",
+ "depth-estimation",
+ "instance-segmentation",
+ "keypoints",
+ "machine-learning",
+ "photorealistic",
+ "point-clouds",
+ "randomization",
+ "semantic-segmentation",
+ "structured-light",
+ "synthetic-data",
+ "virtual-environments"
]
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{
- "uid": "github/ryanoelkers/DIA",
- "url": "https://github.com/ryanoelkers/DIA",
- "rel": "/software/repository/github/ryanoelkers/DIA",
- "avatar": "https://avatars.githubusercontent.com/u/18665480?v=4",
- "description": "Difference Image Analysis for Wide-Field Surveys",
- "topics": []
- },
- {
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- "url": "https://github.com/weiliu123/PCLassoReg",
- "rel": "/software/repository/github/weiliu123/PCLassoReg",
- "avatar": "https://avatars.githubusercontent.com/u/20275072?v=4",
- "description": null,
+ "uid": "github/RafiKueng/SpaghettiLens",
+ "url": "https://github.com/RafiKueng/SpaghettiLens",
+ "rel": "/software/repository/github/RafiKueng/SpaghettiLens",
+ "avatar": "https://avatars.githubusercontent.com/u/937466?v=4",
+ "description": "Webbased Gravitational Lens Modelling Tool (client and server side)",
"topics": []
},
{
- "uid": "github/PaulKuin/uvotpy",
- "url": "https://github.com/PaulKuin/uvotpy",
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- "avatar": "https://avatars.githubusercontent.com/u/5159688?v=4",
- "description": "Swift UVOT grisms - spectral extraction",
+ "uid": "github/shergreen/SatGen",
+ "url": "https://github.com/shergreen/SatGen",
+ "rel": "/software/repository/github/shergreen/SatGen",
+ "avatar": "https://avatars.githubusercontent.com/u/842217?v=4",
+ "description": "A semi-analytical satellite galaxy and dark matter halo generator",
"topics": []
},
{
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- "url": "https://github.com/cosmo-epfl/chemiscope",
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- "avatar": "https://avatars0.githubusercontent.com/u/7110305?v=4",
- "description": "An interactive structure/property explorer for materials and molecules",
+ "uid": "github/wmglab-duke/ascent",
+ "url": "https://github.com/wmglab-duke/ascent",
+ "rel": "/software/repository/github/wmglab-duke/ascent",
+ "avatar": "https://avatars.githubusercontent.com/u/86266914?v=4",
+ "description": "ASCENT (Automated Simulations to Characterize Electrical Nerve Thresholds): A pipeline for sample-specific computational modeling of electrical stimulation of peripheral nerves",
"topics": []
},
{
- "uid": "github/callendeprieto/ferre",
- "url": "https://github.com/callendeprieto/ferre",
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- "avatar": "https://avatars.githubusercontent.com/u/24915449?v=4",
- "description": "FERRE matches physical models to measurements",
+ "uid": "github/EC-Earth/ece2cmor3",
+ "url": "https://github.com/EC-Earth/ece2cmor3",
+ "rel": "/software/repository/github/EC-Earth/ece2cmor3",
+ "avatar": "https://avatars2.githubusercontent.com/u/39129421?v=4",
+ "description": "Post-processing and cmorization of ec-earth output",
"topics": []
},
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- "uid": "github/UtrechtUniversity/raster_extraction",
- "url": "https://github.com/UtrechtUniversity/raster_extraction",
- "rel": "/software/repository/github/UtrechtUniversity/raster_extraction",
- "avatar": "https://avatars.githubusercontent.com/u/11516575?v=4",
- "description": null,
+ "uid": "github/rdpstaff/ReadSeq",
+ "url": "https://github.com/rdpstaff/ReadSeq",
+ "rel": "/software/repository/github/rdpstaff/ReadSeq",
+ "avatar": "https://avatars.githubusercontent.com/u/2041409?v=4",
+ "description": "Java based common sequence file format reader and sequence file manipulation. Most RDP projects require this package.",
"topics": []
},
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- "uid": "github/secastel/phaser",
- "url": "https://github.com/secastel/phaser",
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- "avatar": "https://avatars.githubusercontent.com/u/9827367?v=4",
- "description": "phasing and Allele Specific Expression from RNA-seq",
+ "uid": "github/rdpstaff/AlignmentTools",
+ "url": "https://github.com/rdpstaff/AlignmentTools",
+ "rel": "/software/repository/github/rdpstaff/AlignmentTools",
+ "avatar": "https://avatars.githubusercontent.com/u/2041409?v=4",
+ "description": "Tools for pairwise sequence comparison, distance calculation, and hidden markov model sequence scoring (using HMMER3 models). Many RDP Projects require this package.",
"topics": []
},
{
- "uid": "github/dbosul/CWITools",
- "url": "https://github.com/dbosul/cwitools",
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- "avatar": "https://avatars.githubusercontent.com/u/18314184?v=4",
- "description": "Tools for Cosmic Web Imager Data",
+ "uid": "github/rdpstaff/classifier",
+ "url": "https://github.com/rdpstaff/classifier",
+ "rel": "/software/repository/github/rdpstaff/classifier",
+ "avatar": "https://avatars.githubusercontent.com/u/2041409?v=4",
+ "description": "RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s",
"topics": []
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- "url": "https://github.com/shadden/celmech",
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- "avatar": "https://avatars.githubusercontent.com/u/1007148?v=4",
- "description": "Sandbox for celestial mechanics calculations",
+ "uid": "github/rdpstaff/TaxonomyTree",
+ "url": "https://github.com/rdpstaff/TaxonomyTree",
+ "rel": "/software/repository/github/rdpstaff/TaxonomyTree",
+ "avatar": "https://avatars.githubusercontent.com/u/2041409?v=4",
+ "description": "TaxonomyTree building and traversal utility classes.",
"topics": []
},
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- "uid": "github/astropy/astropy",
- "url": "https://github.com/astropy/astropy",
- "rel": "/software/repository/github/astropy/astropy",
- "avatar": "https://avatars0.githubusercontent.com/u/847984?v=4",
- "description": "Repository for the Astropy core package",
+ "uid": "github/cdslaborg/paramonte",
+ "url": "https://github.com/cdslaborg/paramonte",
+ "rel": "/software/repository/github/cdslaborg/paramonte",
+ "avatar": "https://avatars.githubusercontent.com/u/45322013?v=4",
+ "description": "ParaMonte: Plain Powerful Parallel Monte Carlo and MCMC Library for Python, MATLAB, Fortran, C++, C.",
"topics": [
+ "monte-carlo",
+ "parallel-library",
+ "markov-chain",
+ "adaptive-learning",
+ "bayesian-inference",
+ "bayesian-statistics",
+ "machine-learning",
+ "machine-learning-algorithms",
+ "machine-learning-library",
+ "sampling",
+ "intergration",
+ "c",
+ "cpp",
+ "fortran",
"python",
- "astronomy",
- "science"
+ "matlab",
+ "paramonte-library",
+ "monte-carlo-simulations",
+ "mpi",
+ "mcmc"
]
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- "url": "https://github.com/astropy/ccdproc",
- "rel": "/software/repository/github/astropy/ccdproc",
- "avatar": "https://avatars.githubusercontent.com/u/847984?v=4",
- "description": "Astropy affiliated package for reducing optical/IR CCD data",
+ "uid": "github/Blosc/c-blosc",
+ "url": "https://github.com/Blosc/c-blosc",
+ "rel": "/software/repository/github/Blosc/c-blosc",
+ "avatar": "https://avatars3.githubusercontent.com/u/6469856?v=4",
+ "description": "A blocking, shuffling and loss-less compression library that can be faster than `memcpy()`.",
"topics": [
- "python",
- "astropy-affiliated",
- "ccd",
- "astronomy"
+ "c",
+ "compression",
+ "fast"
]
},
{
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- "url": "https://github.com/astropy/astroquery",
- "rel": "/software/repository/github/astropy/astroquery",
- "avatar": "https://avatars.githubusercontent.com/u/847984?v=4",
- "description": "Functions and classes to access online data resources. Maintainers: @keflavich and @bsipocz and @ceb8",
+ "uid": "github/mirnylab/pairtools",
+ "url": "https://github.com/open2c/pairtools",
+ "rel": "/software/repository/github/mirnylab/pairtools",
+ "avatar": "https://avatars.githubusercontent.com/u/70977326?v=4",
+ "description": "CLI tools to process mapped Hi-C data",
+ "topics": []
+ },
+ {
+ "uid": "github/mirnylab/cooler",
+ "url": "https://github.com/open2c/cooler",
+ "rel": "/software/repository/github/mirnylab/cooler",
+ "avatar": "https://avatars.githubusercontent.com/u/70977326?v=4",
+ "description": "is a support library for a sparse, compressed, binary persistent storage format, also called cooler, used to store genomic interaction data, such as Hi-C contact matrices.",
"topics": [
- "astropy",
+ "contact-matrix",
+ "hdf5",
"python",
- "astropy-affiliated",
- "astronomy",
- "hacktoberfest",
- "closember"
+ "sparse",
+ "genomics",
+ "hi-c",
+ "bioinformatics",
+ "file-format",
+ "cooler"
]
},
{
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- "url": "https://github.com/astropy/astroplan",
- "rel": "/software/repository/github/astropy/astroplan",
- "avatar": "https://avatars.githubusercontent.com/u/847984?v=4",
- "description": "Observation planning package for astronomers",
+ "uid": "github/ocean-eddy-cpt/gcm-filters",
+ "url": "https://github.com/ocean-eddy-cpt/gcm-filters",
+ "rel": "/software/repository/github/ocean-eddy-cpt/gcm-filters",
+ "avatar": "https://avatars.githubusercontent.com/u/54479818?v=4",
+ "description": "Diffusion-based Spatial Filtering of Gridded Data",
"topics": []
},
{
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- "url": "https://github.com/astropy/specutils",
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- "description": "An Astropy coordinated package for astronomical spectroscopy. Maintainers: @nmearl @rosteen @keflavich @eteq",
- "topics": [
- "astropy"
- ]
+ "uid": "github/simple-crypto/SCALib",
+ "url": "https://github.com/simple-crypto/SCALib",
+ "rel": "/software/repository/github/simple-crypto/SCALib",
+ "avatar": "https://avatars.githubusercontent.com/u/82374905?v=4",
+ "description": "Side-Channel Analysis Library",
+ "topics": []
},
{
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- "url": "https://github.com/astropy/astroscrappy",
- "rel": "/software/repository/github/astropy/astroscrappy",
- "avatar": "https://avatars.githubusercontent.com/u/847984?v=4",
- "description": "Speedy Cosmic Ray Annihilation Package in Python",
+ "uid": "github/dawolfgang/MRrelation",
+ "url": "https://github.com/dawolfgang/MRrelation",
+ "rel": "/software/repository/github/dawolfgang/MRrelation",
+ "avatar": "https://avatars.githubusercontent.com/u/7773526?v=4",
+ "description": null,
"topics": []
},
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- "url": "https://github.com/astropy/halotools",
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- "avatar": "https://avatars.githubusercontent.com/u/847984?v=4",
- "description": "Python package for studying large scale structure, cosmology, and galaxy evolution using N-body simulations and halo models",
+ "uid": "github/CompGenomeLab/boquila",
+ "url": "https://github.com/CompGenomeLab/boquila",
+ "rel": "/software/repository/github/CompGenomeLab/boquila",
+ "avatar": "https://avatars.githubusercontent.com/u/57796291?v=4",
+ "description": "NGS read simulator to eliminate read nucleotide bias in sequence analysis.",
"topics": []
},
{
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- "url": "https://github.com/astropy/SPISEA",
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- "avatar": "https://avatars.githubusercontent.com/u/847984?v=4",
- "description": "Stellar Population Synthesis Modeling",
- "topics": []
+ "uid": "github/adrientaudiere/MiscMetabar",
+ "url": "https://github.com/adrientaudiere/MiscMetabar",
+ "rel": "/software/repository/github/adrientaudiere/MiscMetabar",
+ "avatar": "https://avatars.githubusercontent.com/u/6680165?v=4",
+ "description": "R package MiscMetabar: Miscellaneous functions for metabarcoding analysis",
+ "topics": [
+ "ecology",
+ "metabarcoding",
+ "ngs-analysis",
+ "package",
+ "r"
+ ]
},
{
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- "url": "https://github.com/deeprob/ThioesteraseEnzymeSpecificity",
- "rel": "/software/repository/github/deeprob/ThioesteraseEnzymeSpecificity",
- "avatar": "https://avatars.githubusercontent.com/u/42780724?v=4",
- "description": null,
+ "uid": "github/VicidominiLab/BrightEyes-MCS",
+ "url": "https://github.com/VicidominiLab/BrightEyes-MCS",
+ "rel": "/software/repository/github/VicidominiLab/BrightEyes-MCS",
+ "avatar": "https://avatars.githubusercontent.com/u/61466143?v=4",
+ "description": "BrightEyes Microscope Control Suite",
"topics": []
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- "avatar": "https://avatars.githubusercontent.com/u/22654591?v=4",
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+ "uid": "github/MRChemSoft/mrchem",
+ "url": "https://github.com/MRChemSoft/mrchem",
+ "rel": "/software/repository/github/MRChemSoft/mrchem",
+ "avatar": "https://avatars.githubusercontent.com/u/16899707?v=4",
+ "description": "MultiResolution Chemistry",
+ "topics": [
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+ "computational-chemistry",
+ "chemistry",
+ "physics",
+ "c-plus-plus",
+ "python",
+ "density-functional-theory"
+ ]
},
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+ "description": "The Hough Stream Spotter (HSS)",
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- "description": "3D expansions",
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+ "description": "RAxML Next Generation: faster, easier-to-use and more flexible",
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+ "bioinformatics",
+ "phylogenetics",
+ "maximum-likelihood",
+ "mpi",
+ "pthreads"
+ ]
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+ "avatar": "https://avatars.githubusercontent.com/u/81537532?v=4",
+ "description": "Pipeline for analyzing microglial fine process motility from 4D/5D multi-photon imaging data",
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+ "image-processing",
+ "image-segmentation",
+ "microglia",
+ "microglial-motility",
+ "motility",
+ "motility-analysis",
+ "neuroscience",
+ "python"
+ ]
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"topics": [
- "genomics",
- "long-read-sequencing",
- "prioritization",
- "bioinformatics",
- "rare-disease"
+ "covid-19",
+ "rstats",
+ "data",
+ "regional-data",
+ "open-science",
+ "r6"
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- "description": "4DModeller, Bayesian Spatio-temporal modeling in R",
- "topics": []
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+ "url": "https://github.com/calebclass/Shiny-NanoTube",
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+ "avatar": "https://avatars.githubusercontent.com/u/272631?v=4",
+ "description": "A web app for easier NanoString gene expression analysis",
+ "topics": [
+ "shiny",
+ "differential-expression",
+ "nanostring"
+ ]
},
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- "avatar": "https://avatars.githubusercontent.com/u/82316354?v=4",
- "description": "Adaptive Trial Simulator",
+ "uid": "github/RussellJurek/busy-function-fitting",
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+ "avatar": "https://avatars.githubusercontent.com/u/7555210?v=4",
+ "description": "A C/C++ library and Python module that allows users to fit the Busy Function (Westmeier, Jurek, Obreschkow, Koribalski & Staveley-Smith 2013) to data. Previously available at code.google.com/p/busy-function-fitting",
"topics": []
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- "description": "A Python library for generating synthetic test data and validating ETL (Extract, Transform, Load) outputs.",
+ "uid": "github/abatten/fruitbat",
+ "url": "https://github.com/abatten/fruitbat",
+ "rel": "/software/repository/github/abatten/fruitbat",
+ "avatar": "https://avatars.githubusercontent.com/u/24905106?v=4",
+ "description": "A fast radio burst (FRB) redshift estimation package written in Python.",
+ "topics": [
+ "frb",
+ "redshift",
+ "dispersion",
+ "measure",
+ "dm",
+ "python",
+ "astronomy",
+ "astrophysics",
+ "radio"
+ ]
+ },
+ {
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+ "url": "https://github.com/parklab/LiRA",
+ "rel": "/software/repository/github/parklab/LiRA",
+ "avatar": "https://avatars.githubusercontent.com/u/1216524?v=4",
+ "description": "(Linked Read Analysis) a computational tool for removing amplification artifacts from single-cell DNA sequencing data and estimating mutation rates in single cells.",
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+ "avatar": "https://avatars.githubusercontent.com/u/1216524?v=4",
+ "description": "SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)",
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- "avatar": "https://avatars.githubusercontent.com/u/53371536?v=4",
+ "uid": "github/galkintool/galkin",
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+ "uid": "github/XGI-MSU/PyIMRPhenomD",
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- "avatar": "https://avatars.githubusercontent.com/u/54578447?v=4",
+ "uid": "github/XGI-MSU/WDMWaveletTransforms",
+ "url": "https://github.com/XGI-MSU/WDMWaveletTransforms",
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+ "avatar": "https://avatars.githubusercontent.com/u/120123747?v=4",
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- "description": "TN93 fast distance calculator",
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+ "uid": "github/QuaCaTeam/quaca",
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+ "avatar": "https://avatars.githubusercontent.com/u/65653300?v=4",
+ "description": "QuaCa is an open-source library which provides fast calculations of nonequilibrium atom-surface interactions.",
+ "topics": [
+ "physics",
+ "fluctuations",
+ "integration",
+ "casimir",
+ "quantum"
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- "description": null,
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+ "rel": "/software/repository/github/mofanv/darknetz",
+ "avatar": "https://avatars.githubusercontent.com/u/23327428?v=4",
+ "description": "runs several layers of a deep learning model in TrustZone",
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- "avatar": "https://avatars.githubusercontent.com/u/5399958?v=4",
- "description": "Dirty but quick Fermi-LAT analysis",
+ "uid": "github/matiscke/lcps",
+ "url": "https://github.com/matiscke/lcps",
+ "rel": "/software/repository/github/matiscke/lcps",
+ "avatar": "https://avatars.githubusercontent.com/u/19270173?v=4",
+ "description": "A tool for pre-selecting light curves with possible transit signatures",
"topics": []
},
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- "avatar": "https://avatars.githubusercontent.com/u/1679318?v=4",
- "description": "Loads the three bisonpic packages (bisonpictools, shinybisonpic, and runbisonpic)",
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+ "url": "https://github.com/fforster/DELIGHT",
+ "rel": "/software/repository/github/fforster/delight",
+ "avatar": "https://avatars.githubusercontent.com/u/5090828?v=4",
+ "description": "Deep Learning Identification of Galaxy Hosts in Transients",
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- "description": "Easily install and load bbou (boreal caribou) R packages",
+ "uid": "github/ExoplanetML/Nigraha",
+ "url": "https://github.com/ExoplanetML/Nigraha",
+ "rel": "/software/repository/github/ExoplanetML/Nigraha",
+ "avatar": "https://avatars.githubusercontent.com/u/77851194?v=4",
+ "description": "A neural network based pipeline to identify and evaluate planet candidates from TESS light curves.",
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- "description": "Efficient library for spectral analysis in high-energy astrophysics.",
+ "uid": "github/APGG-Lab/APGG",
+ "url": "https://github.com/APGG-Lab/APGG",
+ "rel": "/software/repository/github/APGG-Lab/APGG",
+ "avatar": "https://avatars.githubusercontent.com/u/81275407?v=4",
+ "description": "A Modular Toolkit for Public Goods Game Computation",
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- "spectral-analysis",
- "python",
- "astrophysics",
- "astronomy",
- "jax",
- "numpyro",
- "elisa",
- "gamma-ray",
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+ "genetic-algorithm",
+ "genetic-programming",
+ "public-goods-game"
]
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+ "url": "https://github.com/Griffan/VerifyBamID",
+ "rel": "/software/repository/github/Griffan/VerifyBamID",
+ "avatar": "https://avatars.githubusercontent.com/u/2037838?v=4",
+ "description": "VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.",
"topics": [
- "cuda",
- "hpc",
- "jax",
- "xla"
+ "genetics",
+ "dna-sequences",
+ "qc-analysis",
+ "contamination",
+ "bioinformatics",
+ "biostatistics",
+ "bam",
+ "cram"
]
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- "chemical-equilibrium",
- "planet-formation",
- "planet-composition",
- "rocky-planets"
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+ "rel": "/software/repository/github/arkavo/CUDA-METRO",
+ "avatar": "https://avatars.githubusercontent.com/u/16555024?v=4",
+ "description": "Based on the pyCUDA enabled Metropolis MCMC for spintronics simulations.",
+ "topics": []
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+ "uid": "github/DrJCarson/BoundedCoalescent",
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+ "rel": "/software/repository/github/DrJCarson/BoundedCoalescent",
+ "avatar": "https://avatars.githubusercontent.com/u/9008332?v=4",
+ "description": "Sampling and likelihood estimation for the bounded coalescent",
"topics": []
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- "description": "Backward-integration-based non-axisymmetric models of the Milky Way disk",
+ "uid": "github/chervias/DustFilaments",
+ "url": "https://github.com/chervias/DustFilaments",
+ "rel": "/software/repository/github/chervias/DustFilaments",
+ "avatar": "https://avatars.githubusercontent.com/u/22419110?v=4",
+ "description": "Paint filaments to produce a thermal dust full sky map at mm frequencies",
"topics": [
- "astronomy-astrophysics",
- "milky-way-galaxy"
+ "cosmology",
+ "planck",
+ "dust",
+ "microwave"
]
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- "avatar": "https://avatars.githubusercontent.com/u/120204754?v=4",
- "description": "A high-performance compression library optimized for up-to 16-bit digitized analog signals",
- "topics": []
+ "uid": "github/networkx/networkx",
+ "url": "https://github.com/networkx/networkx",
+ "rel": "/software/repository/github/networkx/networkx",
+ "avatar": "https://avatars2.githubusercontent.com/u/388785?v=4",
+ "description": "Network Analysis in Python",
+ "topics": [
+ "python",
+ "complex-networks",
+ "graph-theory",
+ "graph-algorithms",
+ "graph-analysis",
+ "graph-generation",
+ "graph-visualization"
+ ]
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- "description": "BridgeStan provides efficient in-memory access through Python, Julia, and R to the methods of a Stan model.",
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+ "avatar": "https://avatars.githubusercontent.com/u/51907567?v=4",
+ "description": "Implementations for solving the Group and Fused Graphical Lasso problem",
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- "c",
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- "julia",
- "python",
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+ "graphical-models",
+ "optimization",
+ "latent-variable-models",
+ "network-inference",
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]
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+ "avatar": "https://avatars.githubusercontent.com/u/10121557?v=4",
+ "description": "Python code for calculating non-parametric morphological diagnostics of galaxy images.",
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- "spectral-lines",
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+ "variable-importance",
+ "interactions",
+ "targeted-learning",
+ "statistics",
+ "mixed-exposure"
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+ "description": "Pan-genome wide association studies",
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- "eeg",
- "visualization"
+ "gene-presence-absence",
+ "gwas",
+ "pan-genome",
+ "bacteria",
+ "genomics"
]
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- "spatial-analysis",
- "location-allocation",
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- "description": ":package: :snake: Python package to model and forecast the risk of deforestation",
+ "uid": "github/argiopetech/base",
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+ "avatar": "https://avatars.githubusercontent.com/u/395366?v=4",
+ "description": "Bayesian Analysis for Stellar Evolution",
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- "land-use-change",
- "spatial-modelling",
- "spatial-analysis",
- "forecasting",
- "spatial-autocorrelation",
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- "ipbes",
- "co2-emissions",
- "ipcc",
- "forest-cover-change",
- "deforestation",
- "deforestation-risk",
- "redd"
+ "bayesian-analysis",
+ "mcmc",
+ "astronomy",
+ "bayesian-statistics",
+ "c-plus-plus"
]
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{
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- "description": "edit and Hamming distances for biological sequences",
- "topics": []
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+ "rel": "/software/repository/github/shenwei356/unikmer",
+ "avatar": "https://avatars.githubusercontent.com/u/2655946?v=4",
+ "description": "Toolkit for k-mer with taxonomic information",
+ "topics": [
+ "kmer",
+ "golang",
+ "unique",
+ "union",
+ "intersection",
+ "difference",
+ "unik",
+ "k-mer",
+ "set"
+ ]
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{
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- "avatar": "https://avatars.githubusercontent.com/u/724864?v=4",
- "description": "Read and write FASTQ and FASTA efficiently from Python",
+ "uid": "github/shenwei356/seqkit",
+ "url": "https://github.com/shenwei356/seqkit",
+ "rel": "/software/repository/github/shenwei356/seqkit",
+ "avatar": "https://avatars.githubusercontent.com/u/2655946?v=4",
+ "description": "A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang",
"topics": [
- "python",
- "bioinformatics"
+ "bioinformatics",
+ "cross-platform",
+ "fasta",
+ "golang",
+ "sequence",
+ "toolkit",
+ "fastq",
+ "tool",
+ "manipulation"
]
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- "avatar": "https://avatars.githubusercontent.com/u/724864?v=4",
- "description": "finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.",
+ "uid": "github/shenwei356/LexicMap",
+ "url": "https://github.com/shenwei356/LexicMap",
+ "rel": "/software/repository/github/shenwei356/LexicMap",
+ "avatar": "https://avatars.githubusercontent.com/u/2655946?v=4",
+ "description": "LexicMap: efficient sequence alignment against millions of prokaryotic genomes",
"topics": [
- "python",
- "bioinformatics"
+ "prokaryotic-genomes",
+ "sequence-alignment",
+ "sequence-search",
+ "alignment",
+ "large-scale-dataset",
+ "microbial-genomes",
+ "bacterial-database",
+ "bacterial-genomes",
+ "lexichash"
]
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- "avatar": "https://avatars.githubusercontent.com/u/6381336?v=4",
- "description": "A simple website analyzes CRISPR experiment for Oxford Nanopore Sequencing data.",
- "topics": []
+ "uid": "github/shenwei356/kmcp",
+ "url": "https://github.com/shenwei356/kmcp",
+ "rel": "/software/repository/github/shenwei356/kmcp",
+ "avatar": "https://avatars.githubusercontent.com/u/2655946?v=4",
+ "description": "Accurate metagenomic profiling && Fast large-scale sequence/genome searching",
+ "topics": [
+ "kmer",
+ "sketch",
+ "searching",
+ "metagenomics",
+ "taxonomic-classification",
+ "taxonomic-profiling",
+ "scaled-minhash",
+ "syncmers",
+ "cobs",
+ "sketching",
+ "bigsi",
+ "fracminhash",
+ "virome"
+ ]
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{
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- "description": "A lightweight python module to interact with atlases for systems neuroscience",
+ "uid": "github/shenwei356/csvtk",
+ "url": "https://github.com/shenwei356/csvtk",
+ "rel": "/software/repository/github/shenwei356/csvtk",
+ "avatar": "https://avatars.githubusercontent.com/u/2655946?v=4",
+ "description": "a set of tools for manipulation of CSV/TSV files. It is convenient for rapid data investigation and integration into analysis pipelines.",
"topics": [
- "neuroscience",
- "python",
- "microscopy",
- "registration",
- "visualisation",
- "brain",
- "atlases"
+ "csv",
+ "tsv",
+ "cross-platform",
+ "golang",
+ "toolkit",
+ "bioinformatics",
+ "command-line",
+ "tool"
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- "description": "Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly",
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+ "rel": "/software/repository/github/paulbrodersen/netgraph",
+ "avatar": "https://avatars.githubusercontent.com/u/8046146?v=4",
+ "description": "Publication-quality network visualisations in python",
"topics": [
- "pacbio",
- "nanopore",
- "assembly",
- "alignment"
+ "network",
+ "visualization",
+ "network-analysis",
+ "publication-quality-plots",
+ "graph",
+ "graph-tool",
+ "igraph",
+ "matplotlib",
+ "network-science",
+ "networkx",
+ "python"
]
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- "avatar": "https://avatars.githubusercontent.com/u/1474554?v=4",
- "description": "A Julia library for working with curvilinear grids",
+ "uid": "github/carnotresearch/cr-sparse",
+ "url": "https://github.com/carnotresearch/cr-sparse",
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+ "avatar": "https://avatars.githubusercontent.com/u/71070447?v=4",
+ "description": "Functional models and algorithms for sparse signal processing",
"topics": [
- "cfd",
- "julia",
- "mesh-generation",
- "pde"
+ "sparse-representations",
+ "jax",
+ "wavelets",
+ "convex-optimization",
+ "linear-operators",
+ "compressive-sensing",
+ "functional-programming",
+ "xla",
+ "l1-regularization",
+ "sparse-linear-systems"
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- "description": "Software zur Berechnung charakteristischer Grenzen nach ISO 11929 f\u00fcr Messungen der Aktivit\u00e4t",
- "topics": []
+ "uid": "github/Yash-10/Periodogram-Comparison-Optimize-Planet-Detection",
+ "url": "https://github.com/Yash-10/Periodogram-Comparison-Optimize-Planet-Detection",
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+ "avatar": "https://avatars.githubusercontent.com/u/68844397?v=4",
+ "description": "Extreme Value Theory for comparing periodograms: Optimizing future transiting exoplanet surveys",
+ "topics": [
+ "exoplanet-transits",
+ "extreme-value-statistics",
+ "periodogram"
+ ]
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- "description": "R toolkit for the analysis of single-cell chromatin data",
+ "uid": "github/Yash-10/beta-sgp",
+ "url": "https://github.com/Yash-10/beta-sgp",
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+ "avatar": "https://avatars.githubusercontent.com/u/68844397?v=4",
+ "description": "Scaled Gradient Projection (SGP) algorithm with beta divergence",
"topics": [
- "single-cell",
- "bioinformatics",
- "atac"
+ "astronomy",
+ "image-restoration",
+ "mathematical-optimization"
]
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- "description": "Meta analysis pathway enrichment",
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+ "url": "https://github.com/jts/sga",
+ "rel": "/software/repository/github/jts/sga",
+ "avatar": "https://avatars.githubusercontent.com/u/389535?v=4",
+ "description": "de novo sequence assembler using string graphs",
"topics": []
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- "avatar": "https://avatars.githubusercontent.com/u/60978260?v=4",
- "description": " Chemprop benchmarking scripts and data",
- "topics": []
+ "uid": "github/jts/nanopolish",
+ "url": "https://github.com/jts/nanopolish",
+ "rel": "/software/repository/github/jts/nanopolish",
+ "avatar": "https://avatars.githubusercontent.com/u/389535?v=4",
+ "description": "Signal-level algorithms for MinION data",
+ "topics": [
+ "bioinformatics",
+ "genome-assembly",
+ "epigenetics",
+ "methylation",
+ "science",
+ "c-plus-plus"
+ ]
},
{
- "uid": "github/evanoconnor/GR1D",
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- "description": "General Relativistic, Spherically Symmetry, Neutrino Transport Code for Stellar Collapse",
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+ "url": "https://github.com/pkgw/pwkit",
+ "rel": "/software/repository/github/pkgw/pwkit",
+ "avatar": "https://avatars.githubusercontent.com/u/59598?v=4",
+ "description": "Miscellaneous science/astronomy tools.",
"topics": []
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- "description": "Tool to generate spherically symmetric initial conditions for N-body simulations.",
+ "uid": "github/AemulusProject/bias_emulator",
+ "url": "https://github.com/AemulusProject/bias_emulator",
+ "rel": "/software/repository/github/AemulusProject/bias_emulator",
+ "avatar": "https://avatars.githubusercontent.com/u/38292013?v=4",
+ "description": "Emulator for the halo bias from The Aemulus Project.",
"topics": []
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- "avatar": "https://avatars.githubusercontent.com/u/3490790?v=4",
- "description": "lightweight C implementation of name collating BAM file input and BAM file output ",
+ "uid": "github/kathrinnp/DarkRayNet",
+ "url": "https://github.com/kathrinnp/DarkRayNet",
+ "rel": "/software/repository/github/kathrinnp/DarkRayNet",
+ "avatar": "https://avatars.githubusercontent.com/u/55040575?v=4",
+ "description": "Quick cosmic ray antiproton simulations for dark matter annihilation models using neural networks",
"topics": []
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- "avatar": "https://avatars.githubusercontent.com/u/16543743?v=4",
- "description": "A virtual optogenetics laboratory",
+ "uid": "github/vocalpy/crowsetta",
+ "url": "https://github.com/vocalpy/crowsetta",
+ "rel": "/software/repository/github/vocalpy/crowsetta",
+ "avatar": "https://avatars.githubusercontent.com/u/99543036?v=4",
+ "description": "A tool to work with any format for annotating vocalizations",
"topics": [
+ "dataset",
+ "annotation",
+ "csv",
"python",
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- "opsin",
- "jupyter-widget",
- "computational-neuroscience",
- "neuron",
- "brian2",
- "neuroscience",
- "brain",
- "brainweb"
+ "python3",
+ "annotation-format",
+ "birdsong",
+ "animal-communication",
+ "animal-vocalizations",
+ "bioacoustics",
+ "bioacoustic-analysis"
]
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- "description": "\ud83d\udd14 Fit, predict, and plot 2D Gaussians in R",
+ "uid": "github/benlansdell/ethome",
+ "url": "https://github.com/benlansdell/ethome",
+ "rel": "/software/repository/github/benlansdell/ethome",
+ "avatar": "https://avatars.githubusercontent.com/u/7505975?v=4",
+ "description": "Tools for machine learning of animal behavior",
"topics": [
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- "r",
- "rstats",
- "gaussian-interpolation",
- "gaussian-plot",
- "plotting",
- "gaussian-volume",
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- "gaussian-fit"
+ "boris",
+ "dlc",
+ "pose-tracking",
+ "supervised-learning",
+ "deeplabcut",
+ "neurodata-without-borders",
+ "ndx-pose"
]
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- "description": "Improving long-read barcode-variant mapping using multiple sequence alignment. ",
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+ "url": "https://github.com/thomas0809/MolScribe",
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+ "avatar": "https://avatars.githubusercontent.com/u/11373553?v=4",
+ "description": "Robust Molecular Structure Recognition with Image-to-Graph Generation",
"topics": [
- "bioinformatics",
- "pacbio",
- "multiple-sequence-alignment"
+ "chemistry",
+ "deep-learning",
+ "molecule"
]
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+ "description": "Effortless method to record provenance in Python",
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+ "science",
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+ "database",
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+ "description": "Synchrotron peak estimator for blazars",
"topics": [
- "remote-sensing-in-r",
- "statistical-analysis",
- "big-data",
- "autocorrelation"
+ "blazar",
+ "astrophysics"
]
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- "openms",
- "python",
- "ms-data",
- "hacktoberfest",
- "hacktoberfest2022"
+ "clade",
+ "clades",
+ "coronavirus",
+ "covid",
+ "covid-19",
+ "dna",
+ "ncov",
+ "neherlab",
+ "nextstrain",
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+ "rna",
+ "sars-cov-2",
+ "science",
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+ "sequencing",
+ "strain",
+ "virus",
+ "covid19",
+ "next-generation-sequencing",
+ "influenza"
]
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+ "description": "Web app for visualizing pathogen evolution",
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- "description": "The fundamental package for scientific computing with Python.",
+ "uid": "github/p-sira/ellip",
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+ "rel": "/software/repository/github/p-sira/ellip",
+ "avatar": "https://avatars.githubusercontent.com/u/186296676?v=4",
+ "description": "Elliptic integrals for Rust",
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- "numpy",
- "python"
+ "elliptic-integrals",
+ "math",
+ "rust",
+ "special-functions"
]
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+ "avatar": "https://avatars.githubusercontent.com/u/15136508?v=4",
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+ "avatar": "https://avatars.githubusercontent.com/u/39486397?v=4",
+ "description": "contains programs to perform EM based segmentation of images in nifti or analyse format.",
+ "topics": []
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- "algebraic",
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- "programming-language",
- "optimization",
- "compiler-optimization",
- "compiler-construction"
+ "3d-genome",
+ "3d-genome-browser",
+ "genomics",
+ "hi-c",
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]
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+ "description": "A Biostatistical tool for Transcriptomics Analysis",
+ "topics": []
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+ "description": "Tools for analyzing galaxy clusters.",
"topics": [
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+ "cosmology",
+ "galaxy-clusters",
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+ "data-science",
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+ "description": "Python utilities for stellar model grid interpolation",
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+ "description": "Python simulations of stellar butterfly diagrams and rotational light curves",
"topics": []
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+ "topics": []
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+ "description": "A universal protein model for prokaryotic gene prediction",
+ "topics": []
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+ "description": "Metagenomics pipeline",
+ "topics": []
+ },
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+ "topics": []
+ },
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+ "description": "Object-oriented extension to the CMake language.",
"topics": [
- "astronomy",
- "interpretable-machine-learning",
- "machine-learning",
- "spectroscopy"
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+ "cmake"
]
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+ "rel": "/software/repository/github/CMakePP/CMinx",
+ "avatar": "https://avatars.githubusercontent.com/u/44040020?v=4",
+ "description": "Generates API documentation for CMake functions and macros",
"topics": [
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- "network-analysis",
- "sociology",
- "visualization",
- "text-analysis",
- "text-as-data",
- "computational-social-science"
+ "cmake",
+ "documentation-tool"
]
},
{
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+ "avatar": "https://avatars.githubusercontent.com/u/4146628?v=4",
+ "description": "Python code for Stellar Population Inference from Spectra and SEDs",
"topics": [
- "amrex"
+ "stellar-population-properties",
+ "fitting"
]
},
{
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- "description": "The fqar package provides R tools for downloading and analyzing floristic quality assessment data from www.universalFQA.org",
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+ "description": "Generative modeling galaxy photometry for JWST",
"topics": []
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+ "rel": "/software/repository/github/bd-j/sedpy",
+ "avatar": "https://avatars.githubusercontent.com/u/4146628?v=4",
+ "description": "Utilities for astronomical spectral energy distributions",
+ "topics": []
+ },
+ {
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+ "rel": "/software/repository/github/ledatelescope/bifrost",
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+ "description": "A stream processing framework for high-throughput applications.",
"topics": [
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- "astrophysics",
- "gravitational-waves",
- "kilonovae",
- "multi-messenger",
+ "gpu",
+ "pipeline",
"python",
- "sampling-methods"
+ "cpp",
+ "bifrost",
+ "high-throughput-computing",
+ "high-performance-computing",
+ "astronomy",
+ "radio-astronomy",
+ "cuda"
]
},
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- "avatar": "https://avatars.githubusercontent.com/u/10519363?v=4",
- "description": "Perturbation theory with \"fk\"-Kernels",
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+ "rel": "/software/repository/github/SebOliver/PCA",
+ "avatar": "https://avatars.githubusercontent.com/u/8169971?v=4",
+ "description": "The folders in this file are those discussed in the paper: \"Principal Component Analysis and Radiative Transfer modelling of Spitzer IRS Spectra of Ultra Luminous Infrared Galaxies \" Hurley et al. 2012 Monthly Notices of the Royal Astronomical Society, 424 (3). pp. 2069-2078. ISSN 0035-8711 ",
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- "avatar": "https://avatars.githubusercontent.com/u/114988409?v=4",
- "description": null,
+ "uid": "github/Ge-Lab/USAT",
+ "url": "https://github.com/Ge-Lab/USAT",
+ "rel": "/software/repository/github/Ge-Lab/USAT",
+ "avatar": "https://avatars.githubusercontent.com/u/103397680?v=4",
+ "description": "USAT is a software for analyzing and visualizing the Tandem Repeat (TR) alleles",
"topics": []
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- "url": "https://github.com/ebmonson/2DFFTUtils-Module",
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- "description": "A Python module implementation of some tasks associated with measuring spiral galaxy pitch angle with 2DFFT. To be merged into the 2dfft_utils repository at a later date. TODO: Rename package and repository to SpiralUtils.",
+ "uid": "github/tripod-code/tripodpy",
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+ "rel": "/software/repository/github/tripod-code/tripodpy",
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- "description": "ReQTL: Identifying correlations between expressed SNVs and gene expression using RNA-sequencing data",
- "topics": []
+ "uid": "github/idem-lab/conmat",
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+ "rel": "/software/repository/github/idem-lab/conmat",
+ "avatar": "https://avatars.githubusercontent.com/u/146308556?v=4",
+ "description": "Create Contact Matrices from Population Data",
+ "topics": [
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+ "population-data",
+ "r",
+ "public-health",
+ "infectious-diseases"
+ ]
},
{
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- "description": "Reference implementation of the Graph Exchange File Format",
- "topics": []
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+ "avatar": "https://avatars.githubusercontent.com/u/69278530?v=4",
+ "description": "MC/DC: Monte Carlo Dynamic Code",
+ "topics": [
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+ "monte-carlo-simulation",
+ "neutron-transport",
+ "neutronics",
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+ "particle-transport",
+ "radiation-transport",
+ "parallel",
+ "python",
+ "simulation"
+ ]
},
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+ "avatar": "https://avatars.githubusercontent.com/u/14996753?v=4",
+ "description": "REDCap in Python",
+ "topics": [
+ "redcap",
+ "python",
+ "redcap-api",
+ "redcap-package"
+ ]
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{
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- "description": "This Python package is designed for mapping the solution space of machine learning models. An understanding of the organisation of the solution space can answer important questions about the reproducibility, explainability and performance of ML methods.",
- "topics": []
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+ "url": "https://github.com/metagentools/gbintk",
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+ "description": "\ud83c\udf1f\ud83e\uddec GraphBin-Tk: assembly graph-based metagenomic binning toolkit",
+ "topics": [
+ "contigs",
+ "metagenomics",
+ "metagenomic-binning",
+ "assembly-graph",
+ "bioinformatics"
+ ]
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- "description": "computational tools for the spectroscopic analysis of white dwarfs",
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+ "avatar": "https://avatars.githubusercontent.com/u/67157284?v=4",
+ "description": "Repository on the collaborative IVADO medical imaging project between the Mila and NeuroPoly labs.",
"topics": []
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- "avatar": "https://avatars.githubusercontent.com/u/77590457?v=4",
- "description": "Julia package for quantum circuit simulation using tensor networks",
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+ "url": "https://github.com/gdefazio/kMetaShot",
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"topics": []
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- "avatar": "https://avatars.githubusercontent.com/u/349384?v=4",
- "description": "Sky offset optimization and mosaicing toolkit used by ANDROIDS",
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+ "url": "https://github.com/nppackages/lpcde",
+ "rel": "/software/repository/github/nppackages/lpcde",
+ "avatar": "https://avatars.githubusercontent.com/u/69351622?v=4",
+ "description": " R implementation of bandwidth selection, point estimation and inference procedures for local polynomial conditional distribution and density methods.",
"topics": []
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- "url": "https://github.com/jonathansick/MoAstro",
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- "avatar": "https://avatars.githubusercontent.com/u/349384?v=4",
- "description": "MongoDB framework for observational astronomy",
+ "uid": "github/PRIS-CV/DS-UI",
+ "url": "https://github.com/PRIS-CV/DS-UI",
+ "rel": "/software/repository/github/PRIS-CV/DS-UI",
+ "avatar": "https://avatars.githubusercontent.com/u/64245328?v=4",
+ "description": "DS-UI: Dual-Supervised Mixture of Gaussian Mixture Models for Uncertainty Inference in Image Recognition (IEEE TIP 2021)",
"topics": []
},
{
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- "avatar": "https://avatars.githubusercontent.com/u/349384?v=4",
- "description": "GitHub StarFISH mirror (with patches)",
+ "uid": "github/niemasd/CoaTran",
+ "url": "https://github.com/niemasd/CoaTran",
+ "rel": "/software/repository/github/niemasd/CoaTran",
+ "avatar": "https://avatars.githubusercontent.com/u/4195510?v=4",
+ "description": "CoaTran: Coalescent tree simulation along a transmission network",
"topics": []
},
{
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- "url": "https://github.com/grd349/PBjam",
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- "avatar": "https://avatars.githubusercontent.com/u/14784265?v=4",
- "description": "A repo for our peak baggin code and tips on jam",
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+ "url": "https://github.com/BlueBrain/BlueCelluLab",
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+ "avatar": "https://avatars.githubusercontent.com/u/1479142?v=4",
+ "description": "Biologically detailed neural network simulations and analysis API",
+ "topics": [
+ "biology",
+ "brain",
+ "cell",
+ "neural-network",
+ "neuron",
+ "neuroscience",
+ "python",
+ "simulation",
+ "circuit",
+ "emodel",
+ "api",
+ "connection",
+ "network"
+ ]
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- "description": "Python code for calculating non-parametric morphological diagnostics of galaxy images.",
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+ "avatar": "https://avatars.githubusercontent.com/u/8990486?v=4",
+ "description": "2-pt correlation function estimation",
+ "topics": []
+ },
+ {
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+ "url": "https://github.com/NLESC-JCER/Fortran_Davidson",
+ "rel": "/software/repository/github/NLESC-JCER/Fortran_Davidson",
+ "avatar": "https://avatars3.githubusercontent.com/u/44467875?v=4",
+ "description": "Davidson eigensolver implemented in Fortran",
"topics": [
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- "galaxies",
- "galaxy-morphology",
- "non-parametric"
+ "eigenvalues",
+ "linear-algebra",
+ "davidson-eigensolver",
+ "modern-fortran",
+ "research-and-development"
]
},
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- "description": "Rust package that calculates sequence complexity from FastQ file",
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+ "url": "https://github.com/NLESC-JCER/QMCTorch",
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+ "avatar": "https://avatars.githubusercontent.com/u/44467875?v=4",
+ "description": "Pytorch Implementation of Real Space Quantum Monte Carlo Simulations of Molecular Systems",
"topics": []
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- "avatar": "https://avatars.githubusercontent.com/u/84804829?v=4",
+ "uid": "github/NLESC-JCER/QMCblip",
+ "url": "https://github.com/NLESC-JCER/QMCblip",
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- "species-assignments",
- "phylogenetics",
- "archaea",
- "bacteria",
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- "bioinformatics",
- "metagenomics"
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+ "digital-humanities",
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+ "radio-telescope",
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+ "telescope",
+ "astronomy",
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+ "rf",
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+ "avatar": "https://avatars.githubusercontent.com/u/6764007?v=4",
+ "description": "A generic flux/parameter population synthesis code",
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+ "simulation",
+ "statistics",
+ "population-synthesis",
+ "astrophysics",
+ "astronomy"
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- "description": "Normalized Additional Velocity analysis",
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+ "avatar": "https://avatars.githubusercontent.com/u/6764007?v=4",
+ "description": "GRB triangulation via non-stationary time-series models",
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+ "localization",
+ "random-fourier-features",
+ "non-parametric-inference",
+ "time-series-analysis",
+ "stan",
+ "fermi"
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+ "avatar": "https://avatars.githubusercontent.com/u/6764007?v=4",
+ "description": "Implements synchrotron emission from cooling electrons",
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- "redshift",
- "pca-redshift",
- "chi2",
- "pixel",
- "galaxy",
- "quasar"
+ "gamma-ray-astronomy",
+ "synchrotron",
+ "chang-cooper",
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+ "rel": "/software/repository/github/grburgess/polarpy",
+ "avatar": "https://avatars.githubusercontent.com/u/6764007?v=4",
+ "description": "Tools for polar",
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- "thermodynamics",
- "reaction",
- "chemical",
- "mixture",
- "properties",
- "vapor-liquid-equilibrium",
- "material-and-energy-balance",
- "chemical-engineering",
- "equations-of-state",
- "liquid-liquid-equilibrium"
+ "polarization",
+ "polarization-data",
+ "grb",
+ "data-analysis",
+ "3ml"
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+ "rel": "/software/repository/github/grburgess/ronswanson",
+ "avatar": "https://avatars.githubusercontent.com/u/6764007?v=4",
+ "description": "Ron Swanson builds tables for 3ML",
"topics": [
- "graph",
- "graph-algorithms",
- "matlab",
- "network-analysis"
+ "3ml",
+ "astromodels",
+ "data-analysis",
+ "interpolation",
+ "python",
+ "ron-swanson",
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+ "avatar": "https://avatars.githubusercontent.com/u/8590076?v=4",
+ "description": "Positive-pressure medical ventilator system using Simscape\u2122",
+ "topics": []
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+ "description": "A package that provides the generated ANTLR4 WDL parsers for Python.",
+ "topics": []
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- "radio-frequency-interference",
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- "lofar",
- "meerkat",
- "rfi-mitigation",
- "rfi-removal",
- "satellite",
- "ska-telescope",
- "gpu"
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+ "cosmology",
+ "python",
+ "spherical-harmonics",
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+ "avatar": "https://avatars.githubusercontent.com/u/10554710?v=4",
+ "description": "Tools for fast and flexible genome assembly scaffolding and improvement",
"topics": [
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- "transcriptomics",
- "bioinformatics"
+ "genome-assembly",
+ "scaffolding",
+ "gap-filling"
]
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+ "deduplication"
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- "python",
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+ "uid": "github/Health-RI/img2catalog",
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+ "avatar": "https://avatars.githubusercontent.com/u/80106593?v=4",
+ "description": "Repository for a tool to help make XNAT into a FAIR Data Point",
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+ "description": "Particle-in-Cell code using the implicit moment method",
+ "topics": []
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+ "description": "Python Request Engine for Virtual Interferometric Survey",
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+ "observational-data"
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+ "taxonomic-information"
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+ "avatar": "https://avatars.githubusercontent.com/u/999745?v=4",
+ "description": "A Python library for reading and writing PacBio\u00ae data files",
"topics": []
},
{
- "uid": "github/vinayakdasgupta/anvay",
- "url": "https://github.com/vinayakdasgupta/anvay",
- "rel": "/software/repository/github/vinayakdasgupta/anvay",
- "avatar": "https://avatars.githubusercontent.com/u/8538894?v=4",
- "description": "anvay is a Flask-based Bengali text processing and topic modeling tool that uses Latent Dirichlet Allocation (LDA) to extract topics from uploaded text files.",
+ "uid": "github/PacificBiosciences/pbalign",
+ "url": null,
+ "rel": "/software/repository/github/PacificBiosciences/pbalign",
+ "avatar": "",
+ "description": "pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format. The output Compare HDF5 file will be compatible with Quiver if --forQuiver option is specified.",
+ "topics": []
+ },
+ {
+ "uid": "github/PacificBiosciences/minorseq",
+ "url": "https://github.com/PacificBiosciences/minorseq",
+ "rel": "/software/repository/github/PacificBiosciences/minorseq",
+ "avatar": "https://avatars.githubusercontent.com/u/999745?v=4",
+ "description": "Minor Variant Calling and Phasing Tools",
"topics": [
- "lda",
- "bengali",
- "digital-humanities",
- "flask",
- "gensim",
- "text-analysis",
- "topic-modelling"
+ "minor-variant",
+ "haplotypes",
+ "phasing",
+ "drug-resistance",
+ "statistics",
+ "next-generation-sequencing",
+ "long-read",
+ "pacbio"
]
},
{
- "uid": "github/dewberryjanosz/polyrot",
- "url": "https://github.com/dewberryjanosz/polyrot",
- "rel": "/software/repository/github/dewberryjanosz/polyrot",
- "avatar": "https://avatars.githubusercontent.com/u/54084498?v=4",
- "description": "A small package for computing polytropic models of rapidly rotating planets and stars",
+ "uid": "github/PacificBiosciences/pbmm2",
+ "url": "https://github.com/PacificBiosciences/pbmm2",
+ "rel": "/software/repository/github/PacificBiosciences/pbmm2",
+ "avatar": "https://avatars.githubusercontent.com/u/999745?v=4",
+ "description": "A minimap2 frontend for PacBio native data formats",
"topics": []
},
{
- "uid": "github/hjozwiak-umk/bigos_h2he",
- "url": "https://github.com/hjozwiak-umk/bigos_h2he",
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- "avatar": "https://avatars.githubusercontent.com/u/70630776?v=4",
- "description": "the SCATTERING code from the BIGOS package adjusted for diatom-atom calculations",
+ "uid": "github/PacificBiosciences/blasr",
+ "url": null,
+ "rel": "/software/repository/github/PacificBiosciences/blasr",
+ "avatar": "",
+ "description": "BLASR (Basic Local Alignment with Successive Refinement) maps Single Molecule Sequencing (SMS) reads that are thousands of bases long, with divergence between the read and genome dominated by insertion and deletion error.",
"topics": []
},
{
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- "url": "https://github.com/sapearson/HSS",
- "rel": "/software/repository/github/sapearson/HSS",
- "avatar": "https://avatars.githubusercontent.com/u/6550771?v=4",
- "description": "The Hough Stream Spotter (HSS)",
+ "uid": "github/PacificBiosciences/HiPhase",
+ "url": "https://github.com/PacificBiosciences/HiPhase",
+ "rel": "/software/repository/github/PacificBiosciences/HiPhase",
+ "avatar": "https://avatars.githubusercontent.com/u/999745?v=4",
+ "description": "Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads",
+ "topics": [
+ "hifi",
+ "phasing",
+ "structural-variants",
+ "variants",
+ "pacbio-data",
+ "short-tandem-repeats"
+ ]
+ },
+ {
+ "uid": "github/PacificBiosciences/kineticsTools",
+ "url": "https://github.com/PacificBiosciences/kineticsTools",
+ "rel": "/software/repository/github/PacificBiosciences/kineticsTools",
+ "avatar": "https://avatars.githubusercontent.com/u/999745?v=4",
+ "description": "Tools for detecting DNA modifications from single molecule, real-time sequencing data",
"topics": []
},
{
- "uid": "github/nlesc-nano/CAT",
- "url": "https://github.com/nlesc-nano/CAT",
- "rel": "/software/repository/github/nlesc-nano/CAT",
- "avatar": "https://avatars0.githubusercontent.com/u/49066803?v=4",
- "description": "A collection of tools designed for the automatic construction, and subsequent analysis, of chemical compounds.",
- "topics": [
- "quantum-mechanics",
- "science",
- "chemistry",
- "automation",
- "scientific-workflows",
- "python-3-7",
- "molecular-mechanics",
- "python-3-6",
- "python-3-8"
- ]
+ "uid": "github/PacificBiosciences/FALCON",
+ "url": "https://github.com/PacificBiosciences/FALCON",
+ "rel": "/software/repository/github/PacificBiosciences/FALCON",
+ "avatar": "https://avatars.githubusercontent.com/u/999745?v=4",
+ "description": "FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries",
+ "topics": []
},
{
- "uid": "github/nlesc-nano/ceiba",
- "url": "https://github.com/nlesc-nano/ceiba",
- "rel": "/software/repository/github/nlesc-nano/ceiba",
- "avatar": "https://avatars.githubusercontent.com/u/49066803?v=4",
- "description": "Web service to manage scientific simulation data",
+ "uid": "github/PacificBiosciences/IsoSeq",
+ "url": "https://github.com/PacificBiosciences/IsoSeq",
+ "rel": "/software/repository/github/PacificBiosciences/IsoSeq",
+ "avatar": "https://avatars.githubusercontent.com/u/999745?v=4",
+ "description": "IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads",
"topics": [
- "scientific-computing",
- "web-service",
- "python",
- "graphql",
- "workflow-automation"
+ "pacbio",
+ "rna",
+ "clustering",
+ "polishing",
+ "isoforms",
+ "discovery"
]
},
{
- "uid": "github/nlesc-nano/flamingo",
- "url": "https://github.com/nlesc-nano/flamingo",
- "rel": "/software/repository/github/nlesc-nano/flamingo",
- "avatar": "https://avatars0.githubusercontent.com/u/49066803?v=4",
- "description": "Computation and filtering of molecular properties",
- "topics": [
- "quantum-chemistry",
- "nanomaterials",
- "insilico",
- "molecular-simulation"
- ]
+ "uid": "github/PacificBiosciences/pbbioconda",
+ "url": "https://github.com/PacificBiosciences/pbbioconda",
+ "rel": "/software/repository/github/PacificBiosciences/pbbioconda",
+ "avatar": "https://avatars.githubusercontent.com/u/999745?v=4",
+ "description": "PacBio Secondary Analysis Tools on Bioconda",
+ "topics": []
},
{
- "uid": "github/nlesc-nano/Moka",
- "url": "https://github.com/nlesc-nano/Moka",
- "rel": "/software/repository/github/nlesc-nano/Moka",
- "avatar": "https://avatars0.githubusercontent.com/u/49066803?v=4",
- "description": "command line interface to compute and molecular properties from a database",
+ "uid": "github/PacificBiosciences/pbcopper",
+ "url": "https://github.com/PacificBiosciences/pbcopper",
+ "rel": "/software/repository/github/PacificBiosciences/pbcopper",
+ "avatar": "https://avatars.githubusercontent.com/u/999745?v=4",
+ "description": "Core C++ library for data structures, algorithms, and utilities",
"topics": []
},
{
- "uid": "github/nlesc-nano/insilico-server",
- "url": "https://github.com/nlesc-nano/insilico-server",
- "rel": "/software/repository/github/nlesc-nano/insilico-server",
- "avatar": "https://avatars0.githubusercontent.com/u/49066803?v=4",
- "description": "web server to handle the properties",
+ "uid": "github/PacificBiosciences/pbbam",
+ "url": "https://github.com/PacificBiosciences/pbbam",
+ "rel": "/software/repository/github/PacificBiosciences/pbbam",
+ "avatar": "https://avatars.githubusercontent.com/u/999745?v=4",
+ "description": "PacBio BAM C++ library",
"topics": []
},
{
- "uid": "github/nlesc-nano/swan",
- "url": "https://github.com/nlesc-nano/swan",
- "rel": "/software/repository/github/nlesc-nano/swan",
- "avatar": "https://avatars0.githubusercontent.com/u/49066803?v=4",
- "description": "Screening Workflows And statistical models to predict new materials",
+ "uid": "github/somefunAgba/NLSIG-COVID19Lab",
+ "url": "https://github.com/somefunAgba/NLSIG-COVID19Lab",
+ "rel": "/software/repository/github/somefunAgba/NLSIG-COVID19Lab",
+ "avatar": "https://avatars.githubusercontent.com/u/6755741?v=4",
+ "description": "A nlogistic-sigmoid playground for modelling the COVID-19 pandemic growth",
"topics": [
- "material-science",
- "quantum-chemistry",
+ "covid-19",
+ "neural-networks",
"machine-learning",
- "python"
+ "growth-process",
+ "epidemiology",
+ "logistic-regression",
+ "optimization",
+ "matlab",
+ "yir",
+ "deaths",
+ "infections",
+ "logistic-metrics",
+ "peak"
]
},
{
- "uid": "github/nlesc-nano/ceiba-cli",
- "url": "https://github.com/nlesc-nano/ceiba-cli",
- "rel": "/software/repository/github/nlesc-nano/ceiba-cli",
- "avatar": "https://avatars.githubusercontent.com/u/49066803?v=4",
- "description": "command-line interface to compute and molecular properties from a database",
+ "uid": "github/trevorgokey/besmarts",
+ "url": "https://github.com/trevorgokey/besmarts",
+ "rel": "/software/repository/github/trevorgokey/besmarts",
+ "avatar": "https://avatars.githubusercontent.com/u/50244806?v=4",
+ "description": "A toolkit for data-driven force field design based on binary-encoded SMARTS",
"topics": [
- "command-line",
- "web-service",
- "client"
+ "cheminformatics",
+ "smarts",
+ "forcefields"
]
},
{
- "uid": "github/nombac/optab",
- "url": "https://github.com/nombac/optab",
- "rel": "/software/repository/github/nombac/optab",
- "avatar": "https://avatars.githubusercontent.com/u/38897846?v=4",
- "description": "Public Fortran90 code package for generating ideal-gas opacity tables",
+ "uid": "github/LiyrAstroph/PIXON",
+ "url": "https://github.com/LiyrAstroph/PIXON",
+ "rel": "/software/repository/github/LiyrAstroph/PIXON",
+ "avatar": "https://avatars.githubusercontent.com/u/22761518?v=4",
+ "description": "a pixon-based method for reverberation mapping analysis in active galactic nuclei",
"topics": []
},
{
- "uid": "github/kmlefran/aiida-aimall",
- "url": "https://github.com/kmlefran/aiida-aimall",
- "rel": "/software/repository/github/kmlefran/aiida-aimall",
- "avatar": "https://avatars.githubusercontent.com/u/138684774?v=4",
- "description": null,
+ "uid": "github/LiyrAstroph/PyCALI",
+ "url": "https://github.com/LiyrAstroph/PyCALI",
+ "rel": "/software/repository/github/LiyrAstroph/PyCALI",
+ "avatar": "https://avatars.githubusercontent.com/u/22761518?v=4",
+ "description": "A Python package to intercalibrate light curves. ",
"topics": []
},
{
- "uid": "github/multiply-org/sar-pre-processing",
- "url": "https://github.com/multiply-org/sar-pre-processing",
- "rel": "/software/repository/github/multiply-org/sar-pre-processing",
- "avatar": "https://avatars.githubusercontent.com/u/22216958?v=4",
- "description": "This is the MULTIPLY repository containing the functionality for SAR pre processing.",
+ "uid": "github/LiyrAstroph/RECON",
+ "url": "https://github.com/LiyrAstroph/RECON",
+ "rel": "/software/repository/github/LiyrAstroph/RECON",
+ "avatar": "https://avatars.githubusercontent.com/u/22761518?v=4",
+ "description": "A method for measuring spectral power and reconstructing time series in active galactic nuclei",
"topics": []
},
{
- "uid": "github/Qiskit/qiskit-experiments",
- "url": "https://github.com/Qiskit/qiskit-experiments",
- "rel": "/software/repository/github/Qiskit/qiskit-experiments",
- "avatar": "https://avatars.githubusercontent.com/u/30696987?v=4",
- "description": "Qiskit Experiments",
- "topics": [
- "qiskit"
- ]
+ "uid": "github/LiyrAstroph/BRAINS",
+ "url": "https://github.com/LiyrAstroph/BRAINS",
+ "rel": "/software/repository/github/LiyrAstroph/BRAINS",
+ "avatar": "https://avatars.githubusercontent.com/u/22761518?v=4",
+ "description": "A package for dynamically modeling broad-line regions in active galactic nucleus, analyzing reverberation-mapping and spectro-astrometric data, and measuring the central black hole mass",
+ "topics": []
},
{
- "uid": "github/Qiskit/rustworkx",
- "url": "https://github.com/Qiskit/rustworkx",
- "rel": "/software/repository/github/Qiskit/rustworkx",
- "avatar": "https://avatars.githubusercontent.com/u/30696987?v=4",
- "description": "A high performance Python graph library implemented in Rust.",
+ "uid": "github/LiyrAstroph/Spartan",
+ "url": "https://github.com/LiyrAstroph/Spartan",
+ "rel": "/software/repository/github/LiyrAstroph/Spartan",
+ "avatar": "https://avatars.githubusercontent.com/u/22761518?v=4",
+ "description": "A code to calculate the structure and spectrum of advection-dominated accretion flows (ADAFs)",
+ "topics": []
+ },
+ {
+ "uid": "github/j-faria/kima",
+ "url": "https://github.com/j-faria/kima",
+ "rel": "/software/repository/github/j-faria/kima",
+ "avatar": "https://avatars.githubusercontent.com/u/1958991?v=4",
+ "description": "Exoplanet detection in RVs with DNest4 and GPs",
"topics": [
- "graph",
- "dag",
- "rust",
- "python",
- "graph-theory",
+ "exoplanets",
+ "radial-velocity",
+ "bayesian",
+ "gaussian-processes",
"hacktoberfest"
]
},
{
- "uid": "github/ci-for-science/self-hosted-runners",
- "url": "https://github.com/ci-for-research/self-hosted-runners",
- "rel": "/software/repository/github/ci-for-science/self-hosted-runners",
- "avatar": "https://avatars3.githubusercontent.com/u/67105980?v=4",
- "description": "Recipe to install and configure a GitHub action runner using Ansible",
- "topics": [
- "continuous-integration",
- "github-actions"
- ]
+ "uid": "github/chrishales/pieflag",
+ "url": "https://github.com/chrishales/pieflag",
+ "rel": "/software/repository/github/chrishales/pieflag",
+ "avatar": "https://avatars.githubusercontent.com/u/8146490?v=4",
+ "description": "CASA task to flag bad data by drawing upon statistics from reference channels in bandpass-calibrated data",
+ "topics": []
+ },
+ {
+ "uid": "github/ahwkuepper/mcluster",
+ "url": "https://github.com/ahwkuepper/mcluster",
+ "rel": "/software/repository/github/ahwkuepper/mcluster",
+ "avatar": "https://avatars.githubusercontent.com/u/4366828?v=4",
+ "description": "McLuster - a tool to make a star cluster",
+ "topics": []
},
{
- "uid": "github/mjrfringes/haystacks",
- "url": "https://github.com/mjrfringes/haystacks",
- "rel": "/software/repository/github/mjrfringes/haystacks",
- "avatar": "https://avatars.githubusercontent.com/u/13844169?v=4",
+ "uid": "github/GENtle-persons/gentle-m",
+ "url": "https://github.com/GENtle-persons/gentle-m",
+ "rel": "/software/repository/github/GENtle-persons/gentle-m",
+ "avatar": "https://avatars.githubusercontent.com/u/141044235?v=4",
"description": null,
"topics": []
},
{
- "uid": "github/saphir746/BiobankRead-Bash",
- "url": "https://github.com/saphir746/BiobankRead-Bash",
- "rel": "/software/repository/github/saphir746/BiobankRead-Bash",
- "avatar": "https://avatars.githubusercontent.com/u/11505614?v=4",
- "description": "Python scripts to extract and pre-process UKB data",
- "topics": []
+ "uid": "github/e-merlin/eMERLIN_CASA_pipeline",
+ "url": "https://github.com/e-merlin/eMERLIN_CASA_pipeline",
+ "rel": "/software/repository/github/e-merlin/eMERLIN_CASA_pipeline",
+ "avatar": "https://avatars.githubusercontent.com/u/26597493?v=4",
+ "description": "This is CASA eMERLIN pipeline to calibrate data from the e-MERLIN array. Please fork the repository before making any changes and read the Coding Practices page in the wiki. Please add issues with the pipeline in the issues tab.",
+ "topics": [
+ "radio-astronomy"
+ ]
},
{
- "uid": "github/grahambell/pymoc",
- "url": "https://github.com/grahambell/pymoc",
- "rel": "/software/repository/github/grahambell/pymoc",
- "avatar": "https://avatars.githubusercontent.com/u/1649796?v=4",
- "description": "Multi-Order Coverage map module for Python",
+ "uid": "github/bbbbbbzhou/MDPET",
+ "url": "https://github.com/bbbbbbzhou/MDPET",
+ "rel": "/software/repository/github/bbbbbbzhou/MDPET",
+ "avatar": "https://avatars.githubusercontent.com/u/61164038?v=4",
+ "description": "MDPET: A Unified Motion Correction and Denoising Adversarial Network for Low-dose Gated PET (IEEE Transactions on Medical Imaging, 2021)",
"topics": []
},
{
- "uid": "github/kmkuesters/pooledpeaks",
- "url": "https://github.com/kmkuesters/pooledpeaks",
- "rel": "/software/repository/github/kmkuesters/pooledpeaks",
- "avatar": "https://avatars.githubusercontent.com/u/75321402?v=4",
- "description": "The Pooled Peaks Package Developed by the Blanton Lab as part of Kathleen Kuesters' Dissertation",
+ "uid": "github/apcamargo/prodigal-gv",
+ "url": "https://github.com/apcamargo/prodigal-gv",
+ "rel": "/software/repository/github/apcamargo/prodigal-gv",
+ "avatar": "https://avatars.githubusercontent.com/u/22940964?v=4",
+ "description": "A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes",
"topics": []
},
{
- "uid": "github/NarlikarLab/exoDIVERSITY",
- "url": "https://github.com/NarlikarLab/exoDIVERSITY",
- "rel": "/software/repository/github/NarlikarLab/exoDIVERSITY",
- "avatar": "https://avatars.githubusercontent.com/u/14049800?v=4",
- "description": null,
+ "uid": "github/vincentvaneylen/k2photometry",
+ "url": "https://github.com/vincentvaneylen/k2photometry",
+ "rel": "/software/repository/github/vincentvaneylen/k2photometry",
+ "avatar": "https://avatars.githubusercontent.com/u/11032500?v=4",
+ "description": "Read, reduce and detrend K2 photometry and search for transiting planets",
"topics": []
},
{
- "uid": "github/cran/irtplay",
- "url": "https://github.com/cran/irtplay",
- "rel": "/software/repository/github/cran/irtplay",
- "avatar": "https://avatars.githubusercontent.com/u/6899542?v=4",
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+ "uid": "github/bxskdh/TSTA",
+ "url": "https://github.com/bxskdh/TSTA",
+ "rel": "/software/repository/github/bxskdh/TSTA",
+ "avatar": "https://avatars.githubusercontent.com/u/137745769?v=4",
+ "description": "pairwise and multiple sequence alignment accelerated by simd and threads",
"topics": []
},
{
- "uid": "github/hyriver/hysetter",
- "url": "https://github.com/hyriver/hysetter",
- "rel": "/software/repository/github/hyriver/hysetter",
- "avatar": "https://avatars.githubusercontent.com/u/109259800?v=4",
- "description": "A command-line tool for getting hydroclimate data within CONUS using HyRiver",
+ "uid": "github/floodlight-sports/floodlight",
+ "url": "https://github.com/floodlight-sports/floodlight",
+ "rel": "/software/repository/github/floodlight-sports/floodlight",
+ "avatar": "https://avatars.githubusercontent.com/u/92793483?v=4",
+ "description": "Python package for streamlined analysis of sports data.",
"topics": [
- "climate-data",
- "daymet",
- "gridmet",
- "hydrology",
- "nldas",
- "nwis"
+ "python",
+ "sports-analytics",
+ "sports-stats"
]
},
{
- "uid": "github/StephenJHardy/SL1M",
- "url": "https://github.com/StephenJHardy/SL1M",
- "rel": "/software/repository/github/StephenJHardy/SL1M",
- "avatar": "https://avatars.githubusercontent.com/u/4343871?v=4",
- "description": "Radio Synthesis Deconvolution using L1 Minimisation",
+ "uid": "github/jiwoncpark/baobab",
+ "url": "https://github.com/jiwoncpark/baobab",
+ "rel": "/software/repository/github/jiwoncpark/baobab",
+ "avatar": "https://avatars.githubusercontent.com/u/15166916?v=4",
+ "description": "Generates the training data for hierarchical inference of strongly-lensed systems with Bayesian neural networks",
+ "topics": [
+ "lenstronomy",
+ "bayesian-neural-networks",
+ "hierarchical-bayesian-analysis",
+ "strong-lensing"
+ ]
+ },
+ {
+ "uid": "github/GalacticDynamics-Oxford/Agama",
+ "url": "https://github.com/GalacticDynamics-Oxford/Agama",
+ "rel": "/software/repository/github/GalacticDynamics-Oxford/Agama",
+ "avatar": "https://avatars.githubusercontent.com/u/9365694?v=4",
+ "description": "Action-based galaxy modeling framework",
"topics": []
},
{
- "uid": "github/debbiemarkslab/plmc",
- "url": "https://github.com/debbiemarkslab/plmc",
- "rel": "/software/repository/github/debbiemarkslab/plmc",
- "avatar": "https://avatars.githubusercontent.com/u/8976419?v=4",
- "description": "Inference of couplings in proteins and RNAs from sequence variation",
+ "uid": "github/dftd3/simple-dftd3",
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+ "description": "Tool for analysing BLAST output for ncRNA sequences",
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+ "blast",
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+ "description": "Rapid sensitive and accurate read mapping via quasi-mapping",
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+ "description": "An efficient index for the colored, compacted, de Bruijn graph",
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- "asv",
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- "amplicon-pipeline",
- "taxonomy",
- "phyloseq",
- "metabarcoding"
+ "debruijn-graph",
+ "debruijn",
+ "index",
+ "hash",
+ "contigs",
+ "genome",
+ "dbg"
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+ "description": "\ud83d\udc1f \ud83d\udd2c\ud83e\udd80 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.",
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- "simulation",
- "chemical-reaction-networks",
- "crn",
- "stochastic-simulation-algorithm",
- "python",
- "cython",
- "parameter-identification"
+ "single-cell",
+ "rust",
+ "transcriptomics",
+ "rna-seq",
+ "single-cell-rna-seq",
+ "quantification",
+ "10x"
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- "description": "The physical activity analysis toolbox (PAAT) is a comprehensive toolbox to analyse raw acceleration data from the hip.",
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+ "description": "enables the discovery of data-driven, robust transcript groups from RNA-seq data.",
"topics": [
- "physical-activity",
- "actigraphy",
- "actigraph",
- "accelerometry",
- "hip"
+ "rna-seq",
+ "transcriptomics",
+ "gene-expression"
]
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+ "description": "\ud83d\udc1f \ud83c\udf63 \ud83c\udf71 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment",
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- "tipping-point",
- "autocorrelation",
- "power-spectrum",
- "bootstrapping",
- "complex-systems",
- "python",
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+ "quasi-mapping",
+ "bioinformatics",
+ "rna-seq",
+ "rnaseq",
+ "salmon",
+ "quantification",
+ "sailfish",
+ "c-plus-plus",
+ "gene-expression",
+ "scrna-seq",
+ "single-cell",
+ "10x",
+ "selective-alignment",
+ "rna-seq-quantification",
+ "single-cell-rna-seq",
+ "transcriptome"
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- "description": "Discovery And Vetting of K2 Exoplanets",
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+ "avatar": "https://avatars.githubusercontent.com/u/45973167?v=4",
+ "description": "Python pipeline to generate mock astrometric and photometric catalogs of synthetic stars derived from particle-based simulated star populations",
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+ "rel": "/software/repository/github/uclchem/Chemulator",
+ "avatar": "https://avatars.githubusercontent.com/u/14346619?v=4",
+ "description": "The thermochemical emulator for hydrodynamical modelling",
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- "description": "Diffusive Nested Sampling",
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+ "description": "A Python library for spectral modelling and RADEX",
+ "topics": [
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+ "radiative-transfer",
+ "radex",
+ "astronomy",
+ "python"
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{
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+ "avatar": "https://avatars.githubusercontent.com/u/99480879?v=4",
+ "description": ":snake: Python framework for Nek5000 :rocket:",
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+ "python",
+ "nek5000",
+ "snek5000",
+ "fluidsim",
+ "snakemake",
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+ "workflow"
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+ "url": "https://github.com/DataverseLabs/pyinterpolate",
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+ "avatar": "https://avatars.githubusercontent.com/u/84904952?v=4",
+ "description": "Package with spatial analysis and spatial prediction tools",
+ "topics": [
+ "kriging",
+ "semivariogram",
+ "spatial-interpolation",
+ "spatial-analysis",
+ "poisson-kriging",
+ "hacktoberfest",
+ "python",
+ "machine-learning"
+ ]
},
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+ "avatar": "https://avatars.githubusercontent.com/u/497246?v=4",
+ "description": "The (non) famous ASTROnomical POlarimetry and Photometry pipeline",
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+ "pipeline",
+ "photometry-pipeline",
+ "scipy",
+ "astropy-affiliated",
+ "astrometry",
+ "astronomy",
+ "polarimetry"
+ ]
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+ "description": "reference-guided aligner for next-generation sequencing technologies",
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- "description": "An API for the Polarizable Continuum Model",
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+ "avatar": "https://avatars.githubusercontent.com/u/34315578?v=4",
+ "description": "Exoplanet Detection Map Calculator ",
"topics": []
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- "reconstruction",
- "python"
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+ "uid": "github/DochtermannLab/BehavioralHeritability",
+ "url": "https://github.com/DochtermannLab/BehavioralHeritability",
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+ "avatar": "https://avatars.githubusercontent.com/u/47366531?v=4",
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- "description": "A Python/C++ package for three-point clustering measurements in LSS analyses",
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+ "description": "Blobby3D is a tool to perform Bayesian inference for gas kinematics on emission line observations of galaxies using Integral Field Spectroscopy.",
"topics": [
- "python",
- "cpp",
- "cosmology",
- "cython"
+ "astrophysics",
+ "bayesian-inference",
+ "spectroscopy"
]
},
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+ "description": "FastVPINNs - A tensor-driven acceleration of VPINNs for complex geometries",
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- "cosmological-inference",
- "large-scale-structure-cosmology"
+ "deep-learning",
+ "inverse-problems",
+ "neural-network",
+ "partial-differential-equations",
+ "physics-informed-neural-networks",
+ "pinn",
+ "scientific-machine-learning",
+ "tensorflow2"
]
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+ "description": "Accelerated Reionization Era Simulations",
"topics": [
- "astronomy",
- "sonification"
+ "21-cm-cosmology",
+ "galaxy-formation",
+ "reionization",
+ "cosmic-dawn",
+ "intensity-mapping"
]
},
{
- "uid": "github/spacetelescope/stsdas_stripped",
- "url": "https://github.com/spacetelescope/stsdas_stripped",
- "rel": "/software/repository/github/spacetelescope/stsdas_stripped",
- "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
- "description": "STSDAS/TABLES (nonfunctional / for reference only)",
+ "uid": "github/mirochaj/sedop",
+ "url": "https://github.com/mirochaj/sedop",
+ "rel": "/software/repository/github/mirochaj/sedop",
+ "avatar": "https://avatars.githubusercontent.com/u/3018135?v=4",
+ "description": "Code for optimizing discrete versions of common SEDs.",
"topics": []
},
{
- "uid": "github/spacetelescope/specviz",
- "url": "https://github.com/spacetelescope/specviz",
- "rel": "/software/repository/github/spacetelescope/specviz",
- "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
- "description": "An interactive astronomical 1D spectra analysis tool.",
- "topics": [
- "astronomy",
- "spectroscopy",
- "viewer",
- "data-analysis",
- "python"
- ]
+ "uid": "github/MSABuschmann/sledgehamr",
+ "url": "https://github.com/MSABuschmann/sledgehamr",
+ "rel": "/software/repository/github/MSABuschmann/sledgehamr",
+ "avatar": "https://avatars.githubusercontent.com/u/22368016?v=4",
+ "description": "Sledgehamr is an AMReX-based code package to simulate the dynamics of coupled scalar fields on a 3-dimensional adaptive mesh.",
+ "topics": []
},
{
- "uid": "github/spacetelescope/pystortion",
- "url": "https://github.com/spacetelescope/pystortion",
- "rel": "/software/repository/github/spacetelescope/pystortion",
- "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
+ "uid": "github/WatsonLab/MAGpy",
+ "url": "https://github.com/WatsonLab/MAGpy",
+ "rel": "/software/repository/github/WatsonLab/MAGpy",
+ "avatar": "https://avatars.githubusercontent.com/u/29977047?v=4",
+ "description": "Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)",
+ "topics": []
+ },
+ {
+ "uid": "github/el2718/FastQSL",
+ "url": "https://github.com/el2718/FastQSL",
+ "rel": "/software/repository/github/el2718/FastQSL",
+ "avatar": "https://avatars.githubusercontent.com/u/45861675?v=4",
"description": null,
"topics": []
},
{
- "uid": "github/spacetelescope/hst_cosmic_rays",
- "url": "https://github.com/spacetelescope/hst_cosmic_rays",
- "rel": "/software/repository/github/spacetelescope/hst_cosmic_rays",
- "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
+ "uid": "github/frarei312/ExceS-A-An-Exon-Centric-Split-Aligner",
+ "url": "https://github.com/frarei312/ExceS-A-An-Exon-Centric-Split-Aligner",
+ "rel": "/software/repository/github/frarei312/ExceS-A-An-Exon-Centric-Split-Aligner",
+ "avatar": "https://avatars.githubusercontent.com/u/52074443?v=4",
"description": null,
"topics": []
},
{
- "uid": "github/spacetelescope/stsynphot_refactor",
- "url": "https://github.com/spacetelescope/stsynphot_refactor",
- "rel": "/software/repository/github/spacetelescope/stsynphot_refactor",
- "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
- "description": "Synthetic photometry using Astropy for HST and JWST",
+ "uid": "github/jcibanezm/DustCharge",
+ "url": "https://github.com/jcibanezm/DustCharge",
+ "rel": "/software/repository/github/jcibanezm/DustCharge",
+ "avatar": "https://avatars.githubusercontent.com/u/3493686?v=4",
+ "description": "Calculate the equilibrium charge distribution for a dust grain of a given size and composition, depending on the local interstellar medium conditions, such as: density, temperature, ionization fraction, local radiation field strength and cosmic ray ionization fraction.",
+ "topics": []
+ },
+ {
+ "uid": "github/imcgreer/simqso",
+ "url": "https://github.com/imcgreer/simqso",
+ "rel": "/software/repository/github/imcgreer/simqso",
+ "avatar": "https://avatars.githubusercontent.com/u/9142924?v=4",
+ "description": "Module for generating simulated quasar spectra",
+ "topics": []
+ },
+ {
+ "uid": "github/nekokoe/Plasmer",
+ "url": "https://github.com/nekokoe/Plasmer",
+ "rel": "/software/repository/github/nekokoe/Plasmer",
+ "avatar": "https://avatars.githubusercontent.com/u/3713987?v=4",
+ "description": "An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.",
"topics": [
- "astronomy",
- "python",
- "astropy",
- "synthetic-photometry",
- "synphot",
- "hst",
- "jwst"
+ "bioinformatics",
+ "plasmid"
]
},
{
- "uid": "github/spacetelescope/stginga",
- "url": "https://github.com/spacetelescope/stginga",
- "rel": "/software/repository/github/spacetelescope/stginga",
- "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
- "description": "Ginga products specific to STScI data analysis.",
+ "uid": "github/mxwalbert/cohesivm",
+ "url": "https://github.com/mxwalbert/cohesivm",
+ "rel": "/software/repository/github/mxwalbert/cohesivm",
+ "avatar": "https://avatars.githubusercontent.com/u/84664695?v=4",
+ "description": "Combinatorial h+/e- Sample Investigation using Voltaic Measurements",
"topics": [
- "astronomy",
- "image",
- "table",
- "viewer",
- "astropy",
- "ginga"
+ "lab-automation",
+ "materials-science",
+ "python",
+ "combinatorial-approach",
+ "high-throughput-analysis"
]
},
{
- "uid": "github/spacetelescope/synphot_refactor",
- "url": "https://github.com/spacetelescope/synphot_refactor",
- "rel": "/software/repository/github/spacetelescope/synphot_refactor",
- "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
- "description": "Synthetic photometry using Astropy",
+ "uid": "github/difuture-lmu/dsBinVal",
+ "url": "https://github.com/difuture-lmu/dsBinVal",
+ "rel": "/software/repository/github/difuture-lmu/dsBinVal",
+ "avatar": "https://avatars.githubusercontent.com/u/82653878?v=4",
+ "description": "ROC-GLM and calibration analysis for DataSHIELD",
"topics": [
- "astronomy",
- "astropy",
- "synthetic-photometry",
- "python",
- "synphot"
+ "auc",
+ "calibration",
+ "datashield",
+ "distributed-computing",
+ "roc"
]
},
{
- "uid": "github/spacetelescope/jdaviz",
- "url": "https://github.com/spacetelescope/jdaviz",
- "rel": "/software/repository/github/spacetelescope/jdaviz",
- "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
- "description": "JWST astronomical data analysis tools in the Jupyter platform",
+ "uid": "github/lemene/PECAT",
+ "url": "https://github.com/lemene/PECAT",
+ "rel": "/software/repository/github/lemene/PECAT",
+ "avatar": "https://avatars.githubusercontent.com/u/22316379?v=4",
+ "description": "PECAT, a phased error correct and assembly tool",
"topics": []
},
{
- "uid": "github/spacetelescope/imexam",
- "url": "https://github.com/spacetelescope/imexam",
- "rel": "/software/repository/github/spacetelescope/imexam",
- "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
- "description": "imexam is a python tool for simple image examination, and plotting, with similar functionality to IRAF's imexamine",
+ "uid": "github/tesselle/aion",
+ "url": "https://github.com/tesselle/aion",
+ "rel": "/software/repository/github/tesselle/aion",
+ "avatar": "https://avatars.githubusercontent.com/u/78033555?v=4",
+ "description": ":stopwatch: Archaeological Time Series",
"topics": [
- "astronomy",
- "data-analysis",
- "viewer",
- "astropy",
- "ds9",
- "ginga"
+ "archaeological-science",
+ "archaeology",
+ "r-package",
+ "chronology",
+ "time-series"
]
},
{
- "uid": "github/spacetelescope/exovetter",
- "url": "https://github.com/spacetelescope/exovetter",
- "rel": "/software/repository/github/spacetelescope/exovetter",
- "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
- "description": "Exoplanet vetting",
+ "uid": "github/cpinte/mcfost",
+ "url": "https://github.com/cpinte/mcfost",
+ "rel": "/software/repository/github/cpinte/mcfost",
+ "avatar": "https://avatars.githubusercontent.com/u/4163533?v=4",
+ "description": "MCFOST radiative transfer code",
"topics": [
"astronomy",
- "exoplanets",
- "verification",
- "exoplanet-transits"
+ "astrophysics",
+ "astrophysical-simulation",
+ "radiative-transfer",
+ "fortran"
]
},
{
- "uid": "github/spacetelescope/spaceKLIP",
- "url": "https://github.com/spacetelescope/spaceKLIP",
- "rel": "/software/repository/github/spacetelescope/spaceKLIP",
- "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
- "description": "Pipeline for reducing JWST high-contrast imaging data. Published in Kammerer et al. 2022 and Carter et al. 2022.",
+ "uid": "github/cpinte/pymcfost",
+ "url": "https://github.com/cpinte/pymcfost",
+ "rel": "/software/repository/github/cpinte/pymcfost",
+ "avatar": "https://avatars.githubusercontent.com/u/4163533?v=4",
+ "description": "python interface to the 3D radiative transfer code mcfost",
"topics": []
},
{
- "uid": "github/spacetelescope/specview",
- "url": "https://github.com/spacetelescope/specview",
- "rel": "/software/repository/github/spacetelescope/specview",
- "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
- "description": "Archived, see https://github.com/spacetelescope/specviz for future development. Spectrum visualization, manipulation, and fitting",
- "topics": [
- "spectroscopy",
- "astronomy",
- "viewer",
- "data-analysis"
- ]
- },
- {
- "uid": "github/spacetelescope/mirage",
- "url": "https://github.com/spacetelescope/mirage",
- "rel": "/software/repository/github/spacetelescope/mirage",
- "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
- "description": "This code can be used to generate simulated NIRCam, NIRISS, or FGS data ",
- "topics": [
- "astronomy",
- "simulator",
- "nircam",
- "niriss",
- "fgs"
- ]
- },
- {
- "uid": "github/ZJUFanLab/bulk2space",
- "url": "https://github.com/ZJUFanLab/bulk2space",
- "rel": "/software/repository/github/ZJUFanLab/bulk2space",
- "avatar": "https://avatars.githubusercontent.com/u/53822310?v=4",
- "description": "a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell expression profiles",
- "topics": [
- "bulk-sequencing",
- "deep-learning",
- "scrna-seq",
- "spatial-transcriptomics"
- ]
+ "uid": "github/cpinte/casa_cube",
+ "url": "https://github.com/cpinte/casa_cube",
+ "rel": "/software/repository/github/cpinte/casa_cube",
+ "avatar": "https://avatars.githubusercontent.com/u/4163533?v=4",
+ "description": "python tool to display and analysis astronomical data cubes",
+ "topics": []
},
{
- "uid": "github/ZJUFanLab/scTITANS",
- "url": "https://github.com/ZJUFanLab/scTITANS",
- "rel": "/software/repository/github/ZJUFanLab/scTITANS",
- "avatar": "https://avatars.githubusercontent.com/u/53822310?v=4",
- "description": "Identifying key genes and cell subclusters for time-series single cell sequencing data",
+ "uid": "github/rhpvorderman/sequali",
+ "url": "https://github.com/rhpvorderman/sequali",
+ "rel": "/software/repository/github/rhpvorderman/sequali",
+ "avatar": "https://avatars.githubusercontent.com/u/26142226?v=4",
+ "description": "Fast sequencing data quality metrics",
"topics": [
- "single-cell-rna-seq",
- "time-series-analysis"
+ "bam",
+ "fastq",
+ "illumina",
+ "nanopore",
+ "qc",
+ "quality-control"
]
},
{
- "uid": "github/OpenHPS/openhps-core",
- "url": "https://github.com/OpenHPS/openhps-core",
- "rel": "/software/repository/github/OpenHPS/openhps-core",
- "avatar": "https://avatars.githubusercontent.com/u/64551958?v=4",
- "description": "OpenHPS: Core Component",
+ "uid": "github/avigan/SPHERE",
+ "url": "https://github.com/avigan/SPHERE",
+ "rel": "/software/repository/github/avigan/SPHERE",
+ "avatar": "https://avatars.githubusercontent.com/u/29944664?v=4",
+ "description": "Reduction and analysis code for the VLT/SPHERE instrument",
"topics": []
},
{
- "uid": "github/ppmim/PAPI4K",
- "url": "https://github.com/ppmim/PAPI4K",
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- "avatar": "https://avatars.githubusercontent.com/u/44784?v=4",
- "description": "PANIC data reduction pipeline",
- "topics": [
- "data",
- "infra-red",
- "processing",
- "python"
- ]
- },
- {
- "uid": "github/erikhom/aida",
- "url": "https://github.com/erikhom/aida",
- "rel": "/software/repository/github/erikhom/aida",
- "avatar": "https://avatars.githubusercontent.com/u/4625918?v=4",
- "description": "Code for the Adaptive Image Deconvolution Algorithm (AIDA) of Hom et al. (2007) J. Opt. Soc. Amer. A",
+ "uid": "github/avigan/pyZELDA",
+ "url": "https://github.com/avigan/pyZELDA",
+ "rel": "/software/repository/github/avigan/pyZELDA",
+ "avatar": "https://avatars.githubusercontent.com/u/29944664?v=4",
+ "description": "Zernike wavefront sensor analysis and simulation tools",
"topics": []
},
{
- "uid": "github/HingeAssembler/HINGE",
- "url": "https://github.com/HingeAssembler/HINGE",
- "rel": "/software/repository/github/HingeAssembler/HINGE",
- "avatar": "https://avatars.githubusercontent.com/u/26515746?v=4",
- "description": "Software accompanying \"HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution\"",
+ "uid": "github/Trybnetic/paat",
+ "url": "https://github.com/Trybnetic/paat",
+ "rel": "/software/repository/github/Trybnetic/paat",
+ "avatar": "https://avatars.githubusercontent.com/u/7532062?v=4",
+ "description": "The physical activity analysis toolbox (PAAT) is a comprehensive toolbox to analyse raw acceleration data from the hip.",
"topics": [
- "genome-assembly"
+ "physical-activity",
+ "actigraphy",
+ "actigraph",
+ "accelerometry",
+ "hip"
]
},
{
- "uid": "github/NextGenCMB/lensitbiases",
- "url": "https://github.com/NextGenCMB/lensitbiases",
- "rel": "/software/repository/github/NextGenCMB/lensitbiases",
- "avatar": "https://avatars.githubusercontent.com/u/72163365?v=4",
- "description": "rfft-based flat-sky CMB lensing tools",
+ "uid": "github/ziyewang/ARG_SHINE",
+ "url": "https://github.com/ziyewang/ARG_SHINE",
+ "rel": "/software/repository/github/ziyewang/ARG_SHINE",
+ "avatar": "https://avatars.githubusercontent.com/u/37959011?v=4",
+ "description": null,
"topics": []
},
{
- "uid": "github/ecological-cities/home2park",
- "url": "https://github.com/ecological-cities/home2park",
- "rel": "/software/repository/github/ecological-cities/home2park",
- "avatar": "https://avatars.githubusercontent.com/u/65454754?v=4",
- "description": "home2park: Assess the spatial provision of urban parks",
- "topics": [
- "cities",
- "recreation",
- "parks",
- "geoinformatics",
- "spatial"
- ]
+ "uid": "github/ziyewang/MetaBinner",
+ "url": "https://github.com/ziyewang/MetaBinner",
+ "rel": "/software/repository/github/ziyewang/MetaBinner",
+ "avatar": "https://avatars.githubusercontent.com/u/37959011?v=4",
+ "description": null,
+ "topics": []
},
{
- "uid": "github/pni-lab/mlconfound",
- "url": "https://github.com/pni-lab/mlconfound",
- "rel": "/software/repository/github/pni-lab/mlconfound",
- "avatar": "https://avatars.githubusercontent.com/u/53299837?v=4",
- "description": "Tools for analyzing and quantifying effects of counfounder variables on machine learning model predictions.",
- "topics": [
- "confounders",
- "machine-learning",
- "predictive-modeling",
- "permutation-test",
- "conditional-independence"
- ]
+ "uid": "github/liushang17/AEnet",
+ "url": "https://github.com/liushang17/AEnet",
+ "rel": "/software/repository/github/liushang17/AEnet",
+ "avatar": "https://avatars.githubusercontent.com/u/34593951?v=4",
+ "description": "This study constructs two new methods to study alternative splicing events at the single-cell level, namely DESJ-detection and AEN. DESJ-detection can detect alternative splicing differences at the single-cell level. AEN can not only systematically analyze the relationship between alternative splicing events and cell states, but also detect alternative splicing events in the process of cell state changes. At the same time, AEN also optimized the ability of DESJ-detection to detect differential alternative splicing.",
+ "topics": []
},
{
- "uid": "github/onnela-lab/beiwe-backend",
- "url": "https://github.com/onnela-lab/beiwe-backend",
- "rel": "/software/repository/github/onnela-lab/beiwe-backend",
- "avatar": "https://avatars.githubusercontent.com/u/12967946?v=4",
- "description": "Beiwe is a smartphone-based digital phenotyping research platform. This is the Beiwe backend code",
+ "uid": "github/mmp2/megaman",
+ "url": "https://github.com/mmp2/megaman",
+ "rel": "/software/repository/github/mmp2/megaman",
+ "avatar": "https://avatars.githubusercontent.com/u/5679461?v=4",
+ "description": "megaman: Manifold Learning for Millions of Points ",
"topics": []
},
{
- "uid": "github/miniufo/xinvert",
- "url": "https://github.com/miniufo/xinvert",
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- "avatar": "https://avatars.githubusercontent.com/u/9312831?v=4",
- "description": "Invert geophysical fluid dynamic problems (elliptic partial differential equations) using SOR iteration method.",
+ "uid": "github/neuroneural/brainchop",
+ "url": "https://github.com/neuroneural/brainchop",
+ "rel": "/software/repository/github/neuroneural/brainchop",
+ "avatar": "https://avatars.githubusercontent.com/u/77679632?v=4",
+ "description": "Brainchop: In-browser 3D MRI rendering and segmentation",
"topics": [
- "successive-over-relaxation",
- "inversion-problem",
- "atmospheric-science",
- "oceanography",
- "meteorology",
- "omega-equation",
- "gill-matsuno-model",
- "munk-stommel",
- "wind-driven-circulation",
- "eliassen-model",
- "pv-inversion",
- "streamfunction",
- "velocity-potential",
- "geophysical-fluid-dynamics",
- "poisson-equation"
+ "deep-learning",
+ "3d-segmentation",
+ "frontend-app",
+ "javascript",
+ "neuroimaging",
+ "pyodide",
+ "tensorflowjs",
+ "three-js",
+ "medical-imaging",
+ "mri",
+ "mri-segmentation"
]
},
{
- "uid": "github/qiangyicheng/flory",
- "url": "https://github.com/qiangyicheng/flory",
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- "avatar": "https://avatars.githubusercontent.com/u/47470964?v=4",
- "description": "Python package for finding coexisting phases in multicomponent mixtures.",
+ "uid": "github/AntoineDarveau/jwst",
+ "url": "https://github.com/AntoineDarveau/jwst",
+ "rel": "/software/repository/github/AntoineDarveau/jwst",
+ "avatar": "https://avatars.githubusercontent.com/u/25065082?v=4",
+ "description": "Python library for science observations from the James Webb Space Telescope ",
"topics": []
},
{
- "uid": "github/FitSNAP/FitSNAP",
- "url": "https://github.com/FitSNAP/FitSNAP",
- "rel": "/software/repository/github/FitSNAP/FitSNAP",
- "avatar": "https://avatars.githubusercontent.com/u/55246404?v=4",
- "description": "Software for generating SNAP machine-learning interatomic potentials",
+ "uid": "github/LSSTDESC/snmachine",
+ "url": "https://github.com/LSSTDESC/snmachine",
+ "rel": "/software/repository/github/LSSTDESC/snmachine",
+ "avatar": "https://avatars.githubusercontent.com/u/2731443?v=4",
+ "description": "Machine learning code for photometric supernova classification",
"topics": []
},
{
- "uid": "github/hpgem/nanomesh",
- "url": "https://github.com/hpgem/nanomesh",
- "rel": "/software/repository/github/hpgem/nanomesh",
- "avatar": "https://avatars.githubusercontent.com/u/50169972?v=4",
- "description": "Python workflow tool for generating meshes from 2D and 3D microscopy image data",
+ "uid": "github/LSSTDESC/WeakLensingDeblending",
+ "url": "https://github.com/LSSTDESC/WeakLensingDeblending",
+ "rel": "/software/repository/github/LSSTDESC/WeakLensingDeblending",
+ "avatar": "https://avatars.githubusercontent.com/u/2731443?v=4",
+ "description": "Weak lensing fast simulations and analysis of blended objects.",
"topics": [
- "meshing",
- "microscopy",
- "python",
- "jupyter",
- "image-processing"
+ "astronomy",
+ "python"
]
},
{
- "uid": "github/project-asgard/asgard",
- "url": "https://github.com/project-asgard/asgard",
- "rel": "/software/repository/github/project-asgard/asgard",
- "avatar": "https://avatars.githubusercontent.com/u/50125104?v=4",
- "description": null,
+ "uid": "github/LSSTDESC/NaMaster",
+ "url": "https://github.com/LSSTDESC/NaMaster",
+ "rel": "/software/repository/github/LSSTDESC/NaMaster",
+ "avatar": "https://avatars.githubusercontent.com/u/2731443?v=4",
+ "description": "A unified pseudo-Cl framework",
"topics": []
},
{
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- "url": "https://github.com/lumen-org/lumen",
- "rel": "/software/repository/github/lumen-org/lumen",
- "avatar": "https://avatars.githubusercontent.com/u/43880697?v=4",
- "description": "Interactive web application for the exploration, comparision and validation of probability models and its data",
+ "uid": "github/LSSTDESC/BlendingToolKit",
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+ "rel": "/software/repository/github/LSSTDESC/BlendingToolKit",
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- "description": "JupyterLab extension to aid in searching and publishing of Nanopublications in a python notebook",
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- "chromatin",
- "chromosomes",
- "hi-c"
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+ "segmentation",
+ "cavities",
+ "convolutional-neural-networks",
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+ "agn-feedback"
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- "multi-fidelity",
- "benchmark-functions",
- "benchmark-suite",
- "benchmarking-suite",
- "python"
+ "data-processing",
+ "high-contrast-imaging",
+ "low-rank-approximation",
+ "image-processing",
+ "extrasolar-planets-disks",
+ "pca",
+ "mcmc"
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- "description": "[IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long reads",
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+ "avatar": "https://avatars.githubusercontent.com/u/266180814?v=4",
+ "description": "\u26d3 Correct misassemblies using linked AND long reads",
+ "topics": [
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+ "genome-scaffolding",
+ "genome-assembly",
+ "linked-reads",
+ "10xgenomics",
+ "bioinformatics",
+ "bioinformatics-tool"
+ ]
+ },
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+ "description": "least common ancestor evaluation given tax database and ",
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+ "avatar": "https://avatars.githubusercontent.com/u/6567968?v=4",
+ "description": "Code for estimating realistic masses and uncertainties from M_Ks (2MASS Ks + distance)",
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- "description": "This project shows how to create a compilation project for MFront properties, behaviours and models",
+ "uid": "github/amkrajewski/nimCSO",
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+ "avatar": "https://avatars.githubusercontent.com/u/54290107?v=4",
+ "description": "nim Composition Space Optimization is a high-performance tool leveraging metaprogramming to implement several methods for selecting components (data dimensions) in compositional datasets, as to optimize the data availability and density for applications such as machine learning.",
"topics": [
- "heat-transfer",
- "material-properties",
- "solid-mechanics",
- "material-knowledge-management",
- "mfront"
+ "data-analysis",
+ "data-optimization",
+ "data-science",
+ "materials-informatics",
+ "metaprogramming",
+ "nim",
+ "nim-lang"
]
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{
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- "description": "CLustering UnsupErvised with Sequencer: A fully interpretable clustering tool for analyzing spectral data ",
+ "uid": "github/jacobmerson/model-traits",
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+ "description": "simple library for dealing with simulation boundary conditions",
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- "javascript",
- "go",
- "js",
- "rpg-dice-roller",
- "julia",
- "r",
- "java",
- "haskell"
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+ "uid": "github/AdriaJ/polyclean",
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+ "avatar": "https://avatars.githubusercontent.com/u/43072455?v=4",
+ "description": "PolyCLEAN algorithm for radio interferometric imaging, based on Polyatomic Frank-Wolfe.",
+ "topics": []
},
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- "topics": [
- "esa",
- "heliophysics",
- "spacephysics",
- "spaceweather"
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+ "uid": "github/optimusmoose/jsms",
+ "url": "https://github.com/optimusmoose/jsms",
+ "rel": "/software/repository/github/optimusmoose/jsms",
+ "avatar": "https://avatars2.githubusercontent.com/u/1541778?v=4",
+ "description": "A modular JavaScript viewer for mass spectrometry data",
+ "topics": []
+ },
+ {
+ "uid": "github/parallelwindfarms/byteparsing",
+ "url": "https://github.com/parallelwindfarms/byteparsing",
+ "rel": "/software/repository/github/parallelwindfarms/byteparsing",
+ "avatar": "https://avatars.githubusercontent.com/u/45036415?v=4",
+ "description": "Parser for mixed binary/ASCII data in Python",
+ "topics": []
},
{
- "uid": "github/exoclim/aeolus",
- "url": "https://github.com/exoclim/aeolus",
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- "python-library",
- "atmospheric-science",
- "planetary-science",
- "exoplanets",
- "atmospheric-modelling",
- "climate-model"
- ]
+ "uid": "github/evolbioinfo/bdei",
+ "url": "https://github.com/evolbioinfo/bdei",
+ "rel": "/software/repository/github/evolbioinfo/bdei",
+ "avatar": "https://avatars.githubusercontent.com/u/25950370?v=4",
+ "description": "Birth-Death Exposed-Infectious (BDEI) model parameter inference from phylogenetic trees",
+ "topics": []
},
{
- "uid": "github/genostats/LowKi",
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- "description": null,
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+ "avatar": "https://avatars.githubusercontent.com/u/25950370?v=4",
+ "description": "Birth-death epidemiological parameter estimator accounting for partner notification",
"topics": []
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{
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- "description": "runs as a two-step process. First cluster_identifier is used to generate soft-clipped read cluster consensus sequences. Second, SCRAMBle-MEIs.R analyzes the cluster file for likely Mobile Element Insertions.",
+ "uid": "github/evolbioinfo/treesimulator",
+ "url": "https://github.com/evolbioinfo/treesimulator",
+ "rel": "/software/repository/github/evolbioinfo/treesimulator",
+ "avatar": "https://avatars.githubusercontent.com/u/25950370?v=4",
+ "description": null,
"topics": []
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{
- "uid": "github/wangsiwei2010/FPMVS-CAG",
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- "description": "code of \"Fast Parameter-free Multi-view Subspace Clustering with Consensus Anchor Guidance \" published in IEEE TIP2022",
+ "uid": "github/evolbioinfo/bdct",
+ "url": "https://github.com/evolbioinfo/bdct",
+ "rel": "/software/repository/github/evolbioinfo/bdct",
+ "avatar": "https://avatars.githubusercontent.com/u/25950370?v=4",
+ "description": "Birth-death epidemiological parameter estimator accounting for partner notification",
"topics": []
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- "description": "IQmol is an open source molecular editor and visualization package",
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+ "url": "https://github.com/baxmittens/VTUFileHandler.jl",
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+ "avatar": "https://avatars.githubusercontent.com/u/100423479?v=4",
+ "description": "A VTU library in the Julia language that implements an algebra for basic mathematical operations on VTU data.",
"topics": []
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{
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- "topics": [
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- "molecular-dynamics",
- "molecular-dynamics-simulation",
- "mosdef-hub",
- "polymer",
- "simulation"
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+ "uid": "github/baxmittens/OpenGeoSysUncertaintyQuantification.jl",
+ "url": "https://github.com/baxmittens/OpenGeoSysUncertaintyQuantification.jl",
+ "rel": "/software/repository/github/baxmittens/OpenGeoSysUncertaintyQuantification.jl",
+ "avatar": "https://avatars.githubusercontent.com/u/100423479?v=4",
+ "description": "An uncertainty quantification toolbox for OpenGeoSys 6",
+ "topics": []
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- "description": "A Python package to calculate and visualize some popular drought indices such as the SPI, SPEI and SGI.",
+ "uid": "github/martinlackner/abcvoting",
+ "url": "https://github.com/martinlackner/abcvoting",
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+ "avatar": "https://avatars.githubusercontent.com/u/46762723?v=4",
+ "description": "Python implementations of approval-based committee (multi-winner) voting rules",
"topics": [
- "drought",
- "groundwater",
- "hydrology",
+ "voting",
"python",
- "sgi",
- "spei",
- "timeseries",
- "spi",
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- "drought-indices"
+ "research",
+ "social-choice",
+ "social-choice-theory",
+ "multiwinnervoting",
+ "approval-voting",
+ "voting-methods",
+ "committee"
]
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+ "avatar": "https://avatars.githubusercontent.com/u/5146962?v=4",
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"topics": []
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- "editing",
- "pixels",
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- "thematic-maps"
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+ "uid": "github/ZhantianXu/PISAD",
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+ "avatar": "https://avatars.githubusercontent.com/u/125952645?v=4",
+ "description": "PISAD: reference-free intraspecies sample anomalies detetion tool based on k-mer counting ",
+ "topics": []
},
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- "description": "Code for the paper Implicit Weight Uncertainty in Neural Networks",
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+ "avatar": "https://avatars.githubusercontent.com/u/13270645?v=4",
+ "description": "Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling",
"topics": [
"deep-learning",
- "variational-inference",
- "deep-neural-networks",
- "tensorflow",
- "bayesian-neural-networks"
+ "variant-calling",
+ "computational-biology",
+ "nanopore",
+ "long-reads",
+ "genomics",
+ "ont-data",
+ "ont-models",
+ "illumina",
+ "pacbio",
+ "variant-detection"
]
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- "machine-learning",
- "python",
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+ "uid": "github/ouyang-lab/PRAS",
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+ "avatar": "https://avatars2.githubusercontent.com/u/44652339?v=4",
+ "description": "PRAS: predicting functional targets of RNA binding proteins based on CLIP-seq peaks",
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- "description": "FAMED (Fast and AutoMated pEak bagging with DIAMONDS) - Pipeline",
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+ "description": "The binary Black Hole explorer (visualizations)",
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+ "uid": "github/stemangiola/tidyHeatmap",
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+ "avatar": "https://avatars2.githubusercontent.com/u/7232890?v=4",
+ "description": "Draw heatmap simply using a tidy data frame",
+ "topics": [
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+ "r",
+ "rstudio",
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+ "tidy-data-frame",
+ "graphviz",
+ "complexheatmap",
+ "brewer",
+ "viridis",
+ "scale",
+ "mtcars",
+ "dplyr",
+ "custom-palette",
+ "tidybulk",
+ "tibble"
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+ "distributed",
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]
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+ "alarms",
+ "convolutional-neural-network",
+ "dataset",
+ "psychoacoustics",
+ "occupational-noise"
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+ "data-analysis",
+ "microscopy-images",
+ "nano-particles"
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+ "uvit-data",
+ "ultraviolet",
+ "variability",
+ "python",
+ "science",
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+ "astrosat",
+ "uvit",
+ "light-curves",
+ "instrument-coordinate"
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- "pangenome-growth",
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+ "topics": []
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+ "avatar": "https://avatars.githubusercontent.com/u/12879105?v=4",
+ "description": "Lightweight, general, scalable C++ library for finite element methods",
+ "topics": [
+ "finite-elements",
+ "high-order",
+ "high-performance-computing",
+ "parallel-computing",
+ "amr",
+ "computational-science",
+ "fem",
+ "scientific-computing",
+ "hpc",
+ "math-physics",
+ "radiuss"
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"topics": [
- "spectral-types",
- "metallicity",
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+ "fmri-preprocessing",
"python",
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+ "neuroimaging",
+ "brain-imaging",
+ "fmri-roi-analysis"
]
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+ "avatar": "https://avatars.githubusercontent.com/u/10499259?v=4",
+ "description": "forward reconstruction of lenses and sources from strong lensing observations",
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"astronomy",
- "data-analysis"
+ "gravitational-lensing",
+ "astrophysics",
+ "opencl",
+ "gpgpu"
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+ "avatar": "https://avatars.githubusercontent.com/u/48957123?v=4",
+ "description": "spam is a Python 3 package, used to search for imprints of Hu-Sawicki f(R) gravity in the rotation curves of the SPARC sample.",
+ "topics": []
+ },
+ {
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+ "description": "Efficient random sampling via linear interpolation.",
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+ "python",
+ "random-generation",
+ "statistics",
+ "random-sampling",
+ "low-discrepancy-sequence"
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- "description": "\ud83e\udd86 Quality Control of WGS and exome samples \ud83e\udd86",
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+ "web-application"
]
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+ "description": "Precision Based Sample Size Calculation",
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+ "description": "QC Check Tool for Metabolomics",
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+ "metabolomics",
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+ "orbitrap",
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- "description": "Shell scripts for spectral-timing analysis of X-ray astronomical data.",
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+ "url": "https://github.com/mrc-ide/PlasmoMAPI",
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+ "avatar": "https://avatars.githubusercontent.com/u/25453642?v=4",
+ "description": "Mapping Plasmodium Spatial Connectivity from Genetic Data",
"topics": []
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+ "rel": "/software/repository/github/mrc-ide/individual",
+ "avatar": "https://avatars.githubusercontent.com/u/25453642?v=4",
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"topics": [
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+ "r",
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+ "epidemiology",
+ "agent-based-modeling",
+ "individual-based-modelling",
+ "infectious-diseases"
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+ "description": "This is the COVID-19 CovidSim microsimulation model developed by the MRC Centre for Global Infectious Disease Analysis hosted at Imperial College, London.",
+ "topics": []
+ },
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+ "avatar": "https://avatars.githubusercontent.com/u/25453642?v=4",
+ "description": "PhyDyn: Epidemiological modelling in BEAST",
+ "topics": []
+ },
+ {
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+ "url": "https://github.com/mrc-ide/global-lmic-reports-orderly",
+ "rel": "/software/repository/github/mrc-ide/global-lmic-reports-orderly",
+ "avatar": "https://avatars.githubusercontent.com/u/25453642?v=4",
+ "description": "COVID-19 forecast reports for LMICs",
"topics": []
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- "data-science",
- "drug-discovery",
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+ "uid": "github/mrc-ide/sircovid",
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- "description": "GOLEM: distribution of Gene regulatOry eLEMents within the plant promoters",
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+ "rel": "/software/repository/github/mrc-ide/drjacoby",
+ "avatar": "https://avatars.githubusercontent.com/u/25453642?v=4",
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"topics": []
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- "description": "library aimed at scientists who want a simple tool to help log research computations",
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+ "rel": "/software/repository/github/mrc-ide/EpiEstim",
+ "avatar": "https://avatars.githubusercontent.com/u/25453642?v=4",
+ "description": "A tool to estimate time varying instantaneous reproduction number during epidemics",
+ "topics": []
+ },
+ {
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+ "url": "https://github.com/mrc-ide/cinterpolate",
+ "rel": "/software/repository/github/mrc-ide/cinterpolate",
+ "avatar": "https://avatars.githubusercontent.com/u/25453642?v=4",
+ "description": ":bar_chart::arrow_right::wavy_dash: Interpolating functions from C, in R",
"topics": [
- "logging-library",
- "reproducible-research",
- "science"
+ "infrastructure"
]
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- "avatar": "https://avatars.githubusercontent.com/u/54967899?v=4",
- "description": "Tools for analysis of sequence divergence",
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+ "url": "https://github.com/mrc-ide/provisionr",
+ "rel": "/software/repository/github/mrc-ide/provisionr",
+ "avatar": "https://avatars.githubusercontent.com/u/25453642?v=4",
+ "description": ":package::package::arrow_right::classical_building: Provision a library of R packages",
"topics": [
- "bioinformatics",
- "phylogenetics"
+ "infrastructure",
+ "cluster"
]
},
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- "avatar": "https://avatars.githubusercontent.com/u/7572527?v=4",
- "description": "WDL workflows to build genetic maps from sequencing reads",
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+ "rel": "/software/repository/github/mrc-ide/odin",
+ "avatar": "https://avatars.githubusercontent.com/u/25453642?v=4",
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"topics": [
- "genotyping-by-sequencing",
- "haplotypes",
- "linkage-mapping",
- "pipelines",
- "variant-calling",
- "wdl"
+ "infrastructure"
]
},
{
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- "description": "Code to calculate the sensitivity of a ground-based instrument for astronomy at mid-infrared wavelengths (3-15 micron). Written for the METIS instrument for the E-ELT but easily customisable.",
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+ "url": "https://github.com/mrc-ide/squire",
+ "rel": "/software/repository/github/mrc-ide/squire",
+ "avatar": "https://avatars.githubusercontent.com/u/25453642?v=4",
+ "description": "SEIR transmission model of COVID-19. Documentation at:",
"topics": []
},
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- "avatar": "https://avatars.githubusercontent.com/u/225201?v=4",
- "description": "Code to calculate correlation functions for two (astrophysical) catalogue datasets",
+ "uid": "github/mrc-ide/dde",
+ "url": "https://github.com/mrc-ide/dde",
+ "rel": "/software/repository/github/mrc-ide/dde",
+ "avatar": "https://avatars.githubusercontent.com/u/25453642?v=4",
+ "description": ":clock1130::soon::clock9: Delay differential equation solver",
"topics": []
},
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- "description": "C++ Library for reading and writing CIFTI-2 and CIFTI-1 files",
+ "uid": "github/mrc-ide/covid19-forecasts-orderly",
+ "url": "https://github.com/mrc-ide/covid19-forecasts-orderly",
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+ "avatar": "https://avatars.githubusercontent.com/u/25453642?v=4",
+ "description": null,
+ "topics": []
+ },
+ {
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+ "url": "https://github.com/mrc-ide/rrq",
+ "rel": "/software/repository/github/mrc-ide/rrq",
+ "avatar": "https://avatars.githubusercontent.com/u/25453642?v=4",
+ "description": ":runner::runner::runner: Lightweight Redis queues",
"topics": [
- "c-plus-plus",
- "cifti",
- "nifti"
+ "infrastructure",
+ "cluster"
]
},
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- "description": "GPP, a generic preprocessor",
+ "uid": "github/mrc-ide/dust",
+ "url": "https://github.com/mrc-ide/dust",
+ "rel": "/software/repository/github/mrc-ide/dust",
+ "avatar": "https://avatars.githubusercontent.com/u/25453642?v=4",
+ "description": ":sparkles::sparkles::sparkles: Iterate multiple realisations of stochastic models",
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- "description": "SciKit-Learn compatible library for training mixed-effects models.",
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+ "url": "https://github.com/yfperezg/frisbhee",
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- "bioinformatics",
- "bioinformatics-tool",
- "sequence-alignment-visualization",
- "blast-search",
- "blast",
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+ "url": "https://github.com/Sydney-Informatics-Hub/OmixLitMiner",
+ "rel": "/software/repository/github/Sydney-Informatics-Hub/OmixLitMiner",
+ "avatar": "https://avatars.githubusercontent.com/u/38518764?v=4",
+ "description": "A bioinformatics tool for prioritising biological leads from omics data using literature mining.",
+ "topics": []
},
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- "description": "Implementation of the Genesis 2 tool ",
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+ "url": "https://github.com/Sydney-Informatics-Hub/geodata-harvester",
+ "rel": "/software/repository/github/Sydney-Informatics-Hub/geodata-harvester",
+ "avatar": "https://avatars.githubusercontent.com/u/38518764?v=4",
+ "description": "Jumpstart your geospatial analysis with a ready-made set of spatial-temporal aligned raster maps and data frames",
"topics": []
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- "econometrics",
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+ "description": "HATPI image and light curve processing pipeline.",
+ "topics": []
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- "description": "Bacterial analysis Toolbox for profiling the Resistome of ESKAPE pathogens using WGS",
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+ "url": "https://github.com/PTsolvers/JustRelax.jl",
+ "rel": "/software/repository/github/PTsolvers/JustRelax.jl",
+ "avatar": "https://avatars.githubusercontent.com/u/79769824?v=4",
+ "description": "Pseudo-transient accelerated iterative solvers",
"topics": [
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- "eskape",
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+ "hpc",
+ "julialang",
+ "parallel"
]
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- "coronavirus"
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+ "avatar": "https://avatars.githubusercontent.com/u/10123688?v=4",
+ "description": "Machine learning for PT profiles of exoplanet atmospheres \ud83e\ude90",
+ "topics": []
},
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- "avatar": "https://avatars.githubusercontent.com/u/12842810?v=4",
- "description": "A ROS interface to FCL collision checking",
+ "uid": "github/timothygebhard/fm4ar",
+ "url": "https://github.com/timothygebhard/fm4ar",
+ "rel": "/software/repository/github/timothygebhard/fm4ar",
+ "avatar": "https://avatars.githubusercontent.com/u/10123688?v=4",
+ "description": "Flow matching for atmospheric retrievals",
"topics": []
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- "avatar": "https://avatars.githubusercontent.com/u/12842810?v=4",
- "description": "Constrained Manipulability is a library used to compute and visualize a robot's capacities in constrained environments. ",
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+ "avatar": "https://avatars.githubusercontent.com/u/473538?v=4",
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- "description": "an OpenAI Gym environment for saturation provers",
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"topics": []
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- "description": "Deep Convolutional Neural Networks and Machine Learning Models for Analyzing Stellar and Exoplanetary Telescope Spectra",
+ "uid": "github/ncsa/NEAT",
+ "url": "https://github.com/ncsa/NEAT",
+ "rel": "/software/repository/github/ncsa/NEAT",
+ "avatar": "https://avatars.githubusercontent.com/u/7528333?v=4",
+ "description": "NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.",
"topics": [
- "astronomy",
- "atmospheric-modelling",
- "convolutional-neural-networks",
- "machine-learning",
- "star",
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+ "bioinformatics",
+ "bioinformatics-tool"
]
},
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- "description": "X-PSI: X-ray Pulse Simulation and Inference",
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- "combustion",
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+ "julia",
+ "symbolic",
+ "symbolic-computation",
+ "algebraic",
+ "cas",
+ "metatheory",
+ "programming-language",
+ "optimization",
+ "compiler-optimization",
+ "compiler-construction"
]
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+ "description": "rOpenSci's blog guidance",
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+ "classification"
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"topics": [
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+ "experimental",
+ "design",
+ "breeding",
+ "agricultural"
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+ "rstats",
+ "variable-selection",
+ "feature-selection-",
+ "correlation",
+ "enumeration",
+ "glm",
+ "graph-algorithms",
+ "machine-learning",
+ "mixed-models",
+ "multicollinearity",
+ "regression",
+ "statistics",
+ "vif"
+ ]
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+ "genomics",
+ "variant-calling",
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+ "haplotypes",
+ "somatic-variants",
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+ "single-cell"
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+ "enhanced-sampling",
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+ "lammps",
+ "gromacs",
+ "hoomd-blue",
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+ "miccom"
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+ "matlab",
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+ "macos",
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+ "chemistry",
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+ "cnn",
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+ "description": "python code implementing Spectral Subtraction Technique to study chromospheric activity in Cool Stars",
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+ "description": "Analytical Web Apps for Python, R, Julia, and Jupyter. No JavaScript Required.",
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+ "dash",
+ "plotly",
+ "data-visualization",
+ "data-science",
+ "gui-framework",
+ "flask",
+ "react",
+ "python",
+ "finance",
+ "bioinformatics",
+ "technical-computing",
+ "charting",
+ "plotly-dash",
+ "web-app",
+ "productivity",
+ "no-javascript",
+ "modeling",
+ "r",
+ "rstats",
+ "jupyter"
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- "description": "Unsupervised Substructure Discovery using Topic Modelling with Automated Annotation.",
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+ "description": "End-to-end deep learning pipeline for gravitational-wave signal detection",
+ "topics": [
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+ "machine-learning",
+ "search-algorithm",
+ "python",
+ "pytorch",
+ "jupyter-notebooks",
+ "binary-black-holes",
+ "bias-mitigation",
+ "signal-processing",
+ "colab-notebooks"
+ ]
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+ "description": "Functions to manipulate and visualize microbial community data",
+ "topics": [
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+ "microbiome-analysis",
+ "r",
+ "tidy",
+ "visualization"
+ ]
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+ "description": "Deezer source separation library including pretrained models.",
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+ "python",
+ "tensorflow",
+ "audio-processing",
+ "pretrained-models",
+ "bass",
+ "drums",
+ "vocals",
+ "deep-learning",
+ "model"
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- "description": "Fast Multipole Methods in Rust",
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+ "description": "A Python package to calculate and visualize some popular drought indices such as the SPI, SPEI and SGI.",
+ "topics": [
+ "drought",
+ "groundwater",
+ "hydrology",
+ "python",
+ "sgi",
+ "spei",
+ "timeseries",
+ "spi",
+ "drought-index",
+ "drought-indices"
+ ]
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- "description": "Querying genomes for evidence of Programmed DNA Elimination",
+ "uid": "github/casasglobal-org/psymple",
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- "description": "Empirical gravitational acceleration estimator from lensing observables",
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- "concentration",
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- "soliton",
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+ "uid": "github/msolpera/pyUPMASK",
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+ "description": "Unsupervised clustering method for stellar clusters.",
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- "description": "\ud83c\udf32 An easy-to-use and scalable toolkit for genomic alteration (mutational) signature analysis and visualization in R",
+ "uid": "github/IAMconsortium/pyam",
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+ "description": "Analysis & visualization of energy & climate scenarios",
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- "copynumber-signatures",
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- "signature-extraction",
- "nmf",
- "nmf-extraction",
- "bayesian-nmf",
- "bioinformatics",
- "r",
- "cancer-research",
+ "integrated-assessment",
+ "scenario",
+ "analysis",
+ "iamc-format",
"visualization",
- "sbs",
- "dbs",
- "indel",
- "cnv",
- "easy-to-use"
+ "macro-energy",
+ "energy-systems",
+ "modeling",
+ "timeseries-format",
+ "integrated-assessment-scenarios",
+ "scenario-data",
+ "pyam"
]
},
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+ "uid": "github/smirarab/pasta",
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+ "simulation",
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+ "description": "Config files for my GitHub profile.",
"topics": [
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- "gadget",
- "cosmology"
+ "config",
+ "github-config"
]
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+ "description": "DIRTY: 3D dust radiative transfer for dusty astrophysical sources",
+ "topics": [
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+ "radiative-transfer-models",
+ "monte-carlo",
+ "interstellar-medium",
+ "dust"
+ ]
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- "description": "FAC - Flexible Atomic Code by Ming Feng Gu",
- "topics": []
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+ "avatar": "https://avatars.githubusercontent.com/u/1554536?v=4",
+ "description": "Astronomical Dust Extinction",
+ "topics": [
+ "dust-extinction",
+ "extinction",
+ "astronomy",
+ "astrophysics",
+ "astropy",
+ "dust",
+ "hacktoberfest"
+ ]
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- "python",
- "opticstudio",
- "zos-api",
- "zemax",
- "optics",
- "optics-simulation"
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]
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- "description": "JupyterLab computational environment.",
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+ "rel": "/software/repository/github/hyriver/hysetter",
+ "avatar": "https://avatars.githubusercontent.com/u/109259800?v=4",
+ "description": "A command-line tool for getting hydroclimate data within CONUS using HyRiver",
"topics": [
- "jupyterlab",
- "jupyter"
+ "climate-data",
+ "daymet",
+ "gridmet",
+ "hydrology",
+ "nldas",
+ "nwis"
]
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{
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- "description": "Public repository for the IMCOM (IMage COMbination) software described in Rowe, Hirata & Rhodes (2011)",
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+ "url": "https://github.com/nla-group/fABBA",
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+ "description": "A Python library for the fast symbolic approximation of time series",
+ "topics": [
+ "machine-learning",
+ "dimensionality-reduction",
+ "time-series",
+ "time-series-analysis",
+ "time-series-forecasting",
+ "time-series-classification",
+ "time-series-clustering",
+ "symbolic-aggregate-approximation",
+ "symbolic-representation"
+ ]
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{
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- "description": "https://opimwue.github.io/ddop/.",
+ "uid": "github/FelixKrueger/TrimGalore",
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+ "avatar": "https://avatars.githubusercontent.com/u/5870509?v=4",
+ "description": "A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data",
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{
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- "topics": [
- "contamination-detection",
- "metagenomics",
- "quality-control"
- ]
+ "uid": "github/Computational-NeuroGenetics/deMeta-beta",
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+ "topics": []
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- "avatar": "https://avatars.githubusercontent.com/u/47028450?v=4",
- "description": "Cambridge Cognitive and Psychiatric Test Kit (CamCOPS)",
+ "uid": "github/CisnerosResearch/LICHEM",
+ "url": "https://github.com/CisnerosResearch/LICHEM",
+ "rel": "/software/repository/github/CisnerosResearch/LICHEM",
+ "avatar": "https://avatars.githubusercontent.com/u/43679387?v=4",
+ "description": "This package is an open-source (GPLv3) interface between QM and MM software so that QM/MM calculations can be performed with polarizable and frozen electron density force fields. Functionality is also present for standard point-charge based force fields, pure MM, and pure QM calculations.",
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- "topics": [
- "cgenie",
- "earth-system-model",
- "python",
- "earth-sciences",
- "oceanography",
- "visualisation"
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+ "uid": "github/shinichiroando/sashimi-w",
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+ "topics": []
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+ "url": "https://github.com/shinichiroando/sashimi-c",
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+ "avatar": "https://avatars.githubusercontent.com/u/3914962?v=4",
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- "description": "Discover regulatory relationships for multi-omics data using regression models",
- "topics": []
+ "uid": "github/n8thangreen/BCEA",
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+ "avatar": "https://avatars.githubusercontent.com/u/3061918?v=4",
+ "description": "Bayesian Cost Effectiveness Analysis. Given the results of a Bayesian model (possibly based on MCMC) in the form of simulations from the posterior distributions of suitable variables of costs and clinical benefits for two or more interventions, produces a health economic evaluation. Compares one of the interventions (the \"reference\") to the others (\"comparators\"). Produces many summary and plots to analyse the results",
+ "topics": [
+ "cost-effectiveness",
+ "bayesian"
+ ]
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{
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- "description": "Create mock IFU datacubes for stellar population and kinematic modelling.",
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+ "url": "https://github.com/BrownDwarf/gollum",
+ "rel": "/software/repository/github/BrownDwarf/gollum",
+ "avatar": "https://avatars.githubusercontent.com/u/8246702?v=4",
+ "description": "A microservice for programmatic access to precomputed synthetic spectral model grids in astronomy",
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"astronomy",
- "astrophysics",
- "datacube",
- "galaxy",
- "python",
"spectroscopy",
- "stellar-kinematics",
- "stellar-populations"
+ "science",
+ "astrophysics",
+ "stars",
+ "physics",
+ "python"
]
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- "avatar": "https://avatars0.githubusercontent.com/u/897180?v=4",
- "description": "Image processing in Python",
+ "uid": "github/erikbern/ann-benchmarks",
+ "url": "https://github.com/erikbern/ann-benchmarks",
+ "rel": "/software/repository/github/erikbern/ann-benchmarks",
+ "avatar": "https://avatars2.githubusercontent.com/u/1027979?v=4",
+ "description": "Benchmarks of approximate nearest neighbor libraries in Python",
"topics": [
- "image-processing",
- "python",
- "computer-vision"
+ "nearest-neighbors",
+ "benchmark",
+ "docker"
]
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- "description": "Shiny application for interactive Evolution teaching activity on heritability and making use of the Breeder's equation",
+ "uid": "github/AnthonyOfSeattle/pyAscoreValidation",
+ "url": "https://github.com/AnthonyOfSeattle/pyAscoreValidation",
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+ "description": "Validation experiments for the pyAscore python package.",
"topics": []
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- "description": "Radial velocities for low-resolution NIR spectra using telluric features to provide absolute wavelength calibration",
+ "uid": "github/Open-Minds-Lab/MRdataset",
+ "url": "https://github.com/Open-Minds-Lab/MRdataset",
+ "rel": "/software/repository/github/Open-Minds-Lab/MRdataset",
+ "avatar": "https://avatars.githubusercontent.com/u/71519641?v=4",
+ "description": "MRdataset : unified interface to various neuroimaging dataset formats",
+ "topics": [
+ "neuroimaging",
+ "mri",
+ "neuroscience",
+ "quality-control",
+ "niqc"
+ ]
+ },
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+ "url": "https://github.com/s-abbas/robnptests",
+ "rel": "/software/repository/github/s-abbas/robnptests",
+ "avatar": "https://avatars.githubusercontent.com/u/10209088?v=4",
+ "description": "Robust two-sample tests for the location problem",
"topics": []
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- "description": "Sparsity based weak lensing mass-mapping tool",
+ "uid": "github/pacificbiosciences/bam2fastx",
+ "url": "https://github.com/PacificBiosciences/bam2fastx",
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+ "avatar": "https://avatars.githubusercontent.com/u/999745?v=4",
+ "description": "Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.",
"topics": []
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- "url": "https://github.com/CosmoStat/mccd",
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- "description": "Multi-CCD data-driven PSF modelling",
+ "uid": "github/Hegghammer/daiR",
+ "url": "https://github.com/Hegghammer/daiR",
+ "rel": "/software/repository/github/Hegghammer/daiR",
+ "avatar": "https://avatars.githubusercontent.com/u/64712218?v=4",
+ "description": "R package for Google Document AI ",
"topics": [
- "python"
+ "ocr",
+ "r",
+ "google-cloud"
]
},
{
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- "avatar": "https://avatars.githubusercontent.com/u/16947949?v=4",
- "description": "Shape COnstraint REstoration",
+ "uid": "github/biofold/PhD-SNPg",
+ "url": "https://github.com/biofold/PhD-SNPg",
+ "rel": "/software/repository/github/biofold/PhD-SNPg",
+ "avatar": "https://avatars.githubusercontent.com/u/15142086?v=4",
+ "description": null,
"topics": []
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- "avatar": "https://avatars.githubusercontent.com/u/16947949?v=4",
- "description": "Shape Measurement Pipeline",
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+ "url": "https://github.com/biofold/ddgun",
+ "rel": "/software/repository/github/biofold/ddgun",
+ "avatar": "https://avatars.githubusercontent.com/u/15142086?v=4",
+ "description": "predict stability change upon mutation",
"topics": []
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{
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- "description": "Permutation testing for GWAS using FPGAs",
+ "uid": "github/rramadeu/AGHmatrix",
+ "url": "https://github.com/rramadeu/AGHmatrix",
+ "rel": "/software/repository/github/rramadeu/AGHmatrix",
+ "avatar": "https://avatars.githubusercontent.com/u/10066681?v=4",
+ "description": "An R package to compute relationship matrices for diploid and autopolyploid species",
"topics": []
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{
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- "url": "https://github.com/Astroua/SCIMES",
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- "avatar": "https://avatars.githubusercontent.com/u/5502523?v=4",
- "description": "Spectral Clustering for Interstellar Molecular Emission Segmentation",
+ "uid": "github/wangsiwei2010/FPMVS-CAG",
+ "url": "https://github.com/wangsiwei2010/FPMVS-CAG",
+ "rel": "/software/repository/github/wangsiwei2010/FPMVS-CAG",
+ "avatar": "https://avatars.githubusercontent.com/u/16240342?v=4",
+ "description": "code of \"Fast Parameter-free Multi-view Subspace Clustering with Consensus Anchor Guidance \" published in IEEE TIP2022",
"topics": []
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{
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- "avatar": "https://avatars.githubusercontent.com/u/5502523?v=4",
- "description": "Statistics of Turbulence Python Package",
- "topics": []
+ "uid": "github/abmantz/rgw",
+ "url": "https://github.com/abmantz/rgw",
+ "rel": "/software/repository/github/abmantz/rgw",
+ "avatar": "https://avatars.githubusercontent.com/u/10962486?v=4",
+ "description": "A lightweight R-language implementation of the affine-invariant sampling method of Goodman & Weare (2010)",
+ "topics": [
+ "statistics",
+ "markov-chain-monte-carlo"
+ ]
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{
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- "avatar": "https://avatars.githubusercontent.com/u/25008422?v=4",
- "description": "Probabilistic Numerical Differential Equation solvers via Bayesian filtering and smoothing",
+ "uid": "github/abmantz/lrgs",
+ "url": "https://github.com/abmantz/lrgs",
+ "rel": "/software/repository/github/abmantz/lrgs",
+ "avatar": "https://avatars.githubusercontent.com/u/10962486?v=4",
+ "description": "Code to perform multivariate linear regression using Gibbs sampling",
"topics": [
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- "differential-equations",
- "probabilistic-models",
- "ode",
- "ode-solver",
- "probabilistic-numerics",
- "hacktoberfest"
+ "linear-regression",
+ "multivariate-regression",
+ "gibbs-sampler"
]
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- "description": "Differentiable transit light curves",
+ "uid": "github/abmantz/lmc",
+ "url": "https://github.com/abmantz/lmc",
+ "rel": "/software/repository/github/abmantz/lmc",
+ "avatar": "https://avatars.githubusercontent.com/u/10962486?v=4",
+ "description": "Logarithmantic Monte Carlo",
+ "topics": [
+ "monte-carlo",
+ "python",
+ "sampler"
+ ]
+ },
+ {
+ "uid": "github/SJLeo/FFSD",
+ "url": "https://github.com/SJLeo/FFSD",
+ "rel": "/software/repository/github/SJLeo/FFSD",
+ "avatar": "https://avatars.githubusercontent.com/u/25793304?v=4",
+ "description": "Pytorch implementation of our paper accepted by IEEE TNNLS, 2022 -- Distilling a Powerful Student Model via Online Knowledge Distillation",
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{
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- "description": "An R package for simulating line lists",
+ "uid": "github/ThomasMBury/ewstools",
+ "url": "https://github.com/ThomasMBury/ewstools",
+ "rel": "/software/repository/github/ThomasMBury/ewstools",
+ "avatar": "https://avatars.githubusercontent.com/u/36854425?v=4",
+ "description": "Python package for early warning signals (EWS) of bifurcations in time series data.",
"topics": [
- "epidemiology",
- "epiverse",
- "linelist",
- "outbreaks",
- "r",
- "r-package"
+ "time-series",
+ "forecasting",
+ "early-warning-signals",
+ "early-warning-indicators",
+ "bifurcation",
+ "critical-transitions",
+ "resilience-indicators",
+ "tipping-point",
+ "autocorrelation",
+ "power-spectrum",
+ "bootstrapping",
+ "complex-systems",
+ "python",
+ "ipynb",
+ "visualization"
]
},
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- "description": "Set of C++ classes to operate on radio astronomical data.",
- "topics": []
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+ "music",
+ "noise"
+ ]
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- "description": "Psifr: Analysis and visualization of free recall data",
+ "uid": "github/jonahpowley/dvsg",
+ "url": "https://github.com/jonahpowley/dvsg",
+ "rel": "/software/repository/github/jonahpowley/dvsg",
+ "avatar": "https://avatars.githubusercontent.com/u/116847755?v=4",
+ "description": "Python code to calculate the kinematic disturbance parameter \u0394V\u22c6\u2212g",
"topics": []
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- "url": "https://github.com/daiqile96/OTTERS_paper",
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+ "uid": "github/benhid/Sequoya",
+ "url": "https://github.com/benhid/Sequoya",
+ "rel": "/software/repository/github/benhid/Sequoya",
+ "avatar": "https://avatars.githubusercontent.com/u/6999898?v=4",
+ "description": "Solving Multiple Sequence Alignment (MSA) problems with multi-objective metaheuristics",
+ "topics": [
+ "metaheuristics",
+ "optimization",
+ "sequence-alignments",
+ "msa",
+ "multiple-sequence-alignment",
+ "python"
+ ]
+ },
+ {
+ "uid": "github/iopenshell/ezSpectrum",
+ "url": "https://github.com/iopenshell/ezSpectrum",
+ "rel": "/software/repository/github/iopenshell/ezSpectrum",
+ "avatar": "https://avatars.githubusercontent.com/u/10172280?v=4",
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"topics": []
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+ "url": "https://github.com/scverse/scanpy",
+ "rel": "/software/repository/github/theislab/scanpy",
+ "avatar": "https://avatars.githubusercontent.com/u/95305807?v=4",
+ "description": "Single-cell analysis in Python. Scales to >1M cells.",
"topics": [
- "image-processing",
- "fits",
- "world-coordinates",
- "fits-image",
- "fits-files",
- "fits-bintables",
- "fits-image-sets",
- "wcs-solver"
+ "machine-learning",
+ "data-science",
+ "visualize-data",
+ "transcriptomics",
+ "bioinformatics",
+ "scanpy",
+ "anndata",
+ "python",
+ "scverse"
]
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+ "uid": "github/theislab/cellrank",
+ "url": "https://github.com/theislab/cellrank",
+ "rel": "/software/repository/github/theislab/cellrank",
+ "avatar": "https://avatars.githubusercontent.com/u/22319415?v=4",
+ "description": "CellRank: dynamics from multi-view single-cell data",
"topics": [
- "fits",
- "fits-files",
- "fits-image",
- "fits-visualization",
- "world-coordinates",
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- "point-source-extraction",
- "bin-tables",
- "fits-image-sets",
- "astronomy",
- "fitsharp",
- "fitsio",
- "fits-bintables"
+ "machine-learning",
+ "single-cell-rna-seq",
+ "bioinformatics",
+ "rna-velocity",
+ "markov-chains",
+ "genetics",
+ "data-science",
+ "fuzzy-clustering-analyses",
+ "manifold-learning",
+ "single-cell-genomics",
+ "trajectory-generation",
+ "cell-fate-transitions",
+ "cell-fate-determination"
]
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- "avatar": "https://avatars.githubusercontent.com/u/40668405?v=4",
- "description": "Fast Automatic World Coordinate Solution Solver. See the github Wiki link below for more info.",
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+ "url": "https://github.com/scverse/anndata",
+ "rel": "/software/repository/github/theislab/anndata",
+ "avatar": "https://avatars.githubusercontent.com/u/95305807?v=4",
+ "description": "Annotated data.",
"topics": [
- "world-coordinate-solution",
- "fits",
- "fits-image",
- "wcs"
+ "scanpy",
+ "data-science",
+ "transcriptomics",
+ "bioinformatics",
+ "machine-learning",
+ "scverse"
]
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- "rel": "/software/repository/github/FunctionalUrology/MLcps",
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- "description": null,
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+ "url": "https://github.com/theislab/scvelo",
+ "rel": "/software/repository/github/theislab/scvelo",
+ "avatar": "https://avatars.githubusercontent.com/u/22319415?v=4",
+ "description": "RNA Velocity generalized through dynamical modeling",
"topics": []
},
{
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- "url": "https://github.com/eweitz/ideogram",
- "rel": "/software/repository/github/eweitz/ideogram",
- "avatar": "https://avatars1.githubusercontent.com/u/1334561?v=4",
- "description": "Chromosome visualization for the web",
+ "uid": "github/theislab/scCODA",
+ "url": "https://github.com/theislab/scCODA",
+ "rel": "/software/repository/github/theislab/scCODA",
+ "avatar": "https://avatars.githubusercontent.com/u/22319415?v=4",
+ "description": "A Bayesian model for compositional single-cell data analysis",
"topics": [
- "visualization",
- "genomics",
- "cytogenetics",
- "karyotype",
- "cancer-genomics",
- "comparative-genomics",
- "personal-genomics"
+ "tensorflow",
+ "compositional-changes",
+ "statistical-analysis",
+ "single-cell-rna-seq"
]
},
- {
- "uid": "github/dengzhuo-AI/Real-Fundus",
- "url": "https://github.com/dengzhuo-AI/Real-Fundus",
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- "avatar": "https://avatars.githubusercontent.com/u/63216977?v=4",
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- "topics": []
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- "avatar": "https://avatars.githubusercontent.com/u/37936611?v=4",
- "description": "Gamma-ray propagation package for Wolfram Mathematica",
- "topics": []
- },
- {
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- "avatar": "https://avatars.githubusercontent.com/u/11157236?v=4",
- "description": "R package for the inference of cell fate bias from single-cell RNA-seq data.",
- "topics": []
+ {
+ "uid": "github/theislab/anndata2ri",
+ "url": "https://github.com/theislab/anndata2ri",
+ "rel": "/software/repository/github/theislab/anndata2ri",
+ "avatar": "https://avatars.githubusercontent.com/u/22319415?v=4",
+ "description": "Convert between AnnData and SingleCellExperiment",
+ "topics": [
+ "scanpy",
+ "single-cell",
+ "bioconductor",
+ "jupyter",
+ "rpy2"
+ ]
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{
- "uid": "github/RenneLab/hybkit",
- "url": "https://github.com/RenneLab/hybkit",
- "rel": "/software/repository/github/RenneLab/hybkit",
- "avatar": "https://avatars.githubusercontent.com/u/34487862?v=4",
- "description": "Toolkit for analysis of \".hyb\" format nucleotide sequence data from chimeric RNA experiments.",
+ "uid": "github/MannLabs/alphapept",
+ "url": "https://github.com/MannLabs/alphapept",
+ "rel": "/software/repository/github/MannLabs/alphapept",
+ "avatar": "https://avatars.githubusercontent.com/u/46714192?v=4",
+ "description": "A modular, python-based framework for mass spectrometry. Powered by nbdev.",
"topics": [
- "genomics",
+ "mass-spectrometry",
"bioinformatics",
- "bioinformatics-tool",
- "bioinformatics-pipeline",
- "ribonomics",
- "hyb",
- "clash",
- "qclash"
+ "proteomics"
]
},
{
- "uid": "github/UoMMIB/TFBMiner",
- "url": "https://github.com/UoMMIB/TFBMiner",
- "rel": "/software/repository/github/UoMMIB/TFBMiner",
- "avatar": "https://avatars.githubusercontent.com/u/65022631?v=4",
- "description": "TFBMiner is a data acquisition and analysis pipeline for the rapid identification of putative transcription factor-based biosensors.",
+ "uid": "github/kieranatkins/silique-detector",
+ "url": "https://github.com/kieranatkins/silique-detector",
+ "rel": "/software/repository/github/kieranatkins/silique-detector",
+ "avatar": "https://avatars.githubusercontent.com/u/22368431?v=4",
+ "description": "Model weights, inference code and phenotyping code associated with the paper \"Deep Learning Phenotyping of Arabidopsis Fruits with QTL Analysis Verification\" by Atkins et al.",
"topics": []
},
{
- "uid": "github/xmuyulab/DreamDIA-XMBD",
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- "avatar": "https://avatars.githubusercontent.com/u/36484498?v=4",
- "description": "Software for data-independent acquisition (DIA) proteomic data processing with deep representation features.",
+ "uid": "github/kieranatkins/gimp-image-annotator",
+ "url": "https://github.com/kieranatkins/gimp-image-annotator",
+ "rel": "/software/repository/github/kieranatkins/gimp-image-annotator",
+ "avatar": "https://avatars.githubusercontent.com/u/22368431?v=4",
+ "description": "A GIMP plug-in to allow for direct generation of semantic segementation masks for use in machine learning projects, using the power of the GIMP selection tools.",
"topics": []
},
{
- "uid": "github/H-E-L-P/XID_plus",
- "url": "https://github.com/H-E-L-P/XID_plus",
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- "avatar": "https://avatars.githubusercontent.com/u/7880370?v=4",
- "description": "Next generation XID development",
+ "uid": "github/tkarwal/procoli",
+ "url": "https://github.com/tkarwal/procoli",
+ "rel": "/software/repository/github/tkarwal/procoli",
+ "avatar": "https://avatars.githubusercontent.com/u/33636657?v=4",
+ "description": "Profiles of cosmological likelihoods: Code for extracting the 1D profile likelihood of a parameter using MontePython ",
"topics": []
},
{
- "uid": "github/asgr/NFWdist",
- "url": "https://github.com/asgr/NFWdist",
- "rel": "/software/repository/github/asgr/NFWdist",
- "avatar": "https://avatars.githubusercontent.com/u/5617132?v=4",
- "description": "Density, distribution function, quantile function and random generation for the 3D NFW profile",
+ "uid": "github/umbralcalc/nfield",
+ "url": "https://github.com/umbralcalc/nfield",
+ "rel": "/software/repository/github/umbralcalc/nfield",
+ "avatar": "https://avatars.githubusercontent.com/u/12143658?v=4",
+ "description": "Code for generally computing IR correlators during inflation with n-field dimensions - makes use of the formalism of Stochastic Inflation and hence 'mlsolver'",
"topics": []
},
{
- "uid": "github/asgr/Rwcs",
- "url": "https://github.com/asgr/Rwcs",
- "rel": "/software/repository/github/asgr/Rwcs",
- "avatar": "https://avatars.githubusercontent.com/u/5617132?v=4",
- "description": "Interface to C wcslib",
+ "uid": "github/umbralcalc/foxi",
+ "url": "https://github.com/umbralcalc/foxi",
+ "rel": "/software/repository/github/umbralcalc/foxi",
+ "avatar": "https://avatars.githubusercontent.com/u/12143658?v=4",
+ "description": "Futuristic Observations and their eXpected Information: package for automated computation of a suite of information-theoretic and Bayesian expected utilities for deciding between scientific experimental designs ",
"topics": []
},
{
- "uid": "github/asgr/ProFound",
- "url": "https://github.com/asgr/ProFound",
- "rel": "/software/repository/github/asgr/ProFound",
- "avatar": "https://avatars.githubusercontent.com/u/5617132?v=4",
- "description": "ProFound source finding and extraction",
+ "uid": "github/umbralcalc/helmpy",
+ "url": "https://github.com/umbralcalc/helmpy",
+ "rel": "/software/repository/github/umbralcalc/helmpy",
+ "avatar": "https://avatars.githubusercontent.com/u/12143658?v=4",
+ "description": "An all-in-one python class for optimised stochastic simulation and forecasting the effect of mass drug administration on helminth (parasitic worm) disease transmission",
"topics": []
},
{
- "uid": "github/asgr/hyper.fit",
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- "avatar": "https://avatars.githubusercontent.com/u/5617132?v=4",
- "description": "The hyper.fit hyperplane fitting package.",
- "topics": []
+ "uid": "github/euclidlib/euclidlib",
+ "url": "https://github.com/euclidlib/euclidlib",
+ "rel": "/software/repository/github/euclidlib/euclidlib",
+ "avatar": "https://avatars.githubusercontent.com/u/160159153?v=4",
+ "description": "Unofficial python library for reading data products from the Euclid mission",
+ "topics": [
+ "cosmology",
+ "euclid",
+ "library",
+ "python"
+ ]
},
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- "url": "https://github.com/asgr/ProSpect",
- "rel": "/software/repository/github/asgr/ProSpect",
- "avatar": "https://avatars.githubusercontent.com/u/5617132?v=4",
- "description": "Spectral Generation Package",
- "topics": []
+ "uid": "github/engyasin/Offline_MOT",
+ "url": "https://github.com/engyasin/Offline_MOT",
+ "rel": "/software/repository/github/engyasin/Offline_MOT",
+ "avatar": "https://avatars.githubusercontent.com/u/15736151?v=4",
+ "description": "Multiple traffic entities detection and tracking from bird-view drone stationary videos https://engyasin.github.io/Offline_MOT/",
+ "topics": [
+ "multiple-object-tracking",
+ "drone",
+ "object-detection",
+ "python"
+ ]
},
{
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- "url": "https://github.com/asgr/ProFuse",
- "rel": "/software/repository/github/asgr/ProFuse",
- "avatar": "https://avatars.githubusercontent.com/u/5617132?v=4",
- "description": "ProFound + ProFit + ProSpect = ProFuse",
- "topics": []
+ "uid": "github/rorybarnes/EqTide",
+ "url": "https://github.com/RoryBarnes/EqTide",
+ "rel": "/software/repository/github/rorybarnes/EqTide",
+ "avatar": "https://avatars.githubusercontent.com/u/4413842?v=4",
+ "description": "Source code for Equilibrium Tide calculations",
+ "topics": [
+ "tides",
+ "orbits",
+ "planets",
+ "moons",
+ "exoplanets"
+ ]
},
{
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- "url": "https://github.com/asgr/ProPane",
- "rel": "/software/repository/github/asgr/ProPane",
- "avatar": "https://avatars.githubusercontent.com/u/5617132?v=4",
- "description": "Package of stacking related functions, replacing older Rwcs and ProFound related functions.",
+ "uid": "github/bids-apps/giga_connectome",
+ "url": "https://github.com/bids-apps/giga_connectome",
+ "rel": "/software/repository/github/bids-apps/giga_connectome",
+ "avatar": "https://avatars.githubusercontent.com/u/20709205?v=4",
+ "description": "generate connectome from fMRIPrep outputs",
"topics": []
},
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- "url": "https://github.com/asgr/celestial",
- "rel": "/software/repository/github/asgr/celestial",
- "avatar": "https://avatars.githubusercontent.com/u/5617132?v=4",
- "description": "celestial R package",
+ "uid": "github/hpc4cmb/toast",
+ "url": "https://github.com/hpc4cmb/toast",
+ "rel": "/software/repository/github/hpc4cmb/toast",
+ "avatar": "https://avatars.githubusercontent.com/u/19177696?v=4",
+ "description": "Time Ordered Astrophysics Scalable Tools",
"topics": []
},
{
- "uid": "github/asgr/Rfits",
- "url": "https://github.com/asgr/Rfits",
- "rel": "/software/repository/github/asgr/Rfits",
- "avatar": "https://avatars.githubusercontent.com/u/5617132?v=4",
- "description": "Rfits stuff",
+ "uid": "github/raredd/kmdata",
+ "url": "https://github.com/raredd/kmdata",
+ "rel": "/software/repository/github/raredd/kmdata",
+ "avatar": "https://avatars.githubusercontent.com/u/6332718?v=4",
+ "description": "kmdata: A Database of Reconstructed Individual Patient Level Data from 153 Oncology Clinical trials",
"topics": []
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- "url": "https://github.com/lengoctram/DustPOL-py",
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- "avatar": "https://avatars.githubusercontent.com/u/91097424?v=4",
- "description": "numerical modelling (source code)",
- "topics": []
+ "uid": "github/matthias-mayr/Cartesian-Impedance-Controller",
+ "url": "https://github.com/matthias-mayr/Cartesian-Impedance-Controller",
+ "rel": "/software/repository/github/matthias-mayr/Cartesian-Impedance-Controller",
+ "avatar": "https://avatars.githubusercontent.com/u/64466074?v=4",
+ "description": "A C++ implementation of Cartesian impedance control for torque-controlled manipulators with ROS bindings.",
+ "topics": [
+ "franka-emika",
+ "franka-panda",
+ "gazebo",
+ "iiwa",
+ "kuka-iiwa",
+ "kuka-lbr-iiwa",
+ "manipulators",
+ "robotics",
+ "ros",
+ "compliant-control"
+ ]
},
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- "url": "https://github.com/lengoctram/DustPOL_py",
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- "avatar": "https://avatars.githubusercontent.com/u/91097424?v=4",
- "description": "numerical modelling (source code)",
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+ "uid": "github/eWaterCycle/jupyterlab_thredds",
+ "url": "https://github.com/eWaterCycle/jupyterlab_thredds",
+ "rel": "/software/repository/github/eWaterCycle/jupyterlab_thredds",
+ "avatar": "https://avatars0.githubusercontent.com/u/12843269?v=4",
+ "description": "JupyterLab dataset browser for THREDDS catalog",
+ "topics": [
+ "thredds",
+ "jupyterlab-extension"
+ ]
},
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- "avatar": "https://avatars.githubusercontent.com/u/40721514?v=4",
- "description": "A python package for a distance-based classifier which can use several different distance metrics.",
+ "uid": "github/eWaterCycle/setup-singularity",
+ "url": "https://github.com/eWaterCycle/setup-singularity",
+ "rel": "/software/repository/github/eWaterCycle/setup-singularity",
+ "avatar": "https://avatars0.githubusercontent.com/u/12843269?v=4",
+ "description": "GitHub action to setup singularity",
"topics": []
},
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- "url": "https://github.com/latrop/DECA",
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- "avatar": "https://avatars.githubusercontent.com/u/382630?v=4",
- "description": "A tool for decomposition of images of galaxies",
- "topics": []
+ "uid": "github/eWaterCycle/grpc4bmi",
+ "url": "https://github.com/eWaterCycle/grpc4bmi",
+ "rel": "/software/repository/github/eWaterCycle/grpc4bmi",
+ "avatar": "https://avatars0.githubusercontent.com/u/12843269?v=4",
+ "description": "gRPC wrapper for model with a Basic modeling interface",
+ "topics": [
+ "grpc",
+ "bmi",
+ "python"
+ ]
},
{
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- "avatar": "https://avatars.githubusercontent.com/u/9202071?v=4",
- "description": "Quasar classification with XD",
+ "uid": "github/eWaterCycle/setup-grpc",
+ "url": "https://github.com/eWaterCycle/setup-grpc",
+ "rel": "/software/repository/github/eWaterCycle/setup-grpc",
+ "avatar": "https://avatars0.githubusercontent.com/u/12843269?v=4",
+ "description": "GitHub Action to setup gRPC C++ environment",
"topics": []
},
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- "avatar": "https://avatars3.githubusercontent.com/u/34157084?v=4",
- "description": "The third major version of the MUltiScale Coupling Library and Environment",
+ "uid": "github/eWaterCycle/experiment-launcher",
+ "url": "https://github.com/eWaterCycle/experiment-launcher",
+ "rel": "/software/repository/github/eWaterCycle/experiment-launcher",
+ "avatar": "https://avatars0.githubusercontent.com/u/12843269?v=4",
+ "description": "eWaterCycle Experiment Launcher",
"topics": []
},
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- "avatar": "https://avatars.githubusercontent.com/u/5395634?v=4",
- "description": "Stand-alone python code to generate extinction law between 0.8 -- 2.2 microns, from Hosek+18",
+ "uid": "github/eWaterCycle/ewatercycle",
+ "url": "https://github.com/eWaterCycle/ewatercycle",
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+ "mri",
+ "mri-reconstruction",
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- "gammatone-filterbanks"
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- "dimensionality-reduction",
- "clustering",
- "clustering-methods",
- "spectra",
- "som"
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+ "galaxy-survey",
+ "big-data"
]
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+ "description": "Set up relative free energy calculations using a common scaffold",
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- "description": "Photometric redshift estimator utilising Generalized Linear Models.",
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+ "description": "R6 object-oriented interface for mathematical sets.",
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- "description": "Compact Package Representations",
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+ "avatar": "https://avatars.githubusercontent.com/u/19526241?v=4",
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- "molecular-dynamics",
- "molecular-mechanics",
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+ "astronomical-algorithms",
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]
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+ "description": "Software for the prediction of DEER and PRE data from conformational ensembles.",
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- "genomics",
- "hi-c",
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+ "deer",
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]
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+ "avatar": "https://avatars.githubusercontent.com/u/8723534?v=4",
+ "description": "An easy-to-use library to extract indices from texts.",
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- "cpp11",
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+ "natural-language-processing",
+ "readability-metrics",
+ "text-processing",
+ "ttr",
+ "spacy",
+ "text-mining",
+ "spacy-extensions",
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+ "lexical-diversity",
+ "type-token-ratio"
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- "description": "Differentiable Cosmological Forward Model",
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+ "avatar": "https://avatars.githubusercontent.com/u/38958822?v=4",
+ "description": "A Python package for analysing the cGENIE model output",
"topics": [
- "cosmology",
- "forward-model",
- "simulation",
- "differentiable",
- "jax",
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+ "cgenie",
+ "earth-system-model",
+ "python",
+ "earth-sciences",
+ "oceanography",
+ "visualisation"
]
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"python",
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+ "microscopy",
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+ "brain",
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+ "cpp17"
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+ "mcmc"
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+ "description": "Prediction of Exoplanet Precisions using Information in Transit Analysis",
+ "topics": [
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+ "exoplanets",
+ "transits"
+ ]
+ },
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+ "url": "https://github.com/GeoscienceAustralia/eo-tides",
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+ "avatar": "https://avatars.githubusercontent.com/u/4704285?v=4",
+ "description": "Tide modelling tools for large-scale satellite earth observation analysis",
"topics": [
- "single-cell",
- "rust",
- "transcriptomics",
- "rna-seq",
- "single-cell-rna-seq",
- "quantification",
- "10x"
+ "earth-observation",
+ "ocean-modelling",
+ "oceanography",
+ "remote-sensing",
+ "satellite-data",
+ "tides",
+ "coastal",
+ "coastal-modelling",
+ "tidesandcurrents",
+ "tide-modelling"
]
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- "debruijn",
- "index",
- "hash",
- "contigs",
- "genome",
- "dbg"
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+ "uid": "github/ysekig/GPMsDB-dbtk",
+ "url": "https://github.com/ysekig/GPMsDB-dbtk",
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+ "avatar": "https://avatars.githubusercontent.com/u/120002055?v=4",
+ "description": "toolkits for GPMsDB-tk to modify its database with user-provided bacterial and archaeal genome/metagenome-assembled genome (MAG) sequences",
+ "topics": []
},
{
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- "avatar": "https://avatars.githubusercontent.com/u/8410750?v=4",
- "description": "A rust framework to make using alevin-fry even simpler",
+ "uid": "github/ysekig/GPMsDB-tk",
+ "url": "https://github.com/ysekig/GPMsDB-tk",
+ "rel": "/software/repository/github/ysekig/GPMsDB-tk",
+ "avatar": "https://avatars.githubusercontent.com/u/120002055?v=4",
+ "description": "Genomically predicted protein mass database (GPMsDB) toolkits for assigning taxonomic identification of bacterial and archaeal cells with user-provided MALDI-TOF mass spectrometry profiles",
"topics": []
},
{
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- "description": "Monotone Parameterization Toolkit (MParT): A core library for constructing and using transport maps.",
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+ "url": "https://github.com/MADHATdm/MADHAT",
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+ "avatar": "https://avatars.githubusercontent.com/u/55260798?v=4",
+ "description": "Model-Agnostic Dark Halo Analysis Tool",
"topics": []
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- "rel": "/software/repository/github/FluidityProject/fluidity",
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- "description": "Fluidity",
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+ "url": "https://github.com/zhang-zhixiang/stellarSpecModel",
+ "rel": "/software/repository/github/zhang-zhixiang/stellarSpecModel",
+ "avatar": "https://avatars.githubusercontent.com/u/12471308?v=4",
+ "description": "This is a simple package to interpolate the stellar spectral grid. Users provide a group of stellar parameters (Teff, FeH, logg), the package will return the corresponding stellar spectrum.",
"topics": []
},
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- "description": "Digital Signal Processing for Big EEGs",
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- "eeg",
- "seizure",
- "signal-processing"
- ]
+ "uid": "github/zhang-zhixiang/spectool",
+ "url": "https://github.com/zhang-zhixiang/spectool",
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+ "avatar": "https://avatars.githubusercontent.com/u/12471308?v=4",
+ "description": "spectool is a collection of common reduction functions for spectroscopic data, providing tools for rebinning, smoothing, normalization, radial velocity measurement, and more.",
+ "topics": []
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- "url": "https://github.com/Kaixhin/dockerfiles",
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- "description": "Compilation of Dockerfiles with automated builds enabled on the Docker Registry",
+ "uid": "github/spectralcode/OCTproZ",
+ "url": "https://github.com/spectralcode/OCTproZ",
+ "rel": "/software/repository/github/spectralcode/OCTproZ",
+ "avatar": "https://avatars2.githubusercontent.com/u/51879191?v=4",
+ "description": "OCTproZ is an open source software for optical coherence tomography processing and visualization.",
"topics": [
- "docker",
- "dockerfiles",
- "machine-learning",
+ "optical-coherence-tomography",
+ "oct",
+ "optics",
+ "medical-image-processing",
+ "gpu-processing",
+ "dsp",
+ "mhz-oct",
+ "qt",
"cuda",
- "vnc",
- "deep-learning"
+ "visualization"
]
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- "description": "Deep Planning Network: Control from pixels by latent planning with learned dynamics",
- "topics": [
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+ "uid": "github/takfung/ResDisMapper",
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+ "avatar": "https://avatars2.githubusercontent.com/u/40194137?v=4",
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+ "topics": []
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- "description": "Basic versions of agents from Spinning Up in Deep RL written in PyTorch",
- "topics": [
- "deep-learning",
- "deep-reinforcement-learning"
- ]
+ "uid": "github/HengyueZ/astrofix",
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+ "rel": "/software/repository/github/HengyueZ/astrofix",
+ "avatar": "https://avatars.githubusercontent.com/u/67264128?v=4",
+ "description": "Correcting Astronomical Bad Pixels in Python",
+ "topics": []
},
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- "url": "https://github.com/Kaixhin/Atari",
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- "avatar": "https://avatars.githubusercontent.com/u/991891?v=4",
- "description": "Persistent advantage learning dueling double DQN for the Arcade Learning Environment",
+ "uid": "github/MOSAICS-NIH/MOSAICS",
+ "url": "https://github.com/MOSAICS-NIH/MOSAICS",
+ "rel": "/software/repository/github/MOSAICS-NIH/MOSAICS",
+ "avatar": "https://avatars.githubusercontent.com/u/113941588?v=4",
+ "description": "A collection of tools for characterizing membrane structure and dynamics within simulated trajectories of molecular systems.",
"topics": [
- "deep-reinforcement-learning",
- "deep-learning"
+ "biophysics",
+ "dynamics",
+ "grid",
+ "lattice",
+ "lipids",
+ "membrane",
+ "mosaics",
+ "simulations",
+ "structure",
+ "nih"
]
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- "description": "Torch implementations of various types of autoencoders",
- "topics": [
- "autoencoder",
- "deep-learning"
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+ "uid": "github/linnarsson-lab/loompy",
+ "url": "https://github.com/linnarsson-lab/loompy",
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+ "avatar": "https://avatars.githubusercontent.com/u/10656411?v=4",
+ "description": "Python implementation of the Loom file format - http://loompy.org",
+ "topics": []
},
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- "description": "Future Gadget Laboratory",
- "topics": [
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- "reproducible-research",
- "reproducible-science"
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+ "uid": "github/aalhossary/pyemgpipeline",
+ "url": "https://github.com/aalhossary/pyemgpipeline",
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+ "avatar": "https://avatars.githubusercontent.com/u/3660195?v=4",
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- "avatar": "https://avatars.githubusercontent.com/u/991891?v=4",
- "description": "Future Gadget Machine",
+ "uid": "github/CITCOM-project/CausalTestingFramework",
+ "url": "https://github.com/CITCOM-project/CausalTestingFramework",
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+ "avatar": "https://avatars.githubusercontent.com/u/76901837?v=4",
+ "description": "A causal inference-driven framework for functional black-box testing of complex software.",
+ "topics": []
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+ {
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+ "url": "https://github.com/minzastro/unidam",
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+ "avatar": "https://avatars.githubusercontent.com/u/7056224?v=4",
+ "description": "UniDAM tool: A Unified tool to estimate Distances, Ages, and Masses of stars from spectrophotometric, astrometric (Gaia) and asteroseismic data",
"topics": [
- "machine-learning",
- "reproducible-research",
- "reproducible-science"
+ "astrophysics",
+ "astronomy",
+ "python",
+ "isochrones"
]
},
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- "url": "https://github.com/Kaixhin/Rainbow",
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- "avatar": "https://avatars.githubusercontent.com/u/991891?v=4",
- "description": "Rainbow: Combining Improvements in Deep Reinforcement Learning",
+ "uid": "github/andreyshabalin/TwinEQTL",
+ "url": "https://github.com/andreyshabalin/TwinEQTL",
+ "rel": "/software/repository/github/andreyshabalin/TwinEQTL",
+ "avatar": "https://avatars.githubusercontent.com/u/17608988?v=4",
+ "description": "TwinMeta: Fast and Powerful Association Analysis for eQTL and GWAS in Twin Studies",
+ "topics": []
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+ "url": "https://github.com/pyBRAvo/pyBRAvo",
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+ "description": null,
+ "topics": []
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+ "url": "https://github.com/NOSALRO/robot_dart",
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+ "avatar": "https://avatars.githubusercontent.com/u/117092888?v=4",
+ "description": "RobotDART: a versatile robot simulator for robotics and machine learning researchers",
"topics": [
- "deep-learning",
- "deep-reinforcement-learning"
+ "dart",
+ "magnum",
+ "eigen3"
]
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- "description": "QhX-Quasar harmonics eXplorer- Python package for detecting oscillations in red noise",
+ "uid": "github/stefanofisc/dartvetter_apj",
+ "url": "https://github.com/stefanofisc/dartvetter_apj",
+ "rel": "/software/repository/github/stefanofisc/dartvetter_apj",
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- "description": "Utility to securely synchronize a Fitbit device with the Fitbit web service",
+ "uid": "github/johentsch/ms3",
+ "url": "https://github.com/johentsch/ms3",
+ "rel": "/software/repository/github/johentsch/ms3",
+ "avatar": "https://avatars.githubusercontent.com/u/42718519?v=4",
+ "description": "A parser for annotated MuseScore 3 files.",
"topics": [
- "python",
- "fitbit",
- "synchronization"
+ "corpus",
+ "corpus-data",
+ "corpus-generator",
+ "corpus-processing",
+ "corpus-tools",
+ "musescore",
+ "musescore2",
+ "musescore3",
+ "musescore4",
+ "music-score",
+ "music-scores",
+ "parser",
+ "sheet-music",
+ "sheet-music-parser",
+ "tsv",
+ "tsv-files",
+ "tsv-format",
+ "xml-parser",
+ "xml-parser-library",
+ "xml-parsing"
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+ "avatar": "https://avatars.githubusercontent.com/u/10964144?v=4",
+ "description": "Bbarolo is a 3D fitting tool to derive the kinematics of galaxies from emission-line observations.",
+ "topics": []
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+ "description": "SIRENA documentation",
+ "topics": []
+ },
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+ "avatar": "https://avatars.githubusercontent.com/u/22940388?v=4",
+ "description": "Data access and visualization for MaNGA. http://sdss-marvin.readthedocs.io/en/latest/",
"topics": [
- "parser",
- "data-science",
- "electrochemistry",
- "chromatography",
- "catalysis"
+ "astronomy",
+ "manga",
+ "marvin",
+ "sdss"
]
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- "description": "Bayesian AGN Decomposition Analysis for SDSS Spectra",
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+ "description": "Use MCMC methods to kinematically estimate the vertical distribution of clouds in the Galactic plane",
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+ "description": "A Bayesian Spectral Line Modeling Framework",
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- "description": "The Causal Rule Ensemble Method",
+ "uid": "github/tvwenger/HII-Region-Models",
+ "url": "https://github.com/tvwenger/HII-Region-Models",
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- "description": "CW Inference in Python",
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- "cosmological-simulations",
- "point-cloud"
+ "gene-ontology",
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+ "regulatory-elements"
]
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+ "description": "Special Structure Detection for Pyomo",
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- "description": "Python based computational for for analyzing quartz crystal microbalance with dissipation (QCM-D) experimental data",
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+ "description": "VesselVio is an open-source application for the analysis and visualization of segmented vasculature datasets",
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+ "chemistry",
+ "electrochemistry",
+ "physics",
+ "data-analysis",
+ "opensource",
+ "battery"
]
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+ "quasigeostrophy",
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+ "sqg",
+ "baroclinic",
+ "geophysical-fluid-dynamics",
+ "fourierflows",
+ "navier-stokes"
]
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+ "description": "mlpack: a scalable C++ machine learning library -- ",
"topics": [
- "genome-annotation",
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- "bacterial-genomes",
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+ "machine-learning-library",
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+ "deep-learning",
+ "nearest-neighbor-search",
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]
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+ "avatar": "https://avatars2.githubusercontent.com/u/4591688?v=4",
+ "description": "R toolkit for the analysis of single-cell chromatin data",
"topics": [
- "antimicrobial-resistance-genes",
- "virulence-genes",
- "contigs",
- "bioinformatics-tool",
- "genomic-regions"
+ "single-cell",
+ "bioinformatics",
+ "atac"
]
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- "description": ":scissors: :zap: Rapid haploid variant calling and core genome alignment",
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+ "description": "Code and analysis for MASON paper",
+ "topics": []
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+ "description": "A code for fast, massively-parallel simulations of two-phase flows with heat transfer",
"topics": [
- "variant-calling",
- "haploid",
- "bacteria",
- "fastq-analysis",
- "snps",
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+ "direct-numerical-simulation",
+ "fortran",
+ "gpu",
+ "high-performance-computing",
+ "multiphase-flow",
+ "turbulence",
+ "computational-fluid-dynamics",
+ "fluid-dynamics",
+ "fluid-simulation"
]
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- "description": ":chart_with_upwards_trend: Automatically optimise three of Velvet's assembly parameters.",
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- "description": "Filter SAM file for soft and hard clipped alignments",
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+ "avatar": "https://avatars.githubusercontent.com/u/20169048?v=4",
+ "description": "Automated pipeline for lens modelling based on lenstronomy.",
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- "description": ":microscope: :leo: Bacterial ribosomal RNA predictor",
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+ "avatar": "https://avatars.githubusercontent.com/u/20169048?v=4",
+ "description": "Lensing Exposure Time Calculator",
+ "topics": []
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+ "description": "Exoplanet vetting",
"topics": [
- "rna",
- "hmmer",
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- "hmm-model",
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- "annotations",
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+ "astronomy",
+ "exoplanets",
+ "verification",
+ "exoplanet-transits"
]
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- "description": ":id: Scan contig files against PubMLST typing schemes",
+ "uid": "github/spacetelescope/spaceKLIP",
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- "illumina-sequencing",
- "pipelines"
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+ "uid": "github/spacetelescope/pystortion",
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+ "rel": "/software/repository/github/spacetelescope/pystortion",
+ "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
+ "description": null,
+ "topics": []
},
{
- "uid": "github/rathnakumars/difference-smoothing",
- "url": "https://github.com/rathnakumars/difference-smoothing",
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- "description": "MATLAB implementation of difference-smoothing algorithm and detailed results obtained by testing the codes on a large sample of simulated light curves from TDC1, described in an article published in MNRAS (arXiv:1704.00706)",
+ "uid": "github/spacetelescope/stsdas_stripped",
+ "url": "https://github.com/spacetelescope/stsdas_stripped",
+ "rel": "/software/repository/github/spacetelescope/stsdas_stripped",
+ "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
+ "description": "STSDAS/TABLES (nonfunctional / for reference only)",
"topics": []
},
{
- "uid": "github/tldr-group/taufactor",
- "url": "https://github.com/tldr-group/taufactor",
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- "avatar": "https://avatars.githubusercontent.com/u/78808638?v=4",
- "description": "TauFactor is a parallelised solver for calculating tortuosity factors from voxel data.",
+ "uid": "github/spacetelescope/hst_cosmic_rays",
+ "url": "https://github.com/spacetelescope/hst_cosmic_rays",
+ "rel": "/software/repository/github/spacetelescope/hst_cosmic_rays",
+ "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
+ "description": null,
"topics": []
},
{
- "uid": "github/tldr-group/samba-web",
- "url": "https://github.com/tldr-group/samba-web",
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- "avatar": "https://avatars.githubusercontent.com/u/78808638?v=4",
- "description": "Local version of samba-web, a trainable segmentation web app with deep learning powered labelling",
- "topics": [
- "materials-science",
- "segment-anything-model",
- "segmentation",
- "webapp"
- ]
+ "uid": "github/spacetelescope/jdaviz",
+ "url": "https://github.com/spacetelescope/jdaviz",
+ "rel": "/software/repository/github/spacetelescope/jdaviz",
+ "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
+ "description": "JWST astronomical data analysis tools in the Jupyter platform",
+ "topics": []
},
{
- "uid": "github/yjx1217/RecombineX",
- "url": "https://github.com/yjx1217/RecombineX",
- "rel": "/software/repository/github/yjx1217/RecombineX",
- "avatar": "https://avatars.githubusercontent.com/u/701942?v=4",
- "description": "A computational framework for tetrad-based genotyping & recombination landscape analysis",
+ "uid": "github/spacetelescope/stginga",
+ "url": "https://github.com/spacetelescope/stginga",
+ "rel": "/software/repository/github/spacetelescope/stginga",
+ "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
+ "description": "Ginga products specific to STScI data analysis.",
"topics": [
- "tetrad",
- "recombination",
- "meiosis",
- "spore"
+ "astronomy",
+ "image",
+ "table",
+ "viewer",
+ "astropy",
+ "ginga"
]
},
{
- "uid": "github/tp2vis/distribute",
- "url": "https://github.com/tp2vis/distribute",
- "rel": "/software/repository/github/tp2vis/distribute",
- "avatar": "https://avatars.githubusercontent.com/u/34458220?v=4",
- "description": null,
+ "uid": "github/spacetelescope/stsynphot_refactor",
+ "url": "https://github.com/spacetelescope/stsynphot_refactor",
+ "rel": "/software/repository/github/spacetelescope/stsynphot_refactor",
+ "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
+ "description": "Synthetic photometry using Astropy for HST and JWST",
"topics": [
- "total",
- "power",
- "to",
- "visibilities",
- "tp2vis",
- "alma",
- "development",
- "study"
+ "astronomy",
+ "python",
+ "astropy",
+ "synthetic-photometry",
+ "synphot",
+ "hst",
+ "jwst"
]
},
{
- "uid": "github/SJaffa/Jplots",
- "url": "https://github.com/SJaffa/Jplots",
- "rel": "/software/repository/github/SJaffa/Jplots",
- "avatar": "https://avatars.githubusercontent.com/u/13678317?v=4",
- "description": "Astrophysical data analysis tool: quantifying the shape of pixelated structures using moments",
+ "uid": "github/spacetelescope/specview",
+ "url": "https://github.com/spacetelescope/specview",
+ "rel": "/software/repository/github/spacetelescope/specview",
+ "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
+ "description": "Archived, see https://github.com/spacetelescope/specviz for future development. Spectrum visualization, manipulation, and fitting",
"topics": [
+ "spectroscopy",
"astronomy",
- "astrophysics",
- "structure",
- "dendrogram",
- "molecular-clouds",
- "filaments"
+ "viewer",
+ "data-analysis"
]
},
{
- "uid": "github/LebeerLab/tidytacos",
- "url": "https://github.com/LebeerLab/tidytacos",
- "rel": "/software/repository/github/LebeerLab/tidytacos",
- "avatar": "https://avatars.githubusercontent.com/u/29303437?v=4",
- "description": "Functions to manipulate and visualize microbial community data",
+ "uid": "github/spacetelescope/imexam",
+ "url": "https://github.com/spacetelescope/imexam",
+ "rel": "/software/repository/github/spacetelescope/imexam",
+ "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
+ "description": "imexam is a python tool for simple image examination, and plotting, with similar functionality to IRAF's imexamine",
"topics": [
- "microbial-communities",
- "microbiome-analysis",
- "r",
- "tidy",
- "visualization"
+ "astronomy",
+ "data-analysis",
+ "viewer",
+ "astropy",
+ "ds9",
+ "ginga"
]
},
{
- "uid": "github/iomega/zenodo-upload",
- "url": "https://github.com/iomega/zenodo-upload",
- "rel": "/software/repository/github/iomega/zenodo-upload",
- "avatar": "https://avatars3.githubusercontent.com/u/39822447?v=4",
- "description": "JS package to create a new version of a Zenodo upload with a file",
- "topics": []
+ "uid": "github/spacetelescope/mirage",
+ "url": "https://github.com/spacetelescope/mirage",
+ "rel": "/software/repository/github/spacetelescope/mirage",
+ "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
+ "description": "This code can be used to generate simulated NIRCam, NIRISS, or FGS data ",
+ "topics": [
+ "astronomy",
+ "simulator",
+ "nircam",
+ "niriss",
+ "fgs"
+ ]
},
{
- "uid": "github/iomega/paired-data-form",
- "url": "https://github.com/iomega/paired-data-form",
- "rel": "/software/repository/github/iomega/paired-data-form",
- "avatar": "https://avatars3.githubusercontent.com/u/39822447?v=4",
- "description": "Linking mas spectra and genomic information to discover new chemistry",
- "topics": []
+ "uid": "github/spacetelescope/astronify",
+ "url": "https://github.com/spacetelescope/astronify",
+ "rel": "/software/repository/github/spacetelescope/astronify",
+ "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
+ "description": "Astronomical data sonification.",
+ "topics": [
+ "astronomy",
+ "sonification"
+ ]
},
{
- "uid": "github/iomega/spec2vec_gnps_data_analysis",
- "url": "https://github.com/iomega/spec2vec_gnps_data_analysis",
- "rel": "/software/repository/github/iomega/spec2vec_gnps_data_analysis",
- "avatar": "https://avatars.githubusercontent.com/u/39822447?v=4",
- "description": "Analysis and benchmarking of mass spectra similarity measures using gnps data set.",
- "topics": []
+ "uid": "github/spacetelescope/synphot_refactor",
+ "url": "https://github.com/spacetelescope/synphot_refactor",
+ "rel": "/software/repository/github/spacetelescope/synphot_refactor",
+ "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
+ "description": "Synthetic photometry using Astropy",
+ "topics": [
+ "astronomy",
+ "astropy",
+ "synthetic-photometry",
+ "python",
+ "synphot"
+ ]
},
{
- "uid": "github/iomega/spec2vec",
- "url": "https://github.com/iomega/spec2vec",
- "rel": "/software/repository/github/iomega/spec2vec",
- "avatar": "https://avatars3.githubusercontent.com/u/39822447?v=4",
- "description": "Word2Vec based similarity measure of mass spectrometry data.",
+ "uid": "github/spacetelescope/specviz",
+ "url": "https://github.com/spacetelescope/specviz",
+ "rel": "/software/repository/github/spacetelescope/specviz",
+ "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
+ "description": "An interactive astronomical 1D spectra analysis tool.",
"topics": [
- "word2vec",
- "mass-spectrometry",
- "fuzzy-matching",
- "fuzzy-search"
+ "astronomy",
+ "spectroscopy",
+ "viewer",
+ "data-analysis",
+ "python"
]
},
{
- "uid": "github/andreyshabalin/TwinEQTL",
- "url": "https://github.com/andreyshabalin/TwinEQTL",
- "rel": "/software/repository/github/andreyshabalin/TwinEQTL",
- "avatar": "https://avatars.githubusercontent.com/u/17608988?v=4",
- "description": "TwinMeta: Fast and Powerful Association Analysis for eQTL and GWAS in Twin Studies",
+ "uid": "github/GRChombo/GRChombo",
+ "url": "https://github.com/GRChombo/GRChombo",
+ "rel": "/software/repository/github/GRChombo/GRChombo",
+ "avatar": "https://avatars.githubusercontent.com/u/11063947?v=4",
+ "description": "An AMR based open-source code for numerical relativity simulations.",
"topics": []
},
{
- "uid": "github/cholla-hydro/cholla",
- "url": "https://github.com/cholla-hydro/cholla",
- "rel": "/software/repository/github/cholla-hydro/cholla",
- "avatar": "https://avatars.githubusercontent.com/u/18468918?v=4",
- "description": "A GPU-based hydro code",
+ "uid": "github/GRChombo/GRDzhadzha",
+ "url": "https://github.com/GRTLCollaboration/GRDzhadzha",
+ "rel": "/software/repository/github/GRChombo/GRDzhadzha",
+ "avatar": "https://avatars.githubusercontent.com/u/11063947?v=4",
+ "description": "A code to evolve matter on curved spacetimes with an analytic time and space dependence, e.g. black holes",
"topics": []
},
{
- "uid": "github/labgem/PPanGGOLiN",
- "url": "https://github.com/labgem/PPanGGOLiN",
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- "avatar": "https://avatars.githubusercontent.com/u/50515420?v=4",
- "description": "Build a partitioned pangenome graph from microbial genomes",
- "topics": [
- "comparative-genomics",
- "bioinformatics",
- "microbial-genomics",
- "microbiology",
- "bacteria",
- "pangenome"
- ]
+ "uid": "github/GRChombo/GRFolres",
+ "url": "https://github.com/GRTLCollaboration/GRFolres",
+ "rel": "/software/repository/github/GRChombo/GRFolres",
+ "avatar": "https://avatars.githubusercontent.com/u/11063947?v=4",
+ "description": "Extension to GRChombo for Modified Gravity simulations",
+ "topics": []
},
{
- "uid": "github/jeschaef/Graph4Med",
- "url": "https://github.com/jeschaef/Graph4Med",
- "rel": "/software/repository/github/jeschaef/Graph4Med",
- "avatar": "https://avatars.githubusercontent.com/u/34156935?v=4",
+ "uid": "github/leprojetcastor/castor",
+ "url": "https://github.com/leprojetcastor/castor",
+ "rel": "/software/repository/github/leprojetcastor/castor",
+ "avatar": "https://avatars.githubusercontent.com/u/75743001?v=4",
"description": null,
"topics": []
},
{
- "uid": "github/opr-group-bnitm/vimop",
- "url": "https://github.com/opr-group-bnitm/vimop",
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- "avatar": "https://avatars.githubusercontent.com/u/153303422?v=4",
- "description": "Nanopore field sequencing pipeline for untargeted virus sequencing",
+ "uid": "github/technic960183/spherimatch",
+ "url": "https://github.com/technic960183/spherimatch",
+ "rel": "/software/repository/github/technic960183/spherimatch",
+ "avatar": "https://avatars.githubusercontent.com/u/48866415?v=4",
+ "description": "A Python package for cross-matching and self-matching in spherical coordinates.",
"topics": []
},
{
- "uid": "github/ycwu1030/EvoEMD",
- "url": "https://github.com/ycwu1030/EvoEMD",
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- "avatar": "https://avatars.githubusercontent.com/u/39174521?v=4",
- "description": "Evolution with an Early Matter-Dominated era",
- "topics": []
+ "uid": "github/bessagroup/f3dasm",
+ "url": "https://github.com/bessagroup/f3dasm",
+ "rel": "/software/repository/github/bessagroup/f3dasm",
+ "avatar": "https://avatars.githubusercontent.com/u/64279108?v=4",
+ "description": "Framework for Data-Driven Design & Analysis of Structures & Materials (F3DASM)",
+ "topics": [
+ "data-driven",
+ "machine-learning",
+ "computational-mechanics",
+ "design-of-experiments",
+ "framework",
+ "materials-science"
+ ]
},
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- "uid": "github/radio-astro-tools/uvcombine",
- "url": "https://github.com/radio-astro-tools/uvcombine",
- "rel": "/software/repository/github/radio-astro-tools/uvcombine",
- "avatar": "https://avatars.githubusercontent.com/u/7228695?v=4",
- "description": "Combine images made with different resolutions, including the \"feathering\" technique for interferometry data.",
- "topics": []
+ "uid": "github/bessagroup/graphorge",
+ "url": "https://github.com/bessagroup/graphorge",
+ "rel": "/software/repository/github/bessagroup/graphorge",
+ "avatar": "https://avatars.githubusercontent.com/u/64279108?v=4",
+ "description": "Graphorge: Open-source forge of Graph Neural Networks",
+ "topics": [
+ "graph-neural-network",
+ "sci-ml",
+ "machine-learning",
+ "nvidia-gpu",
+ "pytorch",
+ "deep-learning"
+ ]
},
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- "uid": "github/radio-astro-tools/spectral-cube",
- "url": "https://github.com/radio-astro-tools/spectral-cube",
- "rel": "/software/repository/github/radio-astro-tools/spectral-cube",
- "avatar": "https://avatars.githubusercontent.com/u/7228695?v=4",
- "description": "Library for reading and analyzing astrophysical spectral data cubes",
- "topics": []
+ "uid": "github/Valires/er-evaluation",
+ "url": "https://github.com/Valires/er-evaluation",
+ "rel": "/software/repository/github/Valires/er-evaluation",
+ "avatar": "https://avatars.githubusercontent.com/u/128562477?v=4",
+ "description": "An End-to-End Evaluation Framework for Entity Resolution Systems",
+ "topics": [
+ "data-science",
+ "deduplication",
+ "disambiguation",
+ "duplicate-detection",
+ "entity-resolution",
+ "evaluation",
+ "fuzzy-matching",
+ "matching",
+ "ml-evaluation",
+ "ml-testing",
+ "record-linkage",
+ "statistics",
+ "inventor-name-disambiguation",
+ "author-name-disambiguation"
+ ]
},
{
- "uid": "github/radio-astro-tools/pvextractor",
- "url": "https://github.com/radio-astro-tools/pvextractor",
- "rel": "/software/repository/github/radio-astro-tools/pvextractor",
- "avatar": "https://avatars.githubusercontent.com/u/7228695?v=4",
- "description": "Position-Velocity diagram extract (but it can slice out other things too)",
+ "uid": "github/joe-antognini/kozai",
+ "url": "https://github.com/joe-antognini/kozai",
+ "rel": "/software/repository/github/joe-antognini/kozai",
+ "avatar": "https://avatars.githubusercontent.com/u/7061933?v=4",
+ "description": "A Python package to evolve hierarchical triples in the secular approximation",
"topics": []
},
{
- "uid": "github/UgoLomoio/gtex_visualizer",
- "url": "https://github.com/UgoLomoio/gtex_visualizer",
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- "avatar": "https://avatars.githubusercontent.com/u/87126937?v=4",
- "description": null,
- "topics": []
+ "uid": "github/brian-team/brian2",
+ "url": "https://github.com/brian-team/brian2",
+ "rel": "/software/repository/github/brian-team/brian2",
+ "avatar": "https://avatars.githubusercontent.com/u/2292949?v=4",
+ "description": "Brian is a free, open source simulator for spiking neural networks. ",
+ "topics": [
+ "python",
+ "neuroscience",
+ "science",
+ "differential-equations",
+ "spiking-neural-networks",
+ "biological-simulations",
+ "code-generation",
+ "simulation-framework",
+ "brian",
+ "computational-neuroscience",
+ "brian2"
+ ]
},
{
- "uid": "github/stamatak/AxPcoords.dist",
- "url": "https://github.com/stamatak/AxPcoords.dist",
- "rel": "/software/repository/github/stamatak/AxPcoords.dist",
- "avatar": "https://avatars.githubusercontent.com/u/880890?v=4",
- "description": "AxPcoords implementation ",
+ "uid": "github/andreaminio/haplosync",
+ "url": "https://github.com/andreaminio/HaploSync",
+ "rel": "/software/repository/github/andreaminio/haplosync",
+ "avatar": "https://avatars.githubusercontent.com/u/33559900?v=4",
+ "description": "Tools for haplotype-wise reconstruction of pseudomolecules",
"topics": []
},
{
- "uid": "github/stamatak/ExaML",
- "url": "https://github.com/stamatak/ExaML",
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- "avatar": "https://avatars.githubusercontent.com/u/880890?v=4",
- "description": "Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI",
+ "uid": "github/gpantel/MolPainter",
+ "url": "https://github.com/gpantel/MolPainter",
+ "rel": "/software/repository/github/gpantel/MolPainter",
+ "avatar": "https://avatars.githubusercontent.com/u/5740723?v=4",
+ "description": "A Tool for Drawing Complex Planar Molecular Systems of Arbitrary Composition and Placement",
"topics": []
},
{
- "uid": "github/OxES/k2sc",
- "url": "https://github.com/OxES/k2sc",
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- "avatar": "https://avatars.githubusercontent.com/u/2815367?v=4",
- "description": "K2 systematics correction using Gaussian processes",
- "topics": [
- "exoplanets",
- "exoplanet-transits",
- "kepler",
- "k2",
- "k2-light-curves",
- "astronomy",
- "gaussian-processes",
- "mast-light-curve"
- ]
+ "uid": "github/davidogara/hetGPy",
+ "url": "https://github.com/davidogara/hetGPy",
+ "rel": "/software/repository/github/davidogara/hetGPy",
+ "avatar": "https://avatars.githubusercontent.com/u/21281981?v=4",
+ "description": "Python implementation of the hetGP R package",
+ "topics": []
},
{
- "uid": "github/tomlouden/spiderman",
- "url": "https://github.com/tomlouden/SPIDERMAN",
- "rel": "/software/repository/github/tomlouden/spiderman",
- "avatar": "https://avatars.githubusercontent.com/u/6517539?v=4",
- "description": "A fast code to simulate secondary transits and phase curves",
+ "uid": "github/mawenlong2016/DeepAnnotation",
+ "url": "https://github.com/mawenlong2016/DeepAnnotation",
+ "rel": "/software/repository/github/mawenlong2016/DeepAnnotation",
+ "avatar": "https://avatars.githubusercontent.com/u/38175438?v=4",
+ "description": "a novel interpretable DL-based genomic prediction model that integrates comprehensive species- and tissue-level transcriptional regulatory functional annotations to predict phenotypes",
"topics": []
},
{
- "uid": "github/paucablop/chemotools",
- "url": "https://github.com/paucablop/chemotools",
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- "description": "Integrate your chemometric tools with the scikit-learn API \ud83e\uddea \ud83e\udd16 ",
- "topics": [
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- "machine-learning",
- "python",
- "scikit-learn",
- "sklearn",
- "spectra",
- "hacktoberfest",
- "artificial-intelligence",
- "autoencoders",
- "deep-learning",
- "ir-spectroscopy",
- "multivariate-analysis",
- "raman-spectroscopy",
- "spectroscopy",
- "nir-spectroscopy"
- ]
+ "uid": "github/coljac/sensie",
+ "url": "https://github.com/coljac/sensie",
+ "rel": "/software/repository/github/coljac/sensie",
+ "avatar": "https://avatars3.githubusercontent.com/u/191407?v=4",
+ "description": "Toolset for probing the sensitivity of a deep neural network model to various properties of the data.",
+ "topics": []
},
{
- "uid": "github/mirapy-org/mirapy",
- "url": "https://github.com/mirapy-org/mirapy",
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- "avatar": "https://avatars.githubusercontent.com/u/49879504?v=4",
- "description": "MiraPy: A Python package for Deep Learning in Astronomy",
+ "uid": "github/linuxscout/pyarabic",
+ "url": "https://github.com/linuxscout/pyarabic",
+ "rel": "/software/repository/github/linuxscout/pyarabic",
+ "avatar": "https://avatars.githubusercontent.com/u/450792?v=4",
+ "description": "pyarabic",
"topics": [
- "deep-learning",
- "astronomy",
- "keras",
- "machine-learning",
- "classification",
- "autoencoder",
- "curve-fitting",
- "ogle",
- "htru1",
- "x-ray-binaries",
- "image-reconstruction",
- "variable-stars"
+ "nlp-library",
+ "arabic-language",
+ "text-processing"
]
},
{
- "uid": "github/tensorly/viz",
- "url": "https://github.com/tensorly/viz",
- "rel": "/software/repository/github/tensorly/viz",
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- "description": "Easy visualization and evaluation of matrix and tensor factorization models",
- "topics": [
- "tensor-methods",
- "tensorly",
- "tensors",
- "visualization"
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]
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+ "py-sphviewer",
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- "description": "Differentiable Likelihood for CMB Analysis",
+ "uid": "github/salilab/IHMValidation",
+ "url": "https://github.com/salilab/IHMValidation",
+ "rel": "/software/repository/github/salilab/IHMValidation",
+ "avatar": "https://avatars.githubusercontent.com/u/1877957?v=4",
+ "description": "Validation software for integrative models deposited to PDB",
"topics": []
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+ "rel": "/software/repository/github/cumbof/honto",
+ "avatar": "https://avatars.githubusercontent.com/u/3764656?v=4",
+ "description": "A novel method for assessing and measuring homophily in networks",
"topics": [
- "bioinformatics",
- "filter",
- "filter-expression",
- "vcf",
- "vcf-filtering"
+ "graphs",
+ "homophily",
+ "networks"
]
},
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- "url": "https://github.com/astro-transients/tilepy",
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- "avatar": "https://avatars.githubusercontent.com/u/125971930?v=4",
- "description": "A Tool for Observation Scheduling in Poorly Localized Events",
- "topics": []
+ "uid": "github/cumbof/MetaSBT-DBs",
+ "url": "https://github.com/cumbof/MetaSBT-DBs",
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+ "avatar": "https://avatars.githubusercontent.com/u/3764656?v=4",
+ "description": "MetaSBT public databases",
+ "topics": [
+ "databases",
+ "metagenome-assembled-genomes",
+ "metagenomics",
+ "reference-genomes",
+ "sequence-bloom-trees"
+ ]
},
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- "avatar": "https://avatars.githubusercontent.com/u/55585244?v=4",
- "description": "a toolset designed for the processing and analysis of eCLIP/iCLIP dataset",
+ "uid": "github/artefactory/woodtapper",
+ "url": "https://github.com/artefactory/woodtapper",
+ "rel": "/software/repository/github/artefactory/woodtapper",
+ "avatar": "https://avatars.githubusercontent.com/u/86767100?v=4",
+ "description": "WoodTapper \u2014 a Python toolbox for interpretable and explainable tree ensembles.",
"topics": [
- "bioinformatics",
- "ngs-analysis",
- "eclip"
+ "research-center",
+ "machine-learning",
+ "classification",
+ "regression",
+ "tabular-data"
]
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- "uid": "github/mtsch/Ripserer.jl",
- "url": "https://github.com/mtsch/Ripserer.jl",
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- "avatar": "https://avatars0.githubusercontent.com/u/7646525?v=4",
- "description": "Ripser and Ripserer",
+ "uid": "github/artefactory/choice-learn",
+ "url": "https://github.com/artefactory/choice-learn",
+ "rel": "/software/repository/github/artefactory/choice-learn",
+ "avatar": "https://avatars.githubusercontent.com/u/86767100?v=4",
+ "description": "Discrete choice modeling in Python with large datasets & models - Assortment & Pricing Optimization .",
"topics": [
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- "topological-data-analysis",
- "homology",
- "cohomology",
- "tda",
- "ripser",
- "julia",
- "topology"
+ "assortment",
+ "choice",
+ "discrete",
+ "learning",
+ "machine",
+ "ml",
+ "model",
+ "supermarket",
+ "gurobi",
+ "optimization",
+ "or-tools",
+ "pricing",
+ "tensorflow",
+ "deep",
+ "neural-networks",
+ "conditional-logit-model",
+ "rum",
+ "choice-modeling"
]
},
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- "rel": "/software/repository/github/alerpaschoal/CODARFE",
- "avatar": "https://avatars.githubusercontent.com/u/38994165?v=4",
- "description": null,
+ "uid": "github/nedRad88/SCALAR",
+ "url": "https://github.com/nedRad88/SCALAR",
+ "rel": "/software/repository/github/nedRad88/SCALAR",
+ "avatar": "https://avatars0.githubusercontent.com/u/12820298?v=4",
+ "description": "SCALAR - Streaming ChALlenge plAtfoRm",
"topics": []
},
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- "url": "https://github.com/yuliang419/Astronet-Vetting",
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- "avatar": "https://avatars.githubusercontent.com/u/10563003?v=4",
- "description": "A Neural Network for TESS Light Curve Vetting",
+ "uid": "github/yjx1217/RecombineX",
+ "url": "https://github.com/yjx1217/RecombineX",
+ "rel": "/software/repository/github/yjx1217/RecombineX",
+ "avatar": "https://avatars.githubusercontent.com/u/701942?v=4",
+ "description": "A computational framework for tetrad-based genotyping & recombination landscape analysis",
+ "topics": [
+ "tetrad",
+ "recombination",
+ "meiosis",
+ "spore"
+ ]
+ },
+ {
+ "uid": "github/fccoelho/epimodels",
+ "url": "https://github.com/fccoelho/epimodels",
+ "rel": "/software/repository/github/fccoelho/epimodels",
+ "avatar": "https://avatars.githubusercontent.com/u/140123?v=4",
+ "description": "Library for simulation with mathematical epidemiology models",
"topics": []
},
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- "url": "https://github.com/yuliang419/Astronet-Triage",
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- "avatar": "https://avatars.githubusercontent.com/u/10563003?v=4",
- "description": "A Neural Network for TESS Light Curve Triage",
+ "uid": "github/fccoelho/epigrass",
+ "url": "https://github.com/fccoelho/epigrass",
+ "rel": "/software/repository/github/fccoelho/epigrass",
+ "avatar": "https://avatars.githubusercontent.com/u/140123?v=4",
+ "description": "Epidemiological Geo-referenced Analysis and Simulation system",
"topics": []
},
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- "url": "https://github.com/TRI-AMDD/GMP-featurizer",
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- "avatar": "https://avatars.githubusercontent.com/u/62159728?v=4",
- "description": "Feature calculator for GMP features",
+ "uid": "github/julianreul/mode_behave",
+ "url": "https://github.com/julianreul/mode_behave",
+ "rel": "/software/repository/github/julianreul/mode_behave",
+ "avatar": "https://avatars.githubusercontent.com/u/42872728?v=4",
+ "description": "A Python package for estimating mixed logit models with nonparametric distributions",
"topics": []
},
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- "url": "https://github.com/vprusso/toqito",
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- "avatar": "https://avatars.githubusercontent.com/u/1562214?v=4",
- "description": "|toqito> (Theory of Quantum Information Toolkit) in Python :snake:",
+ "uid": "github/karpov-sv/stdweb",
+ "url": "https://github.com/karpov-sv/stdweb",
+ "rel": "/software/repository/github/karpov-sv/stdweb",
+ "avatar": "https://avatars.githubusercontent.com/u/6555548?v=4",
+ "description": "STDWeb - Simple Transient Detection for the Web",
+ "topics": []
+ },
+ {
+ "uid": "github/UNSW-CEEM/NEMSEER",
+ "url": "https://github.com/UNSW-CEEM/NEMSEER",
+ "rel": "/software/repository/github/UNSW-CEEM/NEMSEER",
+ "avatar": "https://avatars.githubusercontent.com/u/33536784?v=4",
+ "description": "A package for downloading and handling forecasts for the National Electricity Market (NEM) from the Australian Energy Market Operator (AEMO).",
"topics": [
- "quantum-computing",
+ "energy",
"python",
- "quantum-information",
- "matrix-analysis",
- "python-3",
- "unitaryhack",
- "physics",
- "quantum"
+ "aemo",
+ "pasa",
+ "forecast",
+ "national-electricity-market",
+ "nem",
+ "pre-dispatch",
+ "australia",
+ "nemweb"
]
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- "avatar": "https://avatars.githubusercontent.com/u/54479818?v=4",
- "description": "Diffusion-based Spatial Filtering of Gridded Data",
+ "uid": "github/UNSW-CEEM/nempy",
+ "url": "https://github.com/UNSW-CEEM/nempy",
+ "rel": "/software/repository/github/UNSW-CEEM/nempy",
+ "avatar": "https://avatars.githubusercontent.com/u/33536784?v=4",
+ "description": "A flexible tool kit for modelling Australia's National Electricity Market dispatch procedure.",
"topics": []
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- "url": "https://github.com/EGaraldi/corecon",
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- "avatar": "https://avatars.githubusercontent.com/u/13069963?v=4",
- "description": "User-friendly collection of Reionization-related constraints",
+ "uid": "github/tanhevg/GpABC.jl",
+ "url": "https://github.com/tanhevg/GpABC.jl",
+ "rel": "/software/repository/github/tanhevg/GpABC.jl",
+ "avatar": "https://avatars.githubusercontent.com/u/5775458?v=4",
+ "description": null,
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- "avatar": "https://avatars.githubusercontent.com/u/13069963?v=4",
- "description": "The ZInCo code for manipulating GADGET initial conditions",
+ "uid": "github/webbjj/clustertools",
+ "url": "https://github.com/webbjj/clustertools",
+ "rel": "/software/repository/github/webbjj/clustertools",
+ "avatar": "https://avatars.githubusercontent.com/u/8258656?v=4",
+ "description": "A Python package with tools for analysing star clusters.",
"topics": []
},
{
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- "url": "https://github.com/vgteam/vg",
- "rel": "/software/repository/github/vgteam/vg#vg",
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- "description": "tools for working with genome variation graphs",
- "topics": [
- "variation-graph",
- "graph",
- "genome-graph",
- "genomics",
- "dna"
- ]
+ "uid": "github/webbjj/m2mcluster",
+ "url": "https://github.com/webbjj/m2mcluster",
+ "rel": "/software/repository/github/webbjj/m2mcluster",
+ "avatar": "https://avatars.githubusercontent.com/u/8258656?v=4",
+ "description": "A code for made to measure modelling of star clusters",
+ "topics": []
},
{
- "uid": "github/vgteam/vg",
- "url": "https://github.com/vgteam/vg",
- "rel": "/software/repository/github/vgteam/vg",
- "avatar": "https://avatars.githubusercontent.com/u/15925452?v=4",
- "description": "tools for working with genome variation graphs",
- "topics": [
- "variation-graph",
- "graph",
- "genome-graph",
- "genomics",
- "dna"
- ]
+ "uid": "github/alexfields/ORF-RATER",
+ "url": "https://github.com/alexfields/ORF-RATER",
+ "rel": "/software/repository/github/alexfields/ORF-RATER",
+ "avatar": "https://avatars.githubusercontent.com/u/5758587?v=4",
+ "description": "Regression-based annotation of protein-coding sequences from ribosome profiling data",
+ "topics": []
},
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- "uid": "github/algolab/shark",
- "url": "https://github.com/AlgoLab/shark",
- "rel": "/software/repository/github/algolab/shark",
- "avatar": "https://avatars.githubusercontent.com/u/449800?v=4",
- "description": "Mapping-free software for fishing relevant reads in an RNA-Seq sample",
- "topics": [
- "bioinformatics",
- "rna-seq",
- "alignment-free",
- "filtering"
- ]
+ "uid": "github/LTLA/basilisk",
+ "url": "https://github.com/LTLA/basilisk",
+ "rel": "/software/repository/github/LTLA/basilisk",
+ "avatar": "https://avatars.githubusercontent.com/u/8166669?v=4",
+ "description": "Clone of the Bioconductor repository for the basilisk package.",
+ "topics": []
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- "url": "https://github.com/luntergroup/octopus",
- "rel": "/software/repository/github/luntergroup/octopus",
- "avatar": "https://avatars.githubusercontent.com/u/12530086?v=4",
- "description": "Bayesian haplotype-based mutation calling",
- "topics": [
- "genomics",
- "variant-calling",
- "bioinformatics",
- "variants",
- "haplotypes",
- "somatic-variants",
- "de-novo-mutation",
- "phasing",
- "single-cell"
- ]
+ "uid": "github/LTLA/gesel.js",
+ "url": "https://github.com/LTLA/gesel.js",
+ "rel": "/software/repository/github/LTLA/gesel.js",
+ "avatar": "https://avatars.githubusercontent.com/u/8166669?v=4",
+ "description": "Client-side gene set queries.",
+ "topics": []
},
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- "uid": "github/bthorne93/PySM_public",
- "url": "https://github.com/bthorne93/PySM_public",
- "rel": "/software/repository/github/bthorne93/PySM_public",
- "avatar": "https://avatars.githubusercontent.com/u/16899444?v=4",
- "description": "PySM: Software for simulating the Galactic microwave sky",
+ "uid": "github/sjteresi/TE_Density",
+ "url": "https://github.com/sjteresi/TE_Density",
+ "rel": "/software/repository/github/sjteresi/TE_Density",
+ "avatar": "https://avatars.githubusercontent.com/u/27462523?v=4",
+ "description": "Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-022-00264-4",
"topics": [
- "dust",
- "polarization",
- "planck",
- "intensity",
- "ame",
- "sky",
- "cmb"
+ "transposable-elements",
+ "genome"
]
},
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- "uid": "github/GalSim-developers/GalSim",
- "url": "https://github.com/GalSim-developers/GalSim",
- "rel": "/software/repository/github/GalSim-developers/GalSim",
- "avatar": "https://avatars.githubusercontent.com/u/1462196?v=4",
- "description": "The modular galaxy image simulation toolkit. Documentation:",
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+ "url": "https://github.com/jcombs1/blasr",
+ "rel": "/software/repository/github/jcombs1/blasr",
+ "avatar": "https://avatars.githubusercontent.com/u/3442275?v=4",
+ "description": "BLASR: The PacBio\u00ae long read aligner",
+ "topics": []
+ },
+ {
+ "uid": "github/AKHughes1994/polkat",
+ "url": "https://github.com/AKHughes1994/polkat",
+ "rel": "/software/repository/github/AKHughes1994/polkat",
+ "avatar": "https://avatars.githubusercontent.com/u/49698839?v=4",
+ "description": "Repository of tools and scripts for short track (full polarisation) calibration and imaging with MeerKAT (and possibly other linear-feed interferometers). Devloped as a part of the X-KAT collaboration. ",
+ "topics": []
+ },
+ {
+ "uid": "github/babinyurii/recan",
+ "url": "https://github.com/babinyurii/recan",
+ "rel": "/software/repository/github/babinyurii/recan",
+ "avatar": "https://avatars.githubusercontent.com/u/28758465?v=4",
+ "description": "genetic distance plotting for recombination events analysis",
"topics": [
+ "virology",
+ "bioinformatics",
"python",
- "c-plus-plus",
- "astronomy",
- "galaxy",
- "simulation",
- "simulate-images",
- "weaklensing",
- "lsst",
- "des",
- "wfirst",
- "euclid"
+ "genetic-distances",
+ "dna-recombination",
+ "alignment",
+ "recombination-events",
+ "distance-plots"
]
},
{
- "uid": "github/Ciela-Institute/caustics",
- "url": "https://github.com/Ciela-Institute/caustics",
- "rel": "/software/repository/github/Ciela-Institute/caustics",
- "avatar": "https://avatars.githubusercontent.com/u/110192370?v=4",
- "description": "A gravitational lensing simulator for the machine learning era.",
+ "uid": "github/opencollab/arpack-ng",
+ "url": "https://github.com/opencollab/arpack-ng",
+ "rel": "/software/repository/github/opencollab/arpack-ng",
+ "avatar": "https://avatars.githubusercontent.com/u/7782996?v=4",
+ "description": "Collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.",
"topics": [
- "gravitational-lensing",
- "pytorch"
+ "eigenvalue",
+ "linear-algebra",
+ "arpack",
+ "parpack"
]
},
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- "uid": "github/tscnlab/LightLogR",
- "url": "https://github.com/tscnlab/LightLogR",
- "rel": "/software/repository/github/tscnlab/LightLogR",
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- "description": "R package for processing and analysing light logger and optical radiation dosimeter data",
- "topics": [
- "dosimetry",
- "light",
- "rstats-package",
- "time-series-analysis",
- "wearable-devices",
- "wearable-sensors"
- ]
+ "uid": "github/calboo/wigglewave",
+ "url": "https://github.com/calboo/Wigglewave",
+ "rel": "/software/repository/github/calboo/wigglewave",
+ "avatar": "https://avatars.githubusercontent.com/u/33519577?v=4",
+ "description": "Wigglewave is a FORTRAN code that uses an RK4 finite difference method to solve the linearised governing equations for Torsional Alfv\u00e9n Waves (TAWs) propagating in a plasma with negligible plasma beta and in a force-free axisymmetric magnetic field, with no azimuthal component, embedded in a high density divergent tube structure.",
+ "topics": []
},
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- "uid": "github/christinahedges/TESS-SIP",
- "url": "https://github.com/christinahedges/TESS-SIP",
- "rel": "/software/repository/github/christinahedges/TESS-SIP",
- "avatar": "https://avatars.githubusercontent.com/u/14965634?v=4",
- "description": "Long term rotation period finding tool for NASA's TESS mission",
+ "uid": "github/calboo/Potential_Field_Calculator",
+ "url": "https://github.com/calboo/Potential_Field_Calculator",
+ "rel": "/software/repository/github/calboo/Potential_Field_Calculator",
+ "avatar": "https://avatars.githubusercontent.com/u/33519577?v=4",
+ "description": "A collection of codes for generating and visualising potential magnetic fields. If this numerical code is used, authors kindly request an acknowledgment via citation of paper https://www.aanda.org/articles/aa/full_html/2019/05/aa34684-18/aa34684-18.html",
"topics": []
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- "avatar": "https://avatars.githubusercontent.com/u/14965634?v=4",
- "description": "Find the contaminant transiting source in Kepler, K2 or TESS data.",
+ "uid": "github/calboo/TAWAS",
+ "url": "https://github.com/calboo/TAWAS",
+ "rel": "/software/repository/github/calboo/TAWAS",
+ "avatar": "https://avatars.githubusercontent.com/u/33519577?v=4",
+ "description": "TAWAS is an IDL script for solving the wave equation for torsional Alfv\u00e8n waves in a viscous plasma. The background magnetic field is axisymmetric and force-free with no azimuthal component and the plasma beta is assumed to be negligable. The solution is calculated using the analytical formula presented in https://academic.oup.com/mnras/article-abstract/510/2/1910/6449388?redirectedFrom=fulltext. ",
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- "url": "https://github.com/ModellingWebLab/chaste-codegen",
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- "avatar": "https://avatars.githubusercontent.com/u/29707434?v=4",
- "description": "Code generation for Chaste based on cellmlmanip",
+ "uid": "github/nimble-dev/nimbleHMC",
+ "url": "https://github.com/nimble-dev/nimbleHMC",
+ "rel": "/software/repository/github/nimble-dev/nimbleHMC",
+ "avatar": "https://avatars.githubusercontent.com/u/7871767?v=4",
+ "description": "HMC and other derivative-based MCMC sampling algorithms for the nimble package",
"topics": []
},
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- "url": "https://github.com/arabic-digital-humanities/adhtools",
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- "avatar": "https://avatars3.githubusercontent.com/u/35798486?v=4",
- "description": "Scripts for manipulating Arabic texts",
+ "uid": "github/AlexMaraio/WeakLensingQML",
+ "url": "https://github.com/AlexMaraio/WeakLensingQML",
+ "rel": "/software/repository/github/AlexMaraio/WeakLensingQML",
+ "avatar": "https://avatars.githubusercontent.com/u/9391958?v=4",
+ "description": "Code applying the Quadratic Maximum Likelihood estimator to Weak Lensing",
"topics": []
},
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- "url": "https://github.com/varchasgopalaswamy/AutoUncertainties",
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- "avatar": "https://avatars.githubusercontent.com/u/2359219?v=4",
- "description": "Drop-in Uncertainty Propagation with Automatic Differentiation",
- "topics": []
+ "uid": "github/kylejgillett/sounderpy",
+ "url": "https://github.com/kylejgillett/sounderpy",
+ "rel": "/software/repository/github/kylejgillett/sounderpy",
+ "avatar": "https://avatars.githubusercontent.com/u/100786530?v=4",
+ "description": "SounderPy is an open-source Python package for retrieving, processing, and visualizing atmospheric sounding data.",
+ "topics": [
+ "data-analysis-python",
+ "meteorology",
+ "python",
+ "weather",
+ "weather-data",
+ "atmospheric-science",
+ "atmospheric-sciences"
+ ]
},
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@@ -37232,3903 +37912,4139 @@
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+ "planet",
+ "star",
+ "astrophysics",
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+ "description": "TensoriAl Classification of Hydrodynamic Elements",
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+ "sph",
+ "simulation",
+ "tensor",
+ "hydrodynamics"
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+ "description": "A Python framework for agent-based simulations of (radio) SETI observations",
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+ "agent-based",
+ "simulator",
+ "extraterrestrial",
+ "intelligence"
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+ "description": "pyDIA is a modular python package for performing star detection, difference imaging and photometry on astronomical images.",
"topics": []
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- "description": "Coupled geophysical-geochemical-orbital evolution model of icy worlds.",
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+ "url": "https://github.com/MichaelDAlbrow/CMDFitter",
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+ "avatar": "https://avatars.githubusercontent.com/u/24738658?v=4",
+ "description": "Fit a probabilistic generative model to a colour-magnitude diagram.",
"topics": []
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- "description": "An implementation of chunked, compressed, N-dimensional arrays for Python.",
- "topics": []
+ "uid": "github/jumphone/inferloop",
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+ "avatar": "https://avatars.githubusercontent.com/u/14286721?v=4",
+ "description": "InferLoop: leveraging single-cell chromatin accessibility for the signal of chromatin loop",
+ "topics": [
+ "chromatin-structure",
+ "scatac-seq",
+ "single-cell-3d-genome-structure",
+ "single-cell-chromatin-accessibility",
+ "single-cell-multi-omics",
+ "spatial-chromatin-accessibility"
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+ "description": "Version 2.1 of the U.S. Navy Long Wave Propagation Capability code with alterations for running as a MATLAB function. The altered version has most warning and error reporting removed.",
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+ "rel": "/software/repository/github/natir/rustyread",
+ "avatar": "https://avatars.githubusercontent.com/u/3991375?v=4",
+ "description": "A long read simulator based on badread idea",
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- "filter",
- "ngs",
"bioinformatics",
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- "sequencing",
- "illumina",
- "polyg",
- "duplication",
- "merging"
+ "long-reads"
]
},
{
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+ "avatar": "https://avatars.githubusercontent.com/u/3991375?v=4",
+ "description": "Convert vcf in parquet ",
"topics": []
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- "description": "An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.",
+ "uid": "github/natir/yacrd",
+ "url": "https://github.com/natir/yacrd",
+ "rel": "/software/repository/github/natir/yacrd",
+ "avatar": "https://avatars.githubusercontent.com/u/3991375?v=4",
+ "description": "Yet Another Chimeric Read Detector",
"topics": [
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- "sars-cov-2",
- "hcov",
- "2019-ncov",
- "sequencing",
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- "covid",
- "viral-infectious-diseases",
- "viral",
- "virus",
- "microbial-sequences",
- "meta-genomics",
- "visualization"
+ "long-reads",
+ "sequence",
+ "chimera"
]
},
{
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- "description": "A fast lossless FASTQ compressor with ultra-high compression ratio",
+ "uid": "github/mongibellili/QuantizedSystemSolver.jl",
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+ "avatar": "https://avatars.githubusercontent.com/u/59377156?v=4",
+ "description": "This is an ODE solver that implements the quantized state system methods: An approach that builds the solution by updating the system variables independently.",
"topics": []
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- "description": "Gamma-ray burst analysis library",
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+ "uid": "github/918particle/AskaryanModule",
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+ "rel": "/software/repository/github/918particle/AskaryanModule",
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+ "topics": []
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- "avatar": "https://avatars.githubusercontent.com/u/10982870?v=4",
- "description": "A repo for the SciCrunch antibody registry portal ",
+ "uid": "github/sevimcengiz/Oryx-MRSI",
+ "url": "https://github.com/sevimcengiz/Oryx-MRSI",
+ "rel": "/software/repository/github/sevimcengiz/Oryx-MRSI",
+ "avatar": "https://avatars.githubusercontent.com/u/5468765?v=4",
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- "description": "Fully automated Gaussian decomposition package for emission line spectra",
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+ "avatar": "https://avatars3.githubusercontent.com/u/53044821?v=4",
+ "description": "A transit modelling Python package for asymmetric light curves",
+ "topics": []
+ },
+ {
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+ "url": "https://github.com/dbuscher/pois",
+ "rel": "/software/repository/github/dbuscher/pois",
+ "avatar": "https://avatars.githubusercontent.com/u/1148470?v=4",
+ "description": "Python framework simulating the data from a ground-based optical interferometer",
+ "topics": []
+ },
+ {
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+ "url": "https://github.com/elixir-europe/rdmkit",
+ "rel": "/software/repository/github/elixir-europe/rdmkit",
+ "avatar": "https://avatars.githubusercontent.com/u/18418326?v=4",
+ "description": "ELIXIR Research Data Management Toolkit - Find the answers to your research data management questions here.",
"topics": [
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- "python-packages",
- "spectra"
+ "research",
+ "data-management",
+ "rdm",
+ "toolkit"
]
},
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+ "rel": "/software/repository/github/rhyspoulton/WhereWolf",
+ "avatar": "https://avatars.githubusercontent.com/u/13027948?v=4",
+ "description": "Galaxy/(sub)Halo ghosting tool for N-body simulations",
"topics": []
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- "description": "Public repository of the Multi_CLASS code",
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+ "url": "https://github.com/rhyspoulton/OrbWeaver",
+ "rel": "/software/repository/github/rhyspoulton/OrbWeaver",
+ "avatar": "https://avatars.githubusercontent.com/u/13027948?v=4",
+ "description": "Galaxy/(sub)halo orbital processing tool",
"topics": []
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- "description": "Code Repository for `Where is Waldo (and his friends)? A comparison of anomaly detection algorithms for time-domain astronomy`",
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+ "url": "https://github.com/dylancromer/maszcal",
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+ "avatar": "https://avatars.githubusercontent.com/u/24197261?v=4",
+ "description": "Mass calibrations for thermal-SZ clusters",
"topics": []
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- "java",
- "hope",
- "nested-sampling",
- "test-harness",
- "pypi",
- "exercise"
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+ "uid": "github/dylancromer/ostrich",
+ "url": "https://github.com/dylancromer/ostrich",
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+ "avatar": "https://avatars.githubusercontent.com/u/24197261?v=4",
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+ "topics": []
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- "description": "PowNet: Network-constrained Unit Commitment / Economic Dispatch model in Python",
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+ "url": "https://github.com/qurit/rt-utils",
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+ "avatar": "https://avatars.githubusercontent.com/u/58281965?v=4",
+ "description": "A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs. ",
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- "unit-commitment",
- "economic-dispatch",
- "transmission",
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- "water-energy-nexus",
- "python",
- "dispatchable-units",
- "renewable-resources",
- "electricity-supply",
- "substations"
+ "dicom",
+ "rtstruct",
+ "mask",
+ "roi",
+ "pydicom",
+ "ai",
+ "medical-imaging",
+ "medical-image-processing",
+ "nuclear-medicine",
+ "typed",
+ "rt-structs",
+ "binary-masks",
+ "rt-utils"
]
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- "description": "biopeaks: a graphical user interface for feature extraction from heart- and breathing biosignals",
+ "uid": "github/tongzhouxu/mashpit",
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+ "rel": "/software/repository/github/tongzhouxu/mashpit",
+ "avatar": "https://avatars.githubusercontent.com/u/55856334?v=4",
+ "description": ":pencil: Sketch-based surveillance platform",
+ "topics": []
+ },
+ {
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+ "url": "https://github.com/metagentools/GraphBin",
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+ "description": "GraphBin: Refined binning of metagenomic contigs using assembly graphs",
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- "gui",
- "heart",
- "peak-detection",
- "heart-rate",
- "breathing-rate",
- "edf",
- "electrophysiology",
- "ppg"
+ "metagenomics",
+ "binning",
+ "contigs",
+ "assembly-graph",
+ "label-propagation"
]
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+ "avatar": "https://avatars.githubusercontent.com/u/10865030?v=4",
+ "description": "Package with helper functions to load, manage and analyze hydrometeorological data from Central Asia",
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- "description": "A script to run the X-shooter pipeline",
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+ "avatar": "https://avatars.githubusercontent.com/u/40608305?v=4",
+ "description": "A Python built Convolutional Neural Network to classify simulated images as containing a gravitational lens or not.",
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+ "uid": "github/DaymudeLab/assembly-theory",
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+ "description": "A Python Toolkit for Urban Resilience and Disaster Risk Management Analytics using High Frequency Human Mobility Data",
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+ "description": "CME Arrival Time Prediction Using Machine learning Algorithms",
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- "description": "TrackerControl: monitor and control trackers and ads.",
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+ "avatar": "https://avatars.githubusercontent.com/u/64987711?v=4",
+ "description": "Python tools for working with LAMMPS files",
"topics": [
- "android",
- "tracking-protection",
- "privacy"
+ "python",
+ "lammps",
+ "molecular-dynamics"
]
},
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+ "url": "https://github.com/dmilakovic/QSOSIM10",
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+ "avatar": "https://avatars.githubusercontent.com/u/8346157?v=4",
+ "description": "Fortran code to generate artificial QSO spectra",
"topics": []
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- "description": "Linked Data Visualizations Across Multiple Files",
+ "uid": "github/Rohit-Kundu/ET-NET_Covid-Detection",
+ "url": "https://github.com/Rohit-Kundu/ET-NET_Covid-Detection",
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+ "avatar": "https://avatars.githubusercontent.com/u/80497999?v=4",
+ "description": "An Ensemble Transfer Learning Network for COVID-19 detection from lung CT-scan images.",
"topics": [
- "python",
- "visualization",
- "data-science",
- "linked-data"
+ "deep-learning",
+ "ensemble-learning",
+ "covid-19",
+ "ct-scan-images"
]
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- "description": "The Eigentools package for Dedalus",
+ "uid": "github/cheerfuluser/tessreduce",
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+ "avatar": "https://avatars.githubusercontent.com/u/25831737?v=4",
+ "description": "Transient focused reduction for TESS data",
"topics": []
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- "description": "A set of metabolomics tools for use in Galaxy",
+ "uid": "github/henrikmelin/h3ppy",
+ "url": "https://github.com/henrikmelin/h3ppy",
+ "rel": "/software/repository/github/henrikmelin/h3ppy",
+ "avatar": "https://avatars.githubusercontent.com/u/345794?v=4",
+ "description": "A python package for modelling and fitting H3+ spectra",
"topics": [
- "metabolomics",
- "galaxy",
- "secim",
- "lasso",
- "anova",
- "random-forest",
- "pca-analysis"
+ "astronomy",
+ "data-analysis",
+ "planetary-science",
+ "python3",
+ "spectroscopy"
]
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- "description": "Mesa is an open-source Python library for agent-based modeling, ideal for simulating complex systems and exploring emergent behaviors.",
+ "uid": "github/Kambrian/HBTplus",
+ "url": "https://github.com/Kambrian/HBTplus",
+ "rel": "/software/repository/github/Kambrian/HBTplus",
+ "avatar": "https://avatars.githubusercontent.com/u/7944948?v=4",
+ "description": "HBT+ subhalo finder and merger tree builder, the tool to get you out of mess and back to physics.",
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- "mesa",
- "agent-based-modeling",
- "agent-based-simulation",
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- "simulation",
- "simulation-environment",
- "complex-systems",
- "complexity-analysis",
- "modeling-agents",
- "spatial-models",
- "gis"
+ "halofinder",
+ "cosmology",
+ "merger-tree",
+ "subhalo",
+ "hbt",
+ "dark-matter",
+ "astrophysics",
+ "simulation"
]
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- "description": "Image Viewer for BART",
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+ "url": "https://github.com/guaix-ucm/numina",
+ "rel": "/software/repository/github/guaix-ucm/numina",
+ "avatar": "https://avatars.githubusercontent.com/u/10961186?v=4",
+ "description": "Astronomical data reduction package",
"topics": [
- "image-viewer",
- "bart-toolbox"
+ "python",
+ "astronomy",
+ "science"
]
},
{
- "uid": "github/mrirecon/bart",
- "url": "https://github.com/mrirecon/bart",
- "rel": "/software/repository/github/mrirecon/bart",
- "avatar": "https://avatars.githubusercontent.com/u/15148060?v=4",
- "description": "BART: Toolbox for Computational Magnetic Resonance Imaging",
+ "uid": "github/guaix-ucm/megaradrp",
+ "url": "https://github.com/guaix-ucm/megaradrp",
+ "rel": "/software/repository/github/guaix-ucm/megaradrp",
+ "avatar": "https://avatars.githubusercontent.com/u/10961186?v=4",
+ "description": "MEGARA (Multi-Espectr\u00f3grafo en GTC de Alta Resoluci\u00f3n para Astronom\u00eda) is a facility instrument designed for the 10.4m GTC telescope in La Palma (Spain). ",
"topics": [
- "computational-imaging",
- "mri",
- "iterative-methods",
- "compressed-sensing",
- "bart-toolbox",
- "deep-learning"
+ "astronomy",
+ "astrophysics"
]
},
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- "avatar": "https://avatars.githubusercontent.com/u/47825814?v=4",
- "description": "SOXS: Simulated Observations of X-ray Sources",
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+ "url": "https://github.com/Tomoaki-Ishiyama/mpi-rockstar",
+ "rel": "/software/repository/github/Tomoaki-Ishiyama/mpi-rockstar",
+ "avatar": "https://avatars.githubusercontent.com/u/50941374?v=4",
+ "description": "MPI-Rockstar: a Hybrid MPI and OpenMP Parallel Implementation of the Rockstar Halo finder",
"topics": []
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- "description": "Quantitative Magnetic Resonance Imaging Made Easy with qMRLab: a Software for Data Simulation, Analysis and Visualization",
+ "uid": "github/gnuradio/gnuradio",
+ "url": "https://github.com/gnuradio/gnuradio",
+ "rel": "/software/repository/github/gnuradio/gnuradio",
+ "avatar": "https://avatars.githubusercontent.com/u/1278659?v=4",
+ "description": "GNU Radio \u2013 the Free and Open Software Radio Ecosystem",
"topics": [
- "mri",
- "analysis",
- "data-simulation",
- "quantitative",
- "magnetization",
- "relaxometry",
- "mapping"
+ "sdr",
+ "dsp",
+ "wireless",
+ "cybersecurity",
+ "c-plus-plus",
+ "python",
+ "gnu",
+ "radio",
+ "gnuradio",
+ "hacktoberfest"
]
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- "description": "Tools for common BAM file manipulations",
+ "uid": "github/skovaka/UNCALLED",
+ "url": "https://github.com/skovaka/UNCALLED",
+ "rel": "/software/repository/github/skovaka/UNCALLED",
+ "avatar": "https://avatars.githubusercontent.com/u/1577544?v=4",
+ "description": "Raw nanopore signal mapper that enables real-time targeted sequencing",
"topics": []
},
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- "description": "A flexible framework for rapid genome analysis and interpretation",
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+ "url": "https://github.com/stefanoMP/massiveGST",
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+ "avatar": "https://avatars.githubusercontent.com/u/18364052?v=4",
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- "description": "Sex Differences in Cancer",
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+ "url": "https://github.com/BioGenies/AMPBenchmark",
+ "rel": "/software/repository/github/BioGenies/AMPBenchmark",
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- "description": "Libscientific is a C framework for multivariate and other statistical analysis",
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+ "url": "https://github.com/logan-pearce/lofti_gaia",
+ "rel": "/software/repository/github/logan-pearce/lofti_gaia",
+ "avatar": "https://avatars.githubusercontent.com/u/27641243?v=4",
+ "description": "Python package for orbit fitting with Gaia astrometry",
"topics": []
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- "description": "A pythonic interface for radio astronomy interferometry data (uvfits, miriad, others)",
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+ "url": "https://github.com/kumeS/chatAI4R",
+ "rel": "/software/repository/github/kumeS/chatAI4R",
+ "avatar": "https://avatars.githubusercontent.com/u/10130812?v=4",
+ "description": "chatAI4R: Chat-Based Interactive Artificial Intelligence for R",
+ "topics": [
+ "ai",
+ "bioinformatics",
+ "chatgpt",
+ "gpt",
+ "r",
+ "image",
+ "image-generation"
+ ]
+ },
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+ "url": "https://github.com/OnroerendErfgoed/atramhasis",
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+ "avatar": "https://avatars.githubusercontent.com/u/1157802?v=4",
+ "description": "An online SKOS editor",
"topics": [
+ "skos",
"python",
- "astronomy",
- "radio-astronomy",
- "interferometry"
+ "thesaurus",
+ "vocabulary",
+ "pypi-package"
]
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- "description": "Python objects and interfaces for representing diffuse, extended and compact astrophysical radio sources",
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+ "url": "https://github.com/yxlinaqua/BaSIL",
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+ "topics": []
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+ "description": "Allostery pocket prediction",
+ "topics": []
+ },
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- "description": "BOWIE - Binary Observability With Illustrative Exploration",
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+ "description": "Data reduction pipeline for e-MERLIN",
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+ "url": "https://github.com/xinglunju/pyAmor",
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+ "avatar": "https://avatars.githubusercontent.com/u/3944252?v=4",
+ "description": "python code to derive temperatures using Ammonia spectral lines",
"topics": []
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- "description": "The Tiberius pipeline to extract time-series spectra and fit exoplanet transit light curves.",
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+ "url": "https://github.com/espnet/espnet",
+ "rel": "/software/repository/github/espnet/espnet",
+ "avatar": "https://avatars.githubusercontent.com/u/34493687?v=4",
+ "description": "End-to-End Speech Processing Toolkit",
+ "topics": [
+ "deep-learning",
+ "end-to-end",
+ "chainer",
+ "pytorch",
+ "kaldi",
+ "speech-recognition",
+ "speech-synthesis",
+ "speech-translation",
+ "machine-translation",
+ "voice-conversion",
+ "speech-enhancement",
+ "speech-separation",
+ "singing-voice-synthesis",
+ "speaker-diarization",
+ "spoken-language-understanding"
+ ]
+ },
+ {
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+ "avatar": "https://avatars.githubusercontent.com/u/43500212?v=4",
+ "description": "Neutrino fog and floor for direct dark matter searches",
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- "description": "Transparent and privacy-friendly synthetic data generation",
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+ "url": "https://github.com/KennethEnevoldsen/augmenty",
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+ "avatar": "https://avatars.githubusercontent.com/u/23721977?v=4",
+ "description": "Augmenty is an augmentation library based on spaCy for augmenting texts.",
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+ "augmentation",
+ "spacy-extension",
+ "spacy",
+ "nlp",
+ "nlproc",
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+ "python",
+ "text-classification",
+ "training-data",
+ "text-augmentation",
+ "spacy-nlp"
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+ "microfluidics-chip-enrichment",
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+ "python",
+ "scientific-visualization",
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- "exoplanets",
- "radial-velocity",
- "bayesian",
- "gaussian-processes",
- "hacktoberfest"
+ "genome-assembler",
+ "illumina-sequencing",
+ "pipelines"
]
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+ "description": ":chart_with_upwards_trend: Automatically optimise three of Velvet's assembly parameters.",
+ "topics": []
+ },
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+ "avatar": "https://avatars.githubusercontent.com/u/453972?v=4",
+ "description": ":zap: :aquarius: Rapid prokaryotic genome annotation",
"topics": [
- "automated-pipeline",
- "workflow-synthesis",
- "program-synthesis",
- "java"
+ "genome-annotation",
+ "functional-assignment",
+ "bacterial-genomes",
+ "gene-finding"
]
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+ "avatar": "https://avatars.githubusercontent.com/u/453972?v=4",
+ "description": ":scissors: :zap: Rapid haploid variant calling and core genome alignment",
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- "nifti",
- "mri",
- "mri-images",
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- "nii",
- "gz",
- "nitrc",
- "dcm2niix",
- "mricrogl",
- "bids-format",
- "nifti-format"
+ "variant-calling",
+ "haploid",
+ "bacteria",
+ "fastq-analysis",
+ "snps",
+ "vcf",
+ "indel-discovery"
]
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- "proteomics-data-analysis",
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+ "topics": []
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+ "avatar": "https://avatars.githubusercontent.com/u/453972?v=4",
+ "description": ":microscope: :leo: Bacterial ribosomal RNA predictor",
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- "operations-research",
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- "simulation"
+ "rna",
+ "hmmer",
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+ "hmm-model",
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+ "ribosomal"
]
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- "description": "A cosmological tool for emulation of various basic statistics of dark matter haloes based on Dark Quest project (https://darkquestcosmology.github.io/).",
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+ "description": ":mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes",
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- "emulators",
- "cosmology"
+ "antimicrobial-resistance-genes",
+ "virulence-genes",
+ "contigs",
+ "bioinformatics-tool",
+ "genomic-regions"
]
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- "python",
- "climate",
- "climate-analysis",
- "prediction",
- "xarray",
- "dask",
- "pangeo"
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+ "description": "An(other) implementation of JSON Schema for Python",
+ "topics": []
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- "description": "database of neuroml models",
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+ "description": "Python Framework for Multivariate Covariance Generalized Linear Models ",
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+ "statistical-models",
+ "data-science",
+ "python"
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+ },
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- "description": "A Python library for structural cheminformatics",
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+ "description": "JSON output from a shell",
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- "cosmology",
- "merger-tree",
- "subhalo",
- "hbt",
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- "astrophysics",
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+ "porous-media",
+ "topology"
]
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- "nuclear-fusion",
- "simulation",
- "yamamura",
- "bohdansky",
- "nuclear-stopping",
- "electronic-stopping"
+ "3d-data-processing",
+ "cardiac",
+ "orientation",
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+ "structure-tensor",
+ "cardiac-imaging"
]
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+ "topics": [
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+ "machine-learning"
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+ "description": "Binning Virus Genomes from Metagenomes",
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+ "description": "PowNet: Network-constrained Unit Commitment / Economic Dispatch model in Python",
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+ "unit-commitment",
+ "economic-dispatch",
+ "transmission",
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+ "water-energy-nexus",
+ "python",
+ "dispatchable-units",
+ "renewable-resources",
+ "electricity-supply",
+ "substations"
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+ "biodiversity",
+ "marine",
+ "marine-biology",
+ "r"
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+ "description": "Massively parallel phylogenetic placement of genetic sequences",
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- "exoplanets",
- "coronagraph",
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+ "phylogenetics",
+ "bioinformatics",
+ "taxonomic-classification",
+ "mpi",
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+ "description": "A Python wrapper for ELSEPA",
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+ "fractional-differencing",
+ "har-model",
+ "long-memory",
+ "long-range-dependence",
+ "time-series",
+ "time-series-analysis",
+ "cross-sectional-aggregation",
+ "stochastic-duration-shock",
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+ "forecasting"
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+ "description": ":link: Methods for Correlation Analysis",
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+ "bayesian",
+ "partial-correlations",
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- "photometry",
- "kepler",
- "k2-light-curves",
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- "exoplanet-transits"
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+ "performance",
+ "models",
+ "loo",
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+ "conversion",
+ "interpretation",
+ "cohens-d",
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+ "compute",
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"topics": [
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- "exoplanet-transits",
- "light-curves",
- "binary-stars",
- "exomoons"
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+ "marginal",
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+ "marginal-effects",
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+ "description": ":bar_chart: Computation and processing of models' parameters",
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+ "ci",
+ "confidence-intervals",
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+ "dark-matter",
+ "interstellar-medium",
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+ "neutrino-astronomy"
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+ "gamma-ray-astronomy",
+ "neutrino-astronomy",
+ "synchrotron",
+ "cosmic-rays",
+ "galactic-radiative-processes",
+ "healpix"
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+ "description": "A collection of tools designed for the automatic construction, and subsequent analysis, of chemical compounds.",
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+ "quantum-mechanics",
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+ "chemistry",
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- "simulation",
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+ "quantum-chemistry",
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+ "scientific-computing",
+ "web-service",
+ "python",
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+ "workflow-automation"
]
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+ "description": "Artificial intelligence (AI, ML, DL) performance metrics implemented in Python",
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+ "rmse",
+ "mae",
+ "performance-metrics",
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+ "regression",
+ "classification"
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+ "astrophysics",
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+ "radiative-transfer"
]
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+ "description": "Atomic Database for Astronomy",
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"python",
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+ "atomic-database"
]
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+ "topics": []
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+ "outdated",
+ "eth-zurich",
+ "markov-chains"
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+ "topics": []
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- "federated",
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+ "iterative-methods",
+ "iterative-refinement",
+ "linear-solvers",
+ "multiprecision"
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+ "description": "CancerSim: A python3 package for stochastic cancer simulation in 2D.",
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+ "stochastic",
+ "tumours",
+ "mutation-profiles",
+ "division",
+ "simulation",
+ "sampling"
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+ "description": "Python library for fuzzy comparison of mass spectrum data and other Python objects",
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+ "description": "Genomewide Epistasis Analysis on Bacteria",
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+ "microbial-genomics"
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+ "avatar": "https://avatars0.githubusercontent.com/u/48952865?v=4",
+ "description": "Command line tool to analyze a GitHub or GitLab repository's compliance with the fair-software.eu recommendations",
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+ "avatar": "https://avatars.githubusercontent.com/u/57440945?v=4",
+ "description": "AgentPy is an open-source framework for the development and analysis of agent-based models in Python.",
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+ "agent-based-simulation",
+ "abm",
+ "agentpy",
"python",
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- "united-atom",
- "molecular-dynamics-simulation"
+ "networks",
+ "complex-systems",
+ "networkx",
+ "salib"
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- "description": "A python code to forecast the sensitivity of future Pulsar Timing Array (PTA) configurations and assess the parameter estimation of Stochastic Gravitational Wave Background (SGWB)",
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+ "avatar": "https://avatars.githubusercontent.com/u/1728180?v=4",
+ "description": "an alternative to Markov chain Monte Carlo",
"topics": []
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- "description": "Dynamic simulation and testing for single-equation ARDL models, available for both R and Stata",
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+ "uid": "github/kuanrongchan/COVID19-severity",
+ "url": "https://github.com/kuanrongchan/COVID19-severity",
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- "description": "Solving Kepler's equation via contour integration, implemented in C++",
+ "uid": "github/aburgasser/kastredux",
+ "url": "https://github.com/aburgasser/kastredux",
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+ "avatar": "https://avatars.githubusercontent.com/u/5667900?v=4",
+ "description": "kastredux package",
"topics": []
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- "avatar": "https://avatars.githubusercontent.com/u/30410089?v=4",
- "description": "Binned polyspectrum estimation on the full sky, optionally polarized and mask-deconvolved",
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+ "rel": "/software/repository/github/atakan/KeplerSolver",
+ "avatar": "https://avatars.githubusercontent.com/u/655507?v=4",
+ "description": "A code for solving Kepler's equation, with arbitrary epoch.",
"topics": []
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- "avatar": "https://avatars.githubusercontent.com/u/30410089?v=4",
- "description": "Estimators and data for window-free analysis of power spectra and bispectra",
+ "uid": "github/stevengiacalone/triceratops",
+ "url": "https://github.com/stevengiacalone/triceratops",
+ "rel": "/software/repository/github/stevengiacalone/triceratops",
+ "avatar": "https://avatars.githubusercontent.com/u/35981550?v=4",
+ "description": "Tool for Rating Interesting Candidate Exoplanets and Reliability Analysis of Transits Originating from Proximate Stars",
"topics": [
- "large-scale-structure",
- "bispectrum",
- "power-spectrum",
- "cosmology",
- "parameter-inference",
- "boss-dr12"
+ "astronomy",
+ "astrophysics",
+ "astrophysical-signals",
+ "exoplanets",
+ "exoplanet-transits",
+ "statistical-analysis"
]
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- "uid": "github/oliverphilcox/encore",
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- "avatar": "https://avatars.githubusercontent.com/u/30410089?v=4",
- "description": "RascalC: A Fast Code for Galaxy Covariance Matrix Estimation",
+ "uid": "github/RainthunderWYL/LoRD",
+ "url": "https://github.com/RainthunderWYL/LoRD",
+ "rel": "/software/repository/github/RainthunderWYL/LoRD",
+ "avatar": "https://avatars.githubusercontent.com/u/30300990?v=4",
+ "description": "Locate Reconnection Distribution",
"topics": []
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- "avatar": "https://avatars.githubusercontent.com/u/30410089?v=4",
- "description": "Computation of the one-loop bispectrum of galaxies in redshift space",
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+ "url": "https://github.com/s-goldman/Dusty-Evolved-Star-Kit",
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+ "avatar": "https://avatars3.githubusercontent.com/u/32876747?v=4",
+ "description": "SED-fitting python package for fitting evolved stars",
"topics": []
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- "description": "HIPSTER: HIgh-k Power SpecTrum and bispectrum EstimatoR",
+ "uid": "github/ArisTr/PyRaTE",
+ "url": "https://github.com/ArisTr/PyRaTE",
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+ "avatar": "https://avatars.githubusercontent.com/u/25152725?v=4",
+ "description": "Python Radiative Transfer Emission Code",
"topics": []
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- "avatar": "https://avatars.githubusercontent.com/u/30410089?v=4",
- "description": "Binned polyspectrum estimation for 3D large-scale structure, optionally mask-deconvolved ",
+ "uid": "github/bezuidenhoutmc/SeeKAT",
+ "url": "https://github.com/BezuidenhoutMC/SeeKAT",
+ "rel": "/software/repository/github/bezuidenhoutmc/SeeKAT",
+ "avatar": "https://avatars.githubusercontent.com/u/22096485?v=4",
+ "description": "A code for localising a single pulse detected in multiple interferometer beams.",
"topics": []
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- "description": "A Hexadecapolar Analysis for Dust Estimation in Simulations (of CMB B-mode thermal dust emission)",
- "topics": []
+ "uid": "github/ViennaRNA/RNAblueprint",
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+ "description": "RNAblueprint library for uniform sampling of RNA sequences given structural and sequence constraints",
+ "topics": [
+ "rnablueprint-library",
+ "riboswitch",
+ "design",
+ "rna-design",
+ "inverse-folding",
+ "rna-structure",
+ "viennarna",
+ "nupack"
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- "avatar": "https://avatars.githubusercontent.com/u/30410089?v=4",
- "description": "A 1% accurate model of the matter power spectrum and cluster counts covariance, accurate to k = 1 h/Mpc.",
+ "uid": "github/geza-kovacs/tran_k2",
+ "url": "https://github.com/geza-kovacs/tran_k2",
+ "rel": "/software/repository/github/geza-kovacs/tran_k2",
+ "avatar": "https://avatars.githubusercontent.com/u/72140288?v=4",
+ "description": "Planetary transit search in the presence of stellar variability and instrumental systematics",
"topics": []
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- "description": "pipeline for the analysis of small RNA data",
+ "uid": "github/inrae/RCaNmodel",
+ "url": "https://github.com/inrae/RCaNmodel",
+ "rel": "/software/repository/github/inrae/RCaNmodel",
+ "avatar": "https://avatars.githubusercontent.com/u/64418390?v=4",
+ "description": "repository for RCaN and RCaNconstructor",
"topics": []
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- "avatar": "https://avatars.githubusercontent.com/u/1621788?v=4",
- "description": "small RNA analysis from NGS data",
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+ "rel": "/software/repository/github/rudolffu/pyfosc",
+ "avatar": "https://avatars.githubusercontent.com/u/23732534?v=4",
+ "description": "PyFOSC is a pipeline toolbox for spectroscopic data reduction written in Python. It can be used for FOSC data from Xinglong/Lijiang 2-meter telescopes.",
"topics": [
- "smallrna",
- "mirna",
- "trna",
- "report",
- "sequencing"
+ "iraf",
+ "pyraf",
+ "astroconda",
+ "spectroscopy",
+ "pipeline-toolbox"
]
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- "description": "experiment orchestration and data acquisition",
+ "uid": "github/MouseLand/cellpose",
+ "url": "https://github.com/MouseLand/cellpose",
+ "rel": "/software/repository/github/MouseLand/cellpose",
+ "avatar": "https://avatars.githubusercontent.com/u/28845184?v=4",
+ "description": "a generalist algorithm for cellular segmentation with human-in-the-loop capabilities",
"topics": [
- "python",
- "bluesky",
- "dataacquisition"
+ "segmentation",
+ "cell-segmentation",
+ "cell-biology"
]
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- "avatar": "https://avatars2.githubusercontent.com/u/8256626?v=4",
- "description": "Domain based annotation of transposable elements ",
+ "uid": "github/DanielChou0916/felino",
+ "url": "https://github.com/DanielChou0916/felino",
+ "rel": "/software/repository/github/DanielChou0916/felino",
+ "avatar": "https://avatars.githubusercontent.com/u/142940612?v=4",
+ "description": "MOOSE-based phase-field fracture application for fatigue analysis and geomaterials with tension\u2013compression asymmetry and reproducible benchmarks.",
"topics": []
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+ "avatar": "https://avatars.githubusercontent.com/u/187758865?v=4",
+ "description": "An improved implementation of SPDust for modeling spinning dust radiation",
"topics": []
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- "description": "Tool for demultiplexing Nanopore barcode sequence data",
- "topics": [
- "bioinformatics",
- "genomics",
- "nanopore",
- "barcode"
- ]
+ "uid": "github/mdovale/DeepFMKit",
+ "url": "https://github.com/mdovale/DeepFMKit",
+ "rel": "/software/repository/github/mdovale/DeepFMKit",
+ "avatar": "https://avatars.githubusercontent.com/u/21078439?v=4",
+ "description": "A Python toolbox for simulating and analyzing Deep Frequency Modulation Interferometers",
+ "topics": []
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- "description": "Automated identification of supernovae with multi-modal deep learning",
+ "uid": "github/rhenanbartels/hrv",
+ "url": "https://github.com/rhenanbartels/hrv",
+ "rel": "/software/repository/github/rhenanbartels/hrv",
+ "avatar": "https://avatars3.githubusercontent.com/u/2186646?v=4",
+ "description": "A Python package for heart rate variability analysis",
+ "topics": []
+ },
+ {
+ "uid": "github/ACEnglish/truvari",
+ "url": "https://github.com/ACEnglish/truvari",
+ "rel": "/software/repository/github/ACEnglish/truvari",
+ "avatar": "https://avatars.githubusercontent.com/u/2422579?v=4",
+ "description": "Structural variant toolkit for VCFs",
"topics": [
- "astronomy",
- "astrophysics",
- "computer-vision",
- "time-domain-astronomy",
- "transient-astronomy",
- "ztf"
+ "structural-variation",
+ "vcf",
+ "bioinformatics",
+ "data-science",
+ "genomics",
+ "vcf-comparison",
+ "annotation-tool",
+ "benchmark-scripts",
+ "sequencing-data",
+ "sv-merging"
]
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- "description": "A spherical Jeans modeling tool to compute a system's cumulative mass distribution from (observationally biased) 6D phase space coordinates",
+ "uid": "github/XSLiuLab/Seq2Neo",
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+ "description": "Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction",
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- "description": "Play atmospheric modelling like it's LEGO.",
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+ "avatar": "https://avatars.githubusercontent.com/u/16474917?v=4",
+ "description": "Python package for the analysis of tn-seq data",
"topics": []
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- "description": "User-Friendly R Package for Supervised Machine Learning Pipelines",
+ "uid": "github/cschreib/egg",
+ "url": "https://github.com/cschreib/egg",
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+ "avatar": "https://avatars.githubusercontent.com/u/2236577?v=4",
+ "description": "Tool to generate fake galaxy catalogs with realistic positions, morphologies and fluxes from the far-ultraviolet to the far-infrared.",
"topics": [
- "machine-learning",
- "r-package",
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+ "tool",
+ "astronomy",
+ "astrophysics",
+ "catalog",
+ "mock"
]
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+ "avatar": "https://avatars.githubusercontent.com/u/10528646?v=4",
+ "description": "Digital spoligotyping of MTB strains from Illumina read data",
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- "description": "KI-ENNA: (E)in (N)euronales (N)etz zum (A)usprobieren / AI-ANNE: (A) (N)eural (N)et for (E)xploration",
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+ "rel": "/software/repository/github/toshiyan/cmblensplus",
+ "avatar": "https://avatars.githubusercontent.com/u/16786258?v=4",
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},
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- "topics": [
- "co-expression",
- "comparative-genomics",
- "conservation",
- "gene-expression"
- ]
+ "uid": "github/mikesmitka/truvot",
+ "url": "https://github.com/mikesmitka/truvot",
+ "rel": "/software/repository/github/mikesmitka/truvot",
+ "avatar": "https://avatars.githubusercontent.com/u/13972392?v=4",
+ "description": null,
+ "topics": []
},
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- "description": "MAPS (Model-based Analysis of PLAC-Seq data) pipeline is a a set of multiple scripts used to analyze PLAC-Seq and HiChIP data.",
+ "uid": "github/Onogi/VIGoR",
+ "url": "https://github.com/Onogi/VIGoR",
+ "rel": "/software/repository/github/Onogi/VIGoR",
+ "avatar": "https://avatars.githubusercontent.com/u/11764076?v=4",
+ "description": "Variational Bayesian Inference for Genome-Wide Regression",
"topics": []
},
{
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- "description": "shapelets is a python package that implements several shapelet functions and some of their significant applications in science and astronomy.",
+ "uid": "github/scottleedavis/googleearthtoolbox",
+ "url": "https://github.com/scottleedavis/google-earth-toolbox",
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+ "avatar": "https://avatars0.githubusercontent.com/u/2914443?v=4",
+ "description": "Leverages the intuitive interactive virtual globe interface provided by Google Earth, providing programatic tools useful in spatio-temporal analysis.",
"topics": []
},
{
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+ "uid": "github/RosettaCommons/RFDesign",
+ "url": "https://github.com/RosettaCommons/RFDesign",
+ "rel": "/software/repository/github/RosettaCommons/RFDesign",
+ "avatar": "https://avatars.githubusercontent.com/u/3856847?v=4",
+ "description": "Protein hallucination and inpainting with RoseTTAFold",
"topics": []
},
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- "description": "OpenCMP is a computational multiphysics software package based on the finite element method. It is primarily intended for physicochemical processes involving significant convective flow.",
+ "uid": "github/RosettaCommons/RoseTTAFold",
+ "url": "https://github.com/RosettaCommons/RoseTTAFold",
+ "rel": "/software/repository/github/RosettaCommons/RoseTTAFold",
+ "avatar": "https://avatars.githubusercontent.com/u/3856847?v=4",
+ "description": "This package contains deep learning models and related scripts for RoseTTAFold",
+ "topics": []
+ },
+ {
+ "uid": "github/fjankowsk/scatfit",
+ "url": "https://github.com/fjankowsk/scatfit",
+ "rel": "/software/repository/github/fjankowsk/scatfit",
+ "avatar": "https://avatars.githubusercontent.com/u/10989149?v=4",
+ "description": "Scattering fits of Fast Radio Burst and pulsar data.",
"topics": [
- "finite-element-methods",
- "computational-fluid-dynamics",
- "simulation",
- "modeling"
+ "astronomy",
+ "astrophysics",
+ "fastradiobursts",
+ "pulsars",
+ "ionised-media",
+ "radio-astronomy"
]
},
{
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- "description": "Functional models and algorithms for sparse signal processing",
+ "uid": "github/fjankowsk/fitpdf",
+ "url": "https://github.com/fjankowsk/fitpdf",
+ "rel": "/software/repository/github/fjankowsk/fitpdf",
+ "avatar": "https://avatars.githubusercontent.com/u/10989149?v=4",
+ "description": "Bayesian distribution fitting for pulsar and FRB data.",
"topics": [
- "sparse-representations",
- "jax",
- "wavelets",
- "convex-optimization",
- "linear-operators",
- "compressive-sensing",
- "functional-programming",
- "xla",
- "l1-regularization",
- "sparse-linear-systems"
+ "astrophysics",
+ "data-analysis",
+ "distributions",
+ "fast-radio-bursts",
+ "fitting",
+ "fitting-distributions",
+ "pulsars",
+ "python"
]
},
{
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- "avatar": "https://avatars.githubusercontent.com/u/1820852?v=4",
- "description": "Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly",
+ "uid": "github/HuttleyLab/scitrack",
+ "url": "https://github.com/HuttleyLab/scitrack",
+ "rel": "/software/repository/github/HuttleyLab/scitrack",
+ "avatar": "https://avatars.githubusercontent.com/u/54967899?v=4",
+ "description": "library aimed at scientists who want a simple tool to help log research computations",
"topics": [
- "graph",
- "dna",
- "alignment",
- "metagenomics",
- "search",
- "assembly"
+ "logging-library",
+ "reproducible-research",
+ "science"
]
},
{
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- "avatar": "https://avatars.githubusercontent.com/u/6616486?v=4",
- "description": "Package for modeling X-ray surface brightness profiles.",
- "topics": []
+ "uid": "github/HuttleyLab/DiverseSeq",
+ "url": "https://github.com/HuttleyLab/DiverseSeq",
+ "rel": "/software/repository/github/HuttleyLab/DiverseSeq",
+ "avatar": "https://avatars.githubusercontent.com/u/54967899?v=4",
+ "description": "Tools for analysis of sequence divergence",
+ "topics": [
+ "bioinformatics",
+ "phylogenetics"
+ ]
},
{
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- "url": "https://github.com/tariqdaouda/CAMAP",
- "rel": "/software/repository/github/tariqdaouda/CAMAP",
- "avatar": "https://avatars.githubusercontent.com/u/7224902?v=4",
- "description": "Codon Arrangement MAP Predictor, predicting MHC-I Associated Peptides presentation form mRNA",
+ "uid": "github/HITS-AIN/GPCC.jl",
+ "url": "https://github.com/HITS-AIN/GPCC.jl",
+ "rel": "/software/repository/github/HITS-AIN/GPCC.jl",
+ "avatar": "https://avatars.githubusercontent.com/u/40384418?v=4",
+ "description": "Gaussian process cross correlation",
"topics": []
},
{
- "uid": "github/GilbertLabUCSF/CanDI",
- "url": "https://github.com/GilbertLabUCSF/CanDI",
- "rel": "/software/repository/github/GilbertLabUCSF/CanDI",
- "avatar": "https://avatars.githubusercontent.com/u/81225660?v=4",
- "description": "CanDI - A global cancer data integrator",
+ "uid": "github/HITS-AIN/PINK",
+ "url": "https://github.com/HITS-AIN/PINK",
+ "rel": "/software/repository/github/HITS-AIN/PINK",
+ "avatar": "https://avatars.githubusercontent.com/u/40384418?v=4",
+ "description": "Parallelized rotation and flipping INvariant Kohonen maps",
"topics": [
- "cancer-research",
- "database",
- "depmap"
+ "kohonen-map",
+ "machine-learning",
+ "astronomical-algorithms",
+ "som",
+ "som-training",
+ "self-organizing-map"
]
},
{
@@ -41140,4327 +42056,4336 @@
"topics": []
},
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- "description": "goFlux: A user-friendly way to calculate GHG fluxes yourself, regardless of user experience",
- "topics": []
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- "description": " C++ library and cmdline tools for parsing and manipulating VCF files",
- "topics": [
- "variant-calling",
- "genomics",
- "vcf-manipulation",
- "genotyping",
- "haplotypecaller"
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- },
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- "avatar": "https://avatars.githubusercontent.com/u/16582802?v=4",
- "description": "Smart VCF parser DSL",
+ "uid": "github/beastraban/INSANE",
+ "url": "https://github.com/beastraban/INSANE",
+ "rel": "/software/repository/github/beastraban/INSANE",
+ "avatar": "https://avatars.githubusercontent.com/u/33986427?v=4",
+ "description": "INflationary potential Simulator and ANalysis Engine",
"topics": []
},
{
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- "url": "https://github.com/dieghernan/tidyterra",
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- "avatar": "https://avatars.githubusercontent.com/u/25656809?v=4",
- "description": "tidyverse and ggplot2 methods for terra spatial objects",
- "topics": [
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- "r-package",
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- "rspatial",
- "rstats",
- "rstats-package",
- "terra",
- "cran",
- "cran-r",
- "r"
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- "avatar": "https://avatars.githubusercontent.com/u/65019699?v=4",
- "description": "3D Slicer extension for liver analysis and therapy planning",
+ "uid": "github/multiwavelength/gleam",
+ "url": "https://github.com/multiwavelength/gleam",
+ "rel": "/software/repository/github/multiwavelength/gleam",
+ "avatar": "https://avatars.githubusercontent.com/u/59348944?v=4",
+ "description": "Galaxy Line Emission & Absorption Modeling",
"topics": [
- "liver",
- "visualization",
- "analysis",
- "3d-slicer-extension",
- "surgical-planning"
+ "astronomy",
+ "astronomy-library",
+ "spectroscopy",
+ "galaxies",
+ "agn",
+ "extragalactic",
+ "spectral-lines",
+ "emission-lines",
+ "absorption-lines",
+ "astronomy-software",
+ "1d-spectra"
]
},
{
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- "avatar": "https://avatars.githubusercontent.com/u/9889312?v=4",
- "description": "A general-purpose forward-time population genetics simulation environment.",
+ "uid": "github/multiwavelength/redshifts",
+ "url": "https://github.com/multiwavelength/redshifts",
+ "rel": "/software/repository/github/multiwavelength/redshifts",
+ "avatar": "https://avatars.githubusercontent.com/u/59348944?v=4",
+ "description": "Search the VizieR and NED databases for spectroscopic redshifts around positions of interest.",
"topics": []
},
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- "url": "https://github.com/dtanoglidis/DeepShadows",
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- "avatar": "https://avatars.githubusercontent.com/u/26015096?v=4",
- "description": "Repository for the project \"DeepShadows: Separating LSBGs from artifacts using Deep Learning\"",
+ "uid": "github/NPLinker/nplinker",
+ "url": "https://github.com/NPLinker/nplinker",
+ "rel": "/software/repository/github/NPLinker/nplinker",
+ "avatar": "https://avatars.githubusercontent.com/u/104773527?v=4",
+ "description": "A python framework for microbial natural products data mining by integrating genomics and metabolomics data",
"topics": [
- "deep-learning",
- "galaxies"
+ "data-harmonization",
+ "data-integration",
+ "genomics",
+ "metabolomics",
+ "multi-omics-integration"
]
},
{
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+ "uid": "github/jfmrod/MAPseq",
+ "url": "https://github.com/jfmrod/MAPseq",
+ "rel": "/software/repository/github/jfmrod/MAPseq",
+ "avatar": "https://avatars.githubusercontent.com/u/5286814?v=4",
+ "description": "highthroughput rRNA sequence classification and OTU mapping for metagenomic samples",
"topics": []
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- "url": "https://github.com/raphael-group/chisel",
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- "avatar": "https://avatars.githubusercontent.com/u/5168500?v=4",
- "description": "CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links",
+ "uid": "github/teoxxx/nemiss_proper",
+ "url": "https://github.com/teoxxx/nemiss_proper",
+ "rel": "/software/repository/github/teoxxx/nemiss_proper",
+ "avatar": "https://avatars.githubusercontent.com/u/40962945?v=4",
+ "description": "nemiss code repo 2023",
"topics": []
},
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- "topics": [
- "python",
- "webservice",
- "hydrology",
- "climate",
- "data"
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+ "uid": "github/teoxxx/nemiss_pbl",
+ "url": "https://github.com/teoxxx/nemiss_pbl",
+ "rel": "/software/repository/github/teoxxx/nemiss_pbl",
+ "avatar": "https://avatars.githubusercontent.com/u/40962945?v=4",
+ "description": "nemiss neutrino emission from hydrocode data describing a simulated stellar binary system",
+ "topics": []
},
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- "avatar": "https://avatars.githubusercontent.com/u/399263?v=4",
- "description": "Filter for improving compression of typed binary data.",
+ "uid": "github/teoxxx/rlos",
+ "url": "https://github.com/teoxxx/rlos",
+ "rel": "/software/repository/github/teoxxx/rlos",
+ "avatar": "https://avatars.githubusercontent.com/u/40962945?v=4",
+ "description": "RLOS Relativistic Line of Sight, time-resolved imaging of model astrophysical jets",
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- "nonparametric-regression",
- "cross-validation",
- "lasso-regression"
- ]
+ "uid": "github/MetaCell/scicrunch-antibody-registry",
+ "url": "https://github.com/MetaCell/scicrunch-antibody-registry",
+ "rel": "/software/repository/github/MetaCell/scicrunch-antibody-registry",
+ "avatar": "https://avatars.githubusercontent.com/u/10982870?v=4",
+ "description": "A repo for the SciCrunch antibody registry portal ",
+ "topics": []
},
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- "avatar": "https://avatars.githubusercontent.com/u/55973825?v=4",
- "description": "Python implementation of gene set proximity analysis",
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+ "rel": "/software/repository/github/OSUDSL/pydre",
+ "avatar": "https://avatars.githubusercontent.com/u/71854689?v=4",
+ "description": "Driving simulation Data Reduction Engine ",
"topics": []
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- "avatar": "https://avatars.githubusercontent.com/u/17026809?v=4",
- "description": "Code for evaluating the tidal stripping of dark matter (sub)haloes in the adiabatic limit",
+ "uid": "github/gmzsebastian/FLEET",
+ "url": "https://github.com/gmzsebastian/FLEET",
+ "rel": "/software/repository/github/gmzsebastian/FLEET",
+ "avatar": "https://avatars.githubusercontent.com/u/10391602?v=4",
+ "description": "Finding Luminous and Exotic Extragalactic Transients",
"topics": []
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- "description": "A MATLAB codebase to analyze TEM images of soot, which includes new methods associated with this project and a compilation of other pre-existing methods into a single package.",
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+ "url": "https://github.com/pymedphys/pymedphys",
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+ "avatar": "https://avatars.githubusercontent.com/u/47132275?v=4",
+ "description": "A community effort to develop an open standard library for Medical Physics in Python. Building quality transparent software together via peer review and open source distribution. Open code is better science.",
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- "aggregates",
- "transmission-electron-microscopy",
- "particle-size-distribution",
- "tem",
- "tem-images",
- "particle-diameter",
- "aerosols",
- "image-processing"
+ "medical-physics",
+ "dicom",
+ "radiation-oncology",
+ "radiation-therapy",
+ "radiation-physics",
+ "radiotherapy"
]
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- "pure-python",
- "bayesian-inference"
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+ "avatar": "https://avatars.githubusercontent.com/u/16080526?v=4",
+ "description": "Bloom-filter based minimal perfect hash function library",
+ "topics": []
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- "dynamic-nested-sampling"
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+ "avatar": "https://avatars.githubusercontent.com/u/113673811?v=4",
+ "description": "Hybrid Extended Learning Platform (HELP) - VR client for Meta Quest",
+ "topics": []
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+ "avatar": "https://avatars.githubusercontent.com/u/31348883?v=4",
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+ "chromatogram",
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+ "tracy",
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+ "variant-calling",
+ "alignment",
+ "genetic-engineering",
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+ "primer-design",
+ "in-silico",
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+ "mapping",
+ "remote-sensing"
]
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+ "parallel-computing",
+ "electronic-structure-calculations",
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+ "nwchem",
+ "chemistry",
+ "hartree-fock",
+ "quantum-chemistry"
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+ "deep-learning",
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+ "online-deep-learning",
+ "online-learning",
+ "outlier-detection",
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- "photochemical-model",
- "atmosphere",
- "python"
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- "photochemical-model",
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- "atmosphere",
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"python",
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+ "maxwell",
+ "plasmas",
+ "landau-damping",
+ "electrostatic-wakefield",
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+ "finite-volume"
]
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- "spectroscopy",
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+ "cities",
+ "recreation",
+ "parks",
+ "geoinformatics",
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- "astronomy",
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+ "genome-browser",
+ "molecular-biology",
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+ "description": "density-based clustering for exploratory data analysis based on multi-parameter persistence",
"topics": [
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- "pre-processing",
- "post-processing",
- "computational-fluid-dynamics"
+ "cluster-analysis",
+ "clustering",
+ "clustering-algorithm",
+ "machine-learning",
+ "machine-learning-algorithms",
+ "topological-data-analysis",
+ "unsupervised-learning"
]
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- "description": null,
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+ "url": "https://github.com/ucam-department-of-psychiatry/camcops",
+ "rel": "/software/repository/github/RudolfCardinal/camcops",
+ "avatar": "https://avatars.githubusercontent.com/u/47028450?v=4",
+ "description": "Cambridge Cognitive and Psychiatric Test Kit (CamCOPS)",
"topics": []
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- "description": "Code for estimating realistic masses and uncertainties from M_Ks (2MASS Ks + distance)",
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+ "rel": "/software/repository/github/ntcockroft/STarFish",
+ "avatar": "https://avatars0.githubusercontent.com/u/9052387?v=4",
+ "description": "Tool for predicting the protein targets of bioactive small molecules",
"topics": []
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- "description": "An IDL/GDL wrapper to automate TiRiFiC",
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- "gdl",
- "fat"
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+ "uid": "github/tcassanelli/pywpf",
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+ "rel": "/software/repository/github/tcassanelli/pywpf",
+ "avatar": "https://avatars.githubusercontent.com/u/8934433?v=4",
+ "description": "The purpose of this program is to see the effectivity and efficiency that a PCA folding analysis has compared to the Epoch Folding, which is the standard used for pulsar period computations.",
+ "topics": []
},
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- "description": "Python3 version of FAT. Extensive documentation can be found at https://pyfat-astro.readthedocs.io/en/latest/",
+ "uid": "github/fhtouma/subgen2",
+ "url": "https://github.com/fhtouma/subgen2",
+ "rel": "/software/repository/github/fhtouma/subgen2",
+ "avatar": "https://avatars.githubusercontent.com/u/142860589?v=4",
+ "description": null,
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- "description": "Python library for reading SWIFT data. Uses unyt and h5py.",
- "topics": [
- "cosmology",
- "particle",
- "hdf5"
- ]
+ "uid": "github/astroweaver/the_farmer",
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+ "rel": "/software/repository/github/astroweaver/the_farmer",
+ "avatar": "https://avatars.githubusercontent.com/u/39458378?v=4",
+ "description": "The Farmer",
+ "topics": []
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- "description": "Optimal experimental design of ODE and DAE systems in julia",
+ "uid": "github/circuitgraph/circuitgraph",
+ "url": "https://github.com/circuitgraph/circuitgraph",
+ "rel": "/software/repository/github/circuitgraph/circuitgraph",
+ "avatar": "https://avatars1.githubusercontent.com/u/68197630?v=4",
+ "description": "Tools for working with circuits as graphs in python",
"topics": [
- "mixed-integer-programming",
- "optimal-control",
- "optimal-experimental-design",
- "sciml"
+ "python",
+ "boolean-circuits",
+ "satisfiability",
+ "netlist",
+ "graphs",
+ "eda"
]
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- "conversion",
- "cooler",
- "cxx",
- "cxx-library",
- "cxx17",
- "hic",
- "hictk"
- ]
+ "uid": "github/beckermr/calclens",
+ "url": "https://github.com/beckermr/calclens",
+ "rel": "/software/repository/github/beckermr/calclens",
+ "avatar": "https://avatars.githubusercontent.com/u/5296416?v=4",
+ "description": "Curved-sky grAvitational Lensing for Cosmological Light conE simulatioNS",
+ "topics": []
},
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- "url": "https://github.com/paulsengroup/hictkpy",
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- "avatar": "https://avatars.githubusercontent.com/u/100847901?v=4",
- "description": "Python bindings for hictk: read and write .cool and .hic files directly from Python",
+ "uid": "github/lucianolorenti/ceruleo",
+ "url": "https://github.com/lucianolorenti/ceruleo",
+ "rel": "/software/repository/github/lucianolorenti/ceruleo",
+ "avatar": "https://avatars.githubusercontent.com/u/106397?v=4",
+ "description": "CeRULEo: Comprehensive utilitiEs for Remaining Useful Life Estimation methOds",
"topics": [
- "bindings",
- "bioinformatics",
- "cooler",
- "hic",
- "hictk",
- "python3"
+ "predictive-maintenance",
+ "time-series",
+ "remaining-useful-life",
+ "remaining-useful-life-prediction"
]
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- "avatar": "https://avatars.githubusercontent.com/u/100847901?v=4",
- "description": "R bindings for hictk: read .cool and .hic files directly from R",
+ "uid": "github/migueldvb/cine",
+ "url": "https://github.com/migueldvb/cine",
+ "rel": "/software/repository/github/migueldvb/cine",
+ "avatar": "https://avatars.githubusercontent.com/u/678759?v=4",
+ "description": "Calculate infrared pumping rates by solar radiation",
"topics": [
- "bindings",
- "bioinformatics",
- "cooler",
- "hic",
- "hictk",
- "r",
- "hi-c"
+ "python",
+ "astronomy",
+ "science",
+ "comets"
]
},
{
- "uid": "github/paulsengroup/StripePy",
- "url": "https://github.com/paulsengroup/StripePy",
- "rel": "/software/repository/github/paulsengroup/StripePy",
- "avatar": "https://avatars.githubusercontent.com/u/100847901?v=4",
- "description": "StripePy recognizes architectural stripes in 3C and Hi-C contact maps using geometric reasoning",
- "topics": []
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- "description": "Profiles of cosmological likelihoods: Code for extracting the 1D profile likelihood of a parameter using MontePython ",
- "topics": []
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- "avatar": "https://avatars.githubusercontent.com/u/29040266?v=4",
- "description": "cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.",
+ "uid": "github/Martin-Fahrenberger/GTestimate",
+ "url": "https://github.com/Martin-Fahrenberger/GTestimate",
+ "rel": "/software/repository/github/Martin-Fahrenberger/GTestimate",
+ "avatar": "https://avatars.githubusercontent.com/u/20248502?v=4",
+ "description": "scRNA-seq normalization method, based on the Simple Good-Turing estimator",
"topics": [
- "sequencing",
- "cgmlst",
- "wgmlst",
- "mlst",
- "bacterial-genomes",
- "outbreak-data-analysis",
- "outbreak-detection"
+ "good-turing",
+ "scrna-seq"
]
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- "uid": "github/BU-ISCIII/iSkyLIMS",
- "url": "https://github.com/BU-ISCIII/iSkyLIMS",
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- "description": "is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.",
+ "uid": "github/PathoGenOmics-Lab/get_mnv",
+ "url": "https://github.com/PathoGenOmics-Lab/get_MNV",
+ "rel": "/software/repository/github/PathoGenOmics-Lab/get_mnv",
+ "avatar": "https://avatars.githubusercontent.com/u/134300128?v=4",
+ "description": "Identifies multiple SNVs within the same codon, reclassifies them as MNVs, and accurately computes resulting amino acid changes from genomic reads",
"topics": [
- "bioinformatics-analysis",
- "lims",
- "workflow",
- "ngs-analysis",
- "ngs",
- "ngs-data"
+ "mnv",
+ "snv",
+ "annotation",
+ "bam",
+ "rust",
+ "snp",
+ "vcf"
]
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- "rel": "/software/repository/github/BU-ISCIII/plasmidID",
- "avatar": "https://avatars.githubusercontent.com/u/29040266?v=4",
- "description": "PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.",
+ "uid": "github/PathoGenOmics-Lab/pathotypr",
+ "url": "https://github.com/PathoGenOmics-Lab/pathotypr",
+ "rel": "/software/repository/github/PathoGenOmics-Lab/pathotypr",
+ "avatar": "https://avatars.githubusercontent.com/u/134300128?v=4",
+ "description": "Genome classificator using machine learning and SNP markers.",
"topics": [
- "plasmid",
- "ngs",
- "ngs-analysis",
- "microbiology",
- "whole-genome-sequencing"
+ "drug-resistance",
+ "genome",
+ "lineages",
+ "machine-learning",
+ "mycobacterium-tuberculosis",
+ "prediction",
+ "rust",
+ "snps",
+ "kmer"
]
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- "avatar": "https://avatars.githubusercontent.com/u/9143392?v=4",
- "description": "Inverting Solar Flare Observations with Invertible Neural Nets (with RADYN physics) ",
+ "uid": "github/jstuecker/adiabatic-tides",
+ "url": "https://github.com/jstuecker/adiabatic-tides",
+ "rel": "/software/repository/github/jstuecker/adiabatic-tides",
+ "avatar": "https://avatars.githubusercontent.com/u/17026809?v=4",
+ "description": "Code for evaluating the tidal stripping of dark matter (sub)haloes in the adiabatic limit",
"topics": []
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- "url": "https://github.com/ptaconet/bdd_rntaaf",
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- "description": "Codes SQL de la premi\u00e8re base de donn\u00e9es relationelle de la R\u00e9serve Naturelle Nationale des Terres australes fran\u00e7aises",
+ "uid": "github/dondi/GRNsight",
+ "url": "https://github.com/dondi/GRNsight",
+ "rel": "/software/repository/github/dondi/GRNsight",
+ "avatar": "https://avatars.githubusercontent.com/u/382242?v=4",
+ "description": "Web app and service for modeling and visualizing gene regulatory networks.",
"topics": []
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- "url": "https://github.com/ptaconet/modisfast",
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- "vegetation-data"
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- "avatar": "https://avatars.githubusercontent.com/u/98771357?v=4",
- "description": "Medium fidelity aircraft-propulsion system design and optimization. ",
+ "uid": "github/hillerlab/GenomeAlignmentTools",
+ "url": "https://github.com/hillerlab/GenomeAlignmentTools",
+ "rel": "/software/repository/github/hillerlab/GenomeAlignmentTools",
+ "avatar": "https://avatars0.githubusercontent.com/u/8512188?v=4",
+ "description": "Tools for improving the sensitivity and specificity of genome alignments",
"topics": []
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- "url": "https://github.com/dlinssen/sunbather",
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- "avatar": "https://avatars.githubusercontent.com/u/126874901?v=4",
- "description": "Python/Cloudy package for simulating escaping exoplanet atmospheres and their transit spectra.",
+ "uid": "github/alexander-mead/collapse",
+ "url": "https://github.com/alexander-mead/collapse",
+ "rel": "/software/repository/github/alexander-mead/collapse",
+ "avatar": "https://avatars.githubusercontent.com/u/9140961?v=4",
+ "description": "Spherical-collapse model code",
"topics": []
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- "avatar": "https://avatars.githubusercontent.com/u/46714192?v=4",
- "description": "A modular, python-based framework for mass spectrometry. Powered by nbdev.",
+ "uid": "github/alexander-mead/pyhalomodel",
+ "url": "https://github.com/alexander-mead/pyhalomodel",
+ "rel": "/software/repository/github/alexander-mead/pyhalomodel",
+ "avatar": "https://avatars.githubusercontent.com/u/9140961?v=4",
+ "description": "A pure Python halo-model implementation for power spectra of any large-scale structure tracer combination.",
"topics": [
- "mass-spectrometry",
- "bioinformatics",
- "proteomics"
+ "astrophysics",
+ "cosmology",
+ "large-scale-structure"
]
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- "avatar": "https://avatars.githubusercontent.com/u/2264697?v=4",
- "description": "toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files",
+ "uid": "github/alexander-mead/HMcode",
+ "url": "https://github.com/alexander-mead/HMcode",
+ "rel": "/software/repository/github/alexander-mead/HMcode",
+ "avatar": "https://avatars.githubusercontent.com/u/9140961?v=4",
+ "description": "Augmented halo model for accurate non-linear matter power spectrum calculations",
"topics": [
- "dna-sequences",
- "compression",
- "filesystem",
- "fuse-filesystem",
- "fasta",
- "2bit"
+ "astrophysics",
+ "cosmology",
+ "astronomy"
]
},
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- "avatar": "https://avatars.githubusercontent.com/u/12986780?v=4",
- "description": "Guaranteed compression for Unicode short strings",
+ "uid": "github/lnferris/ocean_data_tools",
+ "url": "https://github.com/lnferris/ocean_data_tools",
+ "rel": "/software/repository/github/lnferris/ocean_data_tools",
+ "avatar": "https://avatars1.githubusercontent.com/u/24570061?v=4",
+ "description": "A MATLAB toolbox for interacting with bulk freely-available oceanographic data.",
"topics": [
- "compression",
- "arduino",
- "string-compression-algorithms",
- "string-compression",
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- "iot",
- "short-string",
- "json-compression",
- "xml-compression",
- "cost-optimization",
- "bandwidth-saver",
- "storage-saving",
- "cloud-cost-intelligence"
+ "oceanography",
+ "matlab",
+ "hycom",
+ "argo-floats",
+ "physical-oceanography",
+ "ocean",
+ "ocean-data"
]
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+ "uid": "github/SysBioUAB/hpi_predictor",
+ "url": "https://github.com/SysBioUAB/hpi_predictor",
+ "rel": "/software/repository/github/SysBioUAB/hpi_predictor",
+ "avatar": "https://avatars.githubusercontent.com/u/78474998?v=4",
+ "description": "Bash+R tool to predict host-pathogen protein-protein interactions based on numerical encoding of physicochemical descriptors",
"topics": []
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- "kubernetes"
- ]
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- "avatar": "https://avatars.githubusercontent.com/u/3667078?v=4",
- "description": "Tools for working with SAM/BAM data",
+ "uid": "github/carpyncho/carpyncho-py",
+ "url": "https://github.com/carpyncho/carpyncho-py",
+ "rel": "/software/repository/github/carpyncho/carpyncho-py",
+ "avatar": "https://avatars.githubusercontent.com/u/13108515?v=4",
+ "description": "Carpyncho client for python",
"topics": [
- "sam",
- "bam",
- "bioinformatics"
+ "vvv",
+ "astronomy",
+ "catalog",
+ "lightcurves"
]
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+ "uid": "github/neeravkaushal/RIDs-in-WCDs",
+ "url": "https://github.com/neeravkaushal/RIDs-in-WCDs",
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+ "anisotropy",
+ "directional-statistics",
+ "histogram",
+ "spherical-histograms"
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- "radar-vegetation",
- "polarimetric-decompositions",
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+ "mass-spectrometry",
+ "deep-learning",
+ "spectral-library"
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+ "description": "Generates initial conditions for cosmological N-body simulations, optionally applying Particle Linear Theory corrections.",
"topics": [
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- "gravity-model",
- "uncertainty-quantification"
+ "cosmology",
+ "nbody",
+ "nbody-simulation"
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+ "description": "Routines to plot magnetic fields of planets in our solar system",
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+ "plotting",
+ "planetary-science",
+ "magnetic-fields",
+ "planetary-data",
+ "planetary",
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- "description": "M6Allele: A toolkit for detection of allele-specific RNA N6-methyladenosine modifications",
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+ "description": "Software for simulations of sediment-laden Earth surface flows",
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+ "debris-flow",
+ "fluid-simulation",
+ "geophysical-fluid-dynamics",
+ "granular-flow",
+ "morphodynamics",
+ "natural-hazards-modelling",
+ "shallow-water-equations"
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+ "description": "Tools for Flexible Spectroscopic Inference",
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+ "starfish",
+ "python",
+ "spectra",
+ "astronomy",
+ "astrophysics",
+ "inference",
+ "mcmc"
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+ "avatar": "https://avatars.githubusercontent.com/u/41943984?v=4",
+ "description": "Software for digital twin research",
"topics": []
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+ "description": "a High-Performance Distributed Solver for Large-Scale Markov Decision Processes (MDP) relying on Inexact Policy Iteration; for Python and C++",
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+ "dynamic-programming",
+ "high-performance-computing",
+ "markov-decision-processes",
+ "mdp",
+ "mpi",
+ "nanobind",
+ "optimal-control",
+ "petsc",
+ "stochastic-optimization",
+ "ethz",
+ "policy-iteration",
+ "optimization",
+ "solver",
+ "stochastic-optimal-control",
+ "cpp",
+ "python",
+ "python3",
+ "mdpsolver"
+ ]
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- "description": "LD Score Regression (LDSC)",
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- "cell-cell-communication",
- "ligand-receptor",
- "python",
- "single-cell",
- "single-cell-rna-seq",
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+ "molecular-modelling"
]
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- "description": "Score-based Diffusion models in JAX.",
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+ "description": "Antimicrobial Resistance Identification By Assembly",
"topics": [
- "diffusion",
- "diffusion-models",
- "equinox",
- "jax",
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- "score-based-generative-models"
+ "genomics",
+ "sequencing",
+ "next-generation-sequencing",
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+ "bioinformatics",
+ "bioinformatics-pipeline",
+ "global-health",
+ "infectious-diseases",
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+ "description": "Python3 scripts to manipulate FASTA and FASTQ files",
"topics": [
- "generative-models",
- "jax",
- "normalizing-flows",
- "simulation-based-inference"
+ "genomics",
+ "sequencing",
+ "next-generation-sequencing",
+ "research",
+ "bioinformatics",
+ "global-health",
+ "infectious-diseases",
+ "pathogen"
]
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- "description": "Python package for taking a photo and movie of an exo Earth",
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+ "description": "Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation",
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+ "genomics",
+ "sequencing",
+ "next-generation-sequencing",
+ "research",
+ "bioinformatics",
+ "bioinformatics-pipeline",
+ "global-health",
+ "infectious-diseases",
+ "pathogen"
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+ "description": "Circlator is a tool to circularize genome assemblies. The input is a genome assembly in FASTA format and corrected PacBio or nanopore reads in FASTA or FASTQ format. Circlator will attempt to identify each circular sequence and output a linearised version of it. It does this by assembling all reads that map to contig ends and comparing the resulting contigs with the input assembly.",
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+ "genomics",
+ "sequencing",
+ "next-generation-sequencing",
+ "research",
+ "bioinformatics",
+ "bioinformatics-pipeline",
+ "global-health",
+ "infectious-diseases",
+ "pathogen"
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- "description": "A simple library for parsing messages of Health Level 7 (HL7) version 2.x into Python objects.",
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+ "avatar": "https://avatars.githubusercontent.com/u/130803?v=4",
+ "description": "Finds SNP sites from a multi-FASTA alignment file",
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+ "sequencing",
+ "next-generation-sequencing",
+ "research",
+ "bioinformatics",
+ "bioinformatics-pipeline",
+ "global-health",
+ "infectious-diseases",
+ "pathogen"
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+ "description": "de novo virus assembler of Illumina paired reads",
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+ "sequencing",
+ "next-generation-sequencing",
+ "research",
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+ "bioinformatics-pipeline",
+ "global-health",
+ "infectious-diseases",
+ "pathogen"
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- "description": "Software for optical data force analysis / JPK Nanowizard",
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+ "description": "Python3 module for running MUMmer and reading the output",
"topics": []
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+ "description": "A set of tools to analyse the output from TraDIS analyses",
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+ "sequencing",
+ "next-generation-sequencing",
+ "research",
+ "bioinformatics",
+ "bioinformatics-pipeline",
+ "global-health",
+ "infectious-diseases",
+ "pathogen"
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- "fits-files",
- "grib",
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+ "sequencing",
+ "next-generation-sequencing",
+ "research",
+ "bioinformatics",
+ "global-health",
+ "infectious-diseases",
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]
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- "archaeological-science",
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- "network-analysis",
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+ "description": "Adaptive large neighbourhood search (and more!) in Python.",
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+ "metaheuristic",
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+ "python",
+ "travelling-salesman-problem",
+ "cutting-stock-problem",
+ "vehicle-routing-problem",
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+ "cosmology",
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+ "description": "Bias Emulator for Halo Power Spectrum ",
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+ "protein-structure"
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+ "description": "Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.",
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+ "astrostatistics",
+ "astrophysics",
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+ "computational-fluid-dynamics",
+ "gas-dynamics",
+ "radiation-transport",
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- "containers",
- "wdl",
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+ "binary-evolution",
+ "astrophysics",
+ "astronomy",
+ "stellar-astrophysics",
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+ "description": "Public Kerr metric polarized ray tracing radiative transfer code",
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- "crowdtruth-work-ow",
- "quality",
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]
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+ "hut23-845",
+ "bokeh",
+ "jupyter-notebook",
+ "missing-data",
+ "python",
+ "set-visualization"
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- "description": "ASSUME - Agent-based Simulation for Studying and Understanding Market Evolution",
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+ "description": "Repository for mini-projects in the Data science for Sustainable development project ",
+ "topics": [
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- "jax",
- "probabilistic-programming",
- "bayesian-inference",
- "machine-learning"
+ "pybamm",
+ "battery-models",
+ "solvers",
+ "python",
+ "batteries",
+ "simulation"
]
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- "description": "A software for sleep analysis in Drosophila",
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+ "rel": "/software/repository/github/galtay/urchin",
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+ "rel": "/software/repository/github/galtay/sphray",
+ "avatar": "https://avatars.githubusercontent.com/u/663051?v=4",
+ "description": " THIS CODE IS HERE FOR ARCHIVAL PURPOSES AND IS NOT MAINTAINED",
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+ "machine-learning",
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+ "bacteria",
+ "genomics",
+ "wgs",
+ "nextflow-pipeline",
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+ "description": "Algorithms for performing angular differential imaging (ADI)",
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+ "hci",
+ "imaging",
+ "reduction",
+ "adi"
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- "topics": []
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+ "description": "R package for simulation of caffeine concentration