From 29cde848d6a655e9f2c4f4f48d764b4033237399 Mon Sep 17 00:00:00 2001 From: Adam Wright Date: Wed, 4 Mar 2026 11:23:14 -0500 Subject: [PATCH 1/3] feat: Add TOC, DOI, and Contributors pages with search/sort/filter - Add ContentDataService for fetching data from content-service API - Add TOC page with expandable sub-pathways, sortable columns, status filters - Add DOI page with sortable columns, pagination, NEW/UPDATED filters with counts - Add Contributors page with alphabetical filter, search, sort, pagination - Register routes: content/toc, content/doi, community/contributors - Fix home-latest-news OnInit implementation - Fix content.service to handle wrapped article index JSON - Restyle site-search bar to match new content page search bars Co-Authored-By: Claude Opus 4.6 --- .../website-angular/src/app/app.routes.ts | 5 + .../contributors/contributors.component.html | 144 ++++++++ .../contributors/contributors.component.scss | 285 +++++++++++++++ .../contributors/contributors.component.ts | 185 ++++++++++ .../src/app/content/doi/doi.component.html | 162 +++++++++ .../src/app/content/doi/doi.component.scss | 333 +++++++++++++++++ .../src/app/content/doi/doi.component.ts | 189 ++++++++++ .../src/app/content/toc/toc.component.html | 173 +++++++++ .../src/app/content/toc/toc.component.scss | 338 ++++++++++++++++++ .../src/app/content/toc/toc.component.ts | 173 +++++++++ .../home-latest-news.component.ts | 4 +- .../site-search/site-search.component.html | 30 +- .../site-search/site-search.component.scss | 72 ++-- .../app/site-search/site-search.component.ts | 5 + .../src/services/content-data.service.ts | 73 ++++ .../src/services/content.service.ts | 6 +- 16 files changed, 2133 insertions(+), 44 deletions(-) create mode 100644 projects/website-angular/src/app/content/contributors/contributors.component.html create mode 100644 projects/website-angular/src/app/content/contributors/contributors.component.scss create mode 100644 projects/website-angular/src/app/content/contributors/contributors.component.ts create mode 100644 projects/website-angular/src/app/content/doi/doi.component.html create mode 100644 projects/website-angular/src/app/content/doi/doi.component.scss create mode 100644 projects/website-angular/src/app/content/doi/doi.component.ts create mode 100644 projects/website-angular/src/app/content/toc/toc.component.html create mode 100644 projects/website-angular/src/app/content/toc/toc.component.scss create mode 100644 projects/website-angular/src/app/content/toc/toc.component.ts create mode 100644 projects/website-angular/src/services/content-data.service.ts diff --git a/projects/website-angular/src/app/app.routes.ts b/projects/website-angular/src/app/app.routes.ts index 32ebc4e..8564160 100644 --- a/projects/website-angular/src/app/app.routes.ts +++ b/projects/website-angular/src/app/app.routes.ts @@ -18,6 +18,7 @@ export const routes: Routes = [ { path: 'community/collaboration', loadComponent: () => import('./community/collaboration/collaboration.component').then(m => m.CollaborationComponent), pathMatch: 'full' }, { path: 'community/icon-lib', loadComponent: () => import('./community/icon-lib/icon-lib.component').then(m => m.IconLibComponent), pathMatch: 'full' }, { path: 'community/icon-lib/:id', loadComponent: () => import('./community/icon-lib/icon-lib.component').then(m => m.IconLibComponent), pathMatch: 'full' }, + { path: 'community/contributors', loadComponent: () => import('./content/contributors/contributors.component').then(m => m.ContributorsComponent), pathMatch: 'full' }, //Documentation Pages { path: 'documentation/faq', loadComponent: () => import('./documentation/faq/faq.component').then(m => m.FaqComponent), pathMatch: 'full' }, @@ -29,6 +30,10 @@ export const routes: Routes = [ { path: 'content/reactome-research-spotlight', loadComponent: () => import('./article/article-page/article-page.component').then(m => m.ArticlePageComponent), pathMatch: 'full' }, { path: 'content/reactome-research-spotlight/:slug', loadComponent: () => import('./article/article/article.component').then(m => m.ArticleComponent), pathMatch: 'full' }, + //Content Pages (TOC, DOI) + { path: 'content/toc', loadComponent: () => import('./content/toc/toc.component').then(m => m.TocComponent), pathMatch: 'full' }, + { path: 'content/doi', loadComponent: () => import('./content/doi/doi.component').then(m => m.DoiComponent), pathMatch: 'full' }, + //Search Pages { path: 'content/query', loadComponent: () => import('./search/search.component').then(m => m.SearchComponent) }, { path: 'tools/site-search', loadComponent: () => import('./site-search/site-search.component').then(m => m.SiteSearchComponent) }, diff --git a/projects/website-angular/src/app/content/contributors/contributors.component.html b/projects/website-angular/src/app/content/contributors/contributors.component.html new file mode 100644 index 0000000..e310192 --- /dev/null +++ b/projects/website-angular/src/app/content/contributors/contributors.component.html @@ -0,0 +1,144 @@ + +
+
+ Content +

Contributors

+

+ Reactome authors and reviewers who have contributed pathways and reactions. +

+
+ + +
+
+ search + + @if (searchQuery) { + + } +
+
+ + + @if (!loading && !error) { +
+ + @for (letter of letters; track letter) { + + } +
+ +
+ {{ resultCount }} contributor{{ resultCount !== 1 ? 's' : '' }} + @if (activeLetter) { + starting with "{{ activeLetter }}" + } + @if (searchQuery) { + matching "{{ searchQuery }}" + } +
+ } + + @if (loading) { +
+ +

Loading contributors...

+
+ } + + @if (error && !loading) { +
+ error +

Unable to load data. Please try again later.

+
+ } + + @if (!loading && !error) { + @if (filteredContributors.length === 0) { +
+ search_off +

No contributors found.

+
+ } @else { +
+ + + + + + + + + + + + + @for (c of pagedContributors; track c.person.dbId) { + + + + + + + + + } + +
+ Name + {{ sortIcon('displayName') }} + ORCID + Authored Pathways + {{ sortIcon('authoredPathways') }} + + Reviewed Pathways + {{ sortIcon('reviewedPathways') }} + + Authored Reactions + {{ sortIcon('authoredReactions') }} + + Reviewed Reactions + {{ sortIcon('reviewedReactions') }} +
+ {{ c.person.displayName }} + + @if (c.person.orcidId) { + + {{ c.person.orcidId }} + + } + {{ c.authoredPathways }}{{ c.reviewedPathways }}{{ c.authoredReactions }}{{ c.reviewedReactions }}
+
+ + @if (maxPage > 1) { + + } + } + } +
+ diff --git a/projects/website-angular/src/app/content/contributors/contributors.component.scss b/projects/website-angular/src/app/content/contributors/contributors.component.scss new file mode 100644 index 0000000..31864f7 --- /dev/null +++ b/projects/website-angular/src/app/content/contributors/contributors.component.scss @@ -0,0 +1,285 @@ +.contributors-page { + .page-header { + margin-bottom: 24px; + + .category-badge { + display: inline-block; + padding: 4px 12px; + background: #2d5a7b; + color: white; + border-radius: 4px; + font-size: 0.75rem; + font-weight: 600; + text-transform: uppercase; + letter-spacing: 0.5px; + margin-bottom: 8px; + } + + h1 { + margin: 8px 0; + font-size: 1.75rem; + color: #1a1a1a; + } + + .description { + color: #666; + margin: 0; + } + } + + .search-bar { + margin-bottom: 16px; + + .search-input-wrapper { + display: flex; + align-items: center; + background: #f5f5f5; + border: 1px solid #ddd; + border-radius: 8px; + padding: 8px 12px; + gap: 8px; + + .search-icon { + color: #999; + font-size: 20px; + } + + input { + flex: 1; + border: none; + background: none; + outline: none; + font-size: 0.95rem; + color: #333; + + &::placeholder { + color: #999; + } + } + + .clear-btn { + background: none; + border: none; + cursor: pointer; + color: #999; + padding: 2px; + display: flex; + + &:hover { + color: #333; + } + } + } + } + + .letter-filter { + display: flex; + flex-wrap: wrap; + gap: 4px; + margin-bottom: 16px; + + .letter-chip { + padding: 4px 10px; + border: 1px solid #dee2e6; + border-radius: 4px; + background: white; + color: #495057; + font-size: 0.8rem; + font-weight: 500; + cursor: pointer; + transition: all 0.15s; + + &:hover { + background: #f0f4f8; + border-color: #2d5a7b; + } + + &.active { + background: #2d5a7b; + color: white; + border-color: #2d5a7b; + } + } + } + + .results-info { + font-size: 0.85rem; + color: #666; + margin-bottom: 12px; + } + + .loading-state, + .error-state, + .empty-state { + display: flex; + flex-direction: column; + align-items: center; + justify-content: center; + padding: 48px 24px; + color: #666; + + .material-symbols-rounded { + font-size: 48px; + margin-bottom: 12px; + color: #999; + } + } + + .spinner { + width: 32px; + height: 32px; + border: 3px solid #e0e0e0; + border-top-color: #2d5a7b; + border-radius: 50%; + animation: spin 0.8s linear infinite; + margin-bottom: 12px; + } + + @keyframes spin { + to { transform: rotate(360deg); } + } + + .contributors-table-wrapper { + overflow-x: auto; + } + + .contributors-table { + width: 100%; + border-collapse: collapse; + font-size: 0.875rem; + + th { + text-align: left; + padding: 10px 12px; + background: #f8f9fa; + border-bottom: 2px solid #dee2e6; + font-weight: 600; + color: #495057; + white-space: nowrap; + + &.sortable { + cursor: pointer; + user-select: none; + + &:hover { + background: #e9ecef; + } + + .sort-icon { + font-size: 16px; + vertical-align: middle; + margin-left: 2px; + color: #999; + } + } + } + + td { + padding: 10px 12px; + border-bottom: 1px solid #eee; + vertical-align: top; + } + + tbody tr:hover { + background: #f8f9fa; + } + + .col-name { + min-width: 200px; + } + + .col-orcid { + min-width: 160px; + } + + .col-num { + text-align: right; + min-width: 80px; + + &:is(th) { + text-align: left; + } + } + } + + .person-link { + color: #2d5a7b; + text-decoration: none; + font-weight: 500; + + &:hover { + text-decoration: underline; + } + } + + .orcid-link { + color: #2d5a7b; + text-decoration: none; + font-size: 0.85rem; + + &:hover { + text-decoration: underline; + } + } + + .pagination { + display: flex; + align-items: center; + justify-content: center; + gap: 16px; + padding: 16px 0; + margin-top: 8px; + + .page-btn { + display: flex; + align-items: center; + gap: 4px; + padding: 8px 16px; + border: 1px solid #dee2e6; + border-radius: 6px; + background: white; + color: #2d5a7b; + font-size: 0.875rem; + cursor: pointer; + + &:hover:not(:disabled) { + background: #f0f4f8; + } + + &:disabled { + opacity: 0.5; + cursor: not-allowed; + } + + .material-symbols-rounded { + font-size: 18px; + } + } + + .page-info { + font-size: 0.85rem; + color: #666; + } + } +} + +@media (max-width: 768px) { + .contributors-page { + .letter-filter { + gap: 2px; + + .letter-chip { + padding: 3px 7px; + font-size: 0.75rem; + } + } + + .contributors-table { + font-size: 0.8rem; + + th, td { + padding: 8px 6px; + } + } + } +} diff --git a/projects/website-angular/src/app/content/contributors/contributors.component.ts b/projects/website-angular/src/app/content/contributors/contributors.component.ts new file mode 100644 index 0000000..290b9e5 --- /dev/null +++ b/projects/website-angular/src/app/content/contributors/contributors.component.ts @@ -0,0 +1,185 @@ +import { Component, OnInit, OnDestroy } from '@angular/core'; +import { Subject } from 'rxjs'; +import { debounceTime, distinctUntilChanged, takeUntil } from 'rxjs/operators'; +import { PageLayoutComponent } from '../../page-layout/page-layout.component'; +import { ContentDataService, Contributor } from '../../../services/content-data.service'; + +type SortKey = 'displayName' | 'authoredPathways' | 'reviewedPathways' | 'authoredReactions' | 'reviewedReactions'; +type SortDir = 'asc' | 'desc'; + +const PAGE_SIZE = 50; +const LETTERS = 'ABCDEFGHIJKLMNOPQRSTUVWXYZ'.split(''); + +@Component({ + selector: 'app-contributors', + imports: [PageLayoutComponent], + templateUrl: './contributors.component.html', + styleUrl: './contributors.component.scss' +}) +export class ContributorsComponent implements OnInit, OnDestroy { + loading = true; + error = false; + + allContributors: Contributor[] = []; + filteredContributors: Contributor[] = []; + pagedContributors: Contributor[] = []; + + searchQuery = ''; + activeLetter = ''; + sortKey: SortKey = 'displayName'; + sortDir: SortDir = 'asc'; + currentPage = 1; + + letters = LETTERS; + + private searchSubject = new Subject(); + private destroy$ = new Subject(); + + constructor(private contentDataService: ContentDataService) {} + + ngOnInit() { + this.searchSubject.pipe( + debounceTime(300), + distinctUntilChanged(), + takeUntil(this.destroy$) + ).subscribe(() => { + this.activeLetter = ''; + this.applyFilter(); + }); + + this.loadData(); + } + + ngOnDestroy() { + this.destroy$.next(); + this.destroy$.complete(); + } + + loadData() { + this.loading = true; + this.error = false; + this.contentDataService.getContributors().subscribe({ + next: (data) => { + this.allContributors = data; + this.applyFilter(); + this.loading = false; + }, + error: () => { + this.error = true; + this.loading = false; + } + }); + } + + onSearchInput(event: Event) { + const value = (event.target as HTMLInputElement).value; + this.searchQuery = value; + this.searchSubject.next(value); + } + + clearSearch() { + this.searchQuery = ''; + this.activeLetter = ''; + this.applyFilter(); + } + + selectLetter(letter: string) { + this.searchQuery = ''; + this.activeLetter = this.activeLetter === letter ? '' : letter; + this.applyFilter(); + } + + selectAll() { + this.activeLetter = ''; + this.searchQuery = ''; + this.applyFilter(); + } + + applyFilter() { + let results = this.allContributors; + + if (this.searchQuery.trim()) { + const q = this.searchQuery.toLowerCase().trim(); + results = results.filter(c => + c.person.displayName?.toLowerCase().includes(q) || + c.person.surname?.toLowerCase().includes(q) || + c.person.firstname?.toLowerCase().includes(q) || + c.person.orcidId?.toLowerCase().includes(q) + ); + } else if (this.activeLetter) { + results = results.filter(c => { + const surname = c.person.surname || c.person.displayName || ''; + return surname.toUpperCase().startsWith(this.activeLetter); + }); + } + + this.filteredContributors = this.sortList(results); + this.currentPage = 1; + this.updatePage(); + } + + toggleSort(key: SortKey) { + if (this.sortKey === key) { + this.sortDir = this.sortDir === 'asc' ? 'desc' : 'asc'; + } else { + this.sortKey = key; + this.sortDir = key === 'displayName' ? 'asc' : 'desc'; + } + this.filteredContributors = this.sortList(this.filteredContributors); + this.updatePage(); + } + + sortIcon(key: SortKey): string { + if (this.sortKey !== key) return 'unfold_more'; + return this.sortDir === 'asc' ? 'arrow_upward' : 'arrow_downward'; + } + + private sortList(list: Contributor[]): Contributor[] { + const dir = this.sortDir === 'asc' ? 1 : -1; + return [...list].sort((a, b) => { + if (this.sortKey === 'displayName') { + const va = (a.person.surname || a.person.displayName || '').toLowerCase(); + const vb = (b.person.surname || b.person.displayName || '').toLowerCase(); + return va < vb ? -dir : va > vb ? dir : 0; + } + const va = (a as any)[this.sortKey] || 0; + const vb = (b as any)[this.sortKey] || 0; + return (va - vb) * dir; + }); + } + + updatePage() { + const start = (this.currentPage - 1) * PAGE_SIZE; + this.pagedContributors = this.filteredContributors.slice(start, start + PAGE_SIZE); + } + + get maxPage(): number { + return Math.ceil(this.filteredContributors.length / PAGE_SIZE) || 1; + } + + prevPage() { + if (this.currentPage > 1) { + this.currentPage--; + this.updatePage(); + } + } + + nextPage() { + if (this.currentPage < this.maxPage) { + this.currentPage++; + this.updatePage(); + } + } + + personUrl(dbId: number): string { + return `/content/detail/person/${dbId}`; + } + + orcidUrl(orcidId: string): string { + return `https://orcid.org/${orcidId}`; + } + + get resultCount(): number { + return this.filteredContributors.length; + } +} diff --git a/projects/website-angular/src/app/content/doi/doi.component.html b/projects/website-angular/src/app/content/doi/doi.component.html new file mode 100644 index 0000000..b5007ee --- /dev/null +++ b/projects/website-angular/src/app/content/doi/doi.component.html @@ -0,0 +1,162 @@ + +
+
+ Content +

DOI Listing

+

+ Browse Reactome pathways with Digital Object Identifiers (DOIs). +

+
+ + +
+
+ search + + @if (searchQuery) { + + } +
+
+ + @if (!loading && !error) { +
+ + +
+ +
+ {{ resultCount }} pathway{{ resultCount !== 1 ? 's' : '' }} + @if (statusFilter) { + with status "{{ statusFilter }}" + } + @if (searchQuery) { + matching "{{ searchQuery }}" + } +
+ } + + @if (loading) { +
+ +

Loading DOI data...

+
+ } + + @if (error && !loading) { +
+ error +

Unable to load data. Please try again later.

+
+ } + + @if (!loading && !error) { + @if (filteredPathways.length === 0) { +
+ search_off +

No pathways found.

+
+ } @else { +
+ + + + + + + + + + + + + @for (pathway of pagedPathways; track pathway.stId) { + + + + + + + + + } + +
+ Topic + {{ sortIcon('displayName') }} + + DOI + {{ sortIcon('doi') }} + Authors + Released + {{ sortIcon('releaseDate') }} + ReviewersEditors
+
+ {{ pathway.displayName }} + @if (pathway.releaseStatus === 'NEW') { + NEW + } + @if (pathway.releaseStatus === 'UPDATED') { + UPDATED + } + {{ pathway.species }} +
+ 		+ @if (pathway.doi) { + + {{ pathway.doi }} + + } + + + @for (author of pathway.authors; track author.dbId; let last = $last) { + {{ author.displayName }}{{ last ? '' : ', ' }} + } + + {{ pathway.releaseDate }} + + @for (reviewer of pathway.reviewers; track reviewer.dbId; let last = $last) { + {{ reviewer.displayName }}{{ last ? '' : ', ' }} + } + + + + @for (editor of pathway.editors; track editor.dbId; let last = $last) { + {{ editor.displayName }}{{ last ? '' : ', ' }} + } + +
+
+ + @if (maxPage > 1) { + + } + } + } +
+ diff --git a/projects/website-angular/src/app/content/doi/doi.component.scss b/projects/website-angular/src/app/content/doi/doi.component.scss new file mode 100644 index 0000000..85290f2 --- /dev/null +++ b/projects/website-angular/src/app/content/doi/doi.component.scss @@ -0,0 +1,333 @@ +.doi-page { + .page-header { + margin-bottom: 24px; + + .category-badge { + display: inline-block; + padding: 4px 12px; + background: #2d5a7b; + color: white; + border-radius: 4px; + font-size: 0.75rem; + font-weight: 600; + text-transform: uppercase; + letter-spacing: 0.5px; + margin-bottom: 8px; + } + + h1 { + margin: 8px 0; + font-size: 1.75rem; + color: #1a1a1a; + } + + .description { + color: #666; + margin: 0; + } + } + + .search-bar { + margin-bottom: 16px; + + .search-input-wrapper { + display: flex; + align-items: center; + background: #f5f5f5; + border: 1px solid #ddd; + border-radius: 8px; + padding: 8px 12px; + gap: 8px; + + .search-icon { + color: #999; + font-size: 20px; + } + + input { + flex: 1; + border: none; + background: none; + outline: none; + font-size: 0.95rem; + color: #333; + + &::placeholder { + color: #999; + } + } + + .clear-btn { + background: none; + border: none; + cursor: pointer; + color: #999; + padding: 2px; + display: flex; + + &:hover { + color: #333; + } + } + } + } + + .status-filters { + display: flex; + gap: 8px; + margin-bottom: 12px; + + .status-chip { + padding: 5px 14px; + border-radius: 4px; + font-size: 0.8rem; + font-weight: 700; + text-transform: uppercase; + cursor: pointer; + transition: all 0.15s; + + &.new { + border: 1px solid #155724; + background: white; + color: #155724; + + &.active { + background: #d4edda; + } + } + + &.updated { + border: 1px solid #004085; + background: white; + color: #004085; + + &.active { + background: #cce5ff; + } + } + + &:hover { + opacity: 0.8; + } + + .chip-count { + margin-left: 4px; + opacity: 0.7; + } + } + } + + .results-info { + font-size: 0.85rem; + color: #666; + margin-bottom: 12px; + } + + .loading-state, + .error-state, + .empty-state { + display: flex; + flex-direction: column; + align-items: center; + justify-content: center; + padding: 48px 24px; + color: #666; + + .material-symbols-rounded { + font-size: 48px; + margin-bottom: 12px; + color: #999; + } + } + + .spinner { + width: 32px; + height: 32px; + border: 3px solid #e0e0e0; + border-top-color: #2d5a7b; + border-radius: 50%; + animation: spin 0.8s linear infinite; + margin-bottom: 12px; + } + + @keyframes spin { + to { transform: rotate(360deg); } + } + + .doi-table-wrapper { + overflow-x: auto; + } + + .doi-table { + width: 100%; + border-collapse: collapse; + font-size: 0.875rem; + + th { + text-align: left; + padding: 10px 12px; + background: #f8f9fa; + border-bottom: 2px solid #dee2e6; + font-weight: 600; + color: #495057; + white-space: nowrap; + + &.sortable { + cursor: pointer; + user-select: none; + + &:hover { + background: #e9ecef; + } + + .sort-icon { + font-size: 16px; + vertical-align: middle; + margin-left: 2px; + color: #999; + } + } + } + + td { + padding: 10px 12px; + border-bottom: 1px solid #eee; + vertical-align: top; + } + + tbody tr:hover { + background: #f8f9fa; + } + + .col-topic { + min-width: 220px; + } + + .col-doi { + min-width: 140px; + } + + .col-authors, + .col-reviewers, + .col-editors { + min-width: 150px; + } + + .col-date { + white-space: nowrap; + min-width: 100px; + } + } + + .topic-info { + display: flex; + flex-direction: column; + gap: 2px; + } + + .pathway-name { + font-weight: 500; + color: #1a1a1a; + } + + .species-name { + font-size: 0.8rem; + color: #888; + font-style: italic; + } + + .status-badge { + display: inline-block; + padding: 1px 6px; + border-radius: 3px; + font-size: 0.7rem; + font-weight: 700; + text-transform: uppercase; + width: fit-content; + + &.new { + background: #d4edda; + color: #155724; + } + + &.updated { + background: #cce5ff; + color: #004085; + } + } + + .doi-link { + color: #2d5a7b; + text-decoration: none; + font-size: 0.85rem; + + &:hover { + text-decoration: underline; + } + } + + .person-list { + line-height: 1.5; + } + + .person-link { + color: #2d5a7b; + text-decoration: none; + + &:hover { + text-decoration: underline; + } + } + + .pagination { + display: flex; + align-items: center; + justify-content: center; + gap: 16px; + padding: 16px 0; + margin-top: 8px; + + .page-btn { + display: flex; + align-items: center; + gap: 4px; + padding: 8px 16px; + border: 1px solid #dee2e6; + border-radius: 6px; + background: white; + color: #2d5a7b; + font-size: 0.875rem; + cursor: pointer; + + &:hover:not(:disabled) { + background: #f0f4f8; + } + + &:disabled { + opacity: 0.5; + cursor: not-allowed; + } + + .material-symbols-rounded { + font-size: 18px; + } + } + + .page-info { + font-size: 0.85rem; + color: #666; + } + } +} + +@media (max-width: 768px) { + .doi-page { + .doi-table { + font-size: 0.8rem; + + th, td { + padding: 8px 6px; + } + } + } +} diff --git a/projects/website-angular/src/app/content/doi/doi.component.ts b/projects/website-angular/src/app/content/doi/doi.component.ts new file mode 100644 index 0000000..00377ac --- /dev/null +++ b/projects/website-angular/src/app/content/doi/doi.component.ts @@ -0,0 +1,189 @@ +import { Component, OnInit, OnDestroy } from '@angular/core'; +import { Subject } from 'rxjs'; +import { debounceTime, distinctUntilChanged, takeUntil } from 'rxjs/operators'; +import { PageLayoutComponent } from '../../page-layout/page-layout.component'; +import { ContentDataService, DoiPathway, SimplePerson } from '../../../services/content-data.service'; + +type SortKey = 'displayName' | 'doi' | 'releaseDate' | 'species'; +type SortDir = 'asc' | 'desc'; + +const PAGE_SIZE = 25; + +@Component({ + selector: 'app-doi', + imports: [PageLayoutComponent], + templateUrl: './doi.component.html', + styleUrl: './doi.component.scss' +}) +export class DoiComponent implements OnInit, OnDestroy { + loading = true; + error = false; + + allPathways: DoiPathway[] = []; + filteredPathways: DoiPathway[] = []; + pagedPathways: DoiPathway[] = []; + + searchQuery = ''; + statusFilter: '' | 'NEW' | 'UPDATED' = ''; + sortKey: SortKey = 'displayName'; + sortDir: SortDir = 'asc'; + currentPage = 1; + + private searchSubject = new Subject(); + private destroy$ = new Subject(); + + constructor(private contentDataService: ContentDataService) {} + + ngOnInit() { + this.searchSubject.pipe( + debounceTime(300), + distinctUntilChanged(), + takeUntil(this.destroy$) + ).subscribe(() => { + this.applyFilter(); + }); + + this.loadData(); + } + + ngOnDestroy() { + this.destroy$.next(); + this.destroy$.complete(); + } + + loadData() { + this.loading = true; + this.error = false; + this.contentDataService.getDoiPathways().subscribe({ + next: (data) => { + this.allPathways = data; + this.applyFilter(); + this.loading = false; + }, + error: () => { + this.error = true; + this.loading = false; + } + }); + } + + onSearchInput(event: Event) { + const value = (event.target as HTMLInputElement).value; + this.searchQuery = value; + this.searchSubject.next(value); + } + + clearSearch() { + this.searchQuery = ''; + this.applyFilter(); + } + + setStatusFilter(status: '' | 'NEW' | 'UPDATED') { + this.statusFilter = this.statusFilter === status ? '' : status; + this.applyFilter(); + } + + applyFilter() { + const q = this.searchQuery.toLowerCase().trim(); + let results = this.allPathways; + + if (this.statusFilter) { + results = results.filter(p => p.releaseStatus === this.statusFilter); + } + + if (q) { + results = results.filter(p => + p.displayName.toLowerCase().includes(q) || + p.species?.toLowerCase().includes(q) || + p.doi?.toLowerCase().includes(q) || + this.personsMatch(p.authors, q) || + this.personsMatch(p.reviewers, q) || + this.personsMatch(p.editors, q) + ); + } + this.filteredPathways = this.sortList(results); + this.currentPage = 1; + this.updatePage(); + } + + private personsMatch(persons: SimplePerson[], q: string): boolean { + return persons?.some(p => + p.displayName?.toLowerCase().includes(q) || + p.surname?.toLowerCase().includes(q) || + p.firstname?.toLowerCase().includes(q) + ); + } + + toggleSort(key: SortKey) { + if (this.sortKey === key) { + this.sortDir = this.sortDir === 'asc' ? 'desc' : 'asc'; + } else { + this.sortKey = key; + this.sortDir = 'asc'; + } + this.filteredPathways = this.sortList(this.filteredPathways); + this.updatePage(); + } + + sortIcon(key: SortKey): string { + if (this.sortKey !== key) return 'unfold_more'; + return this.sortDir === 'asc' ? 'arrow_upward' : 'arrow_downward'; + } + + private sortList(list: DoiPathway[]): DoiPathway[] { + const dir = this.sortDir === 'asc' ? 1 : -1; + return [...list].sort((a, b) => { + const va = (a[this.sortKey] || '').toLowerCase(); + const vb = (b[this.sortKey] || '').toLowerCase(); + return va < vb ? -dir : va > vb ? dir : 0; + }); + } + + updatePage() { + const start = (this.currentPage - 1) * PAGE_SIZE; + this.pagedPathways = this.filteredPathways.slice(start, start + PAGE_SIZE); + } + + get maxPage(): number { + return Math.ceil(this.filteredPathways.length / PAGE_SIZE) || 1; + } + + prevPage() { + if (this.currentPage > 1) { + this.currentPage--; + this.updatePage(); + } + } + + nextPage() { + if (this.currentPage < this.maxPage) { + this.currentPage++; + this.updatePage(); + } + } + + personNames(persons: SimplePerson[]): string { + if (!persons?.length) return ''; + return persons.map(p => p.displayName).join(', '); + } + + personUrl(person: SimplePerson): string { + return `/content/detail/person/${person.dbId}`; + } + + doiUrl(doi: string): string { + return `https://doi.org/${doi}`; + } + + get resultCount(): number { + return this.filteredPathways.length; + } + + get newCount(): number { + return this.allPathways.filter(p => p.releaseStatus === 'NEW').length; + } + + get updatedCount(): number { + return this.allPathways.filter(p => p.releaseStatus === 'UPDATED').length; + } +} diff --git a/projects/website-angular/src/app/content/toc/toc.component.html b/projects/website-angular/src/app/content/toc/toc.component.html new file mode 100644 index 0000000..2cd7b8d --- /dev/null +++ b/projects/website-angular/src/app/content/toc/toc.component.html @@ -0,0 +1,173 @@ + +
+
+ Content +

Table of Contents

+

+ Browse all Reactome pathways with their authors, reviewers, and editors. +

+
+ + +
+
+ search + + @if (searchQuery) { + + } +
+
+ + @if (!loading && !error) { +
+ + +
+ +
+ {{ resultCount }} pathway{{ resultCount !== 1 ? 's' : '' }} + @if (statusFilter) { + with status "{{ statusFilter }}" + } + @if (searchQuery) { + matching "{{ searchQuery }}" + } +
+ } + + @if (loading) { +
+ +

Loading Table of Contents...

+
+ } + + @if (error && !loading) { +
+ error +

Unable to load data. Please try again later.

+
+ } + + @if (!loading && !error) { + @if (filteredPathways.length === 0) { +
+ search_off +

No pathways found.

+
+ } @else { +
+ + + + + + + + + + + + + @for (pathway of filteredPathways; track pathway.stId) { + + + + + + + + + + + @if (isExpanded(pathway.stId) && pathway.subpathways?.length) { + @for (sub of pathway.subpathways; track sub.stId) { + + + + + } + } + } + +
+ Topic + {{ sortIcon('displayName') }} + Authors + Created + {{ sortIcon('releaseDate') }} + ReviewersEditors
+ @if (pathway.subpathways?.length) { + + } + +
+ {{ pathway.displayName }} + @if (pathway.releaseStatus === 'NEW') { + NEW + } + @if (pathway.releaseStatus === 'UPDATED') { + UPDATED + } + {{ pathway.species }} + @if (pathway.doi) { + + {{ pathway.doi }} + + } +
+ 		+ + @for (author of pathway.authors; track author.dbId; let last = $last) { + {{ author.displayName }}{{ last ? '' : ', ' }} + } + + {{ pathway.releaseDate }} + + @for (reviewer of pathway.reviewers; track reviewer.dbId; let last = $last) { + {{ reviewer.displayName }}{{ last ? '' : ', ' }} + } + + + + @for (editor of pathway.editors; track editor.dbId; let last = $last) { + {{ editor.displayName }}{{ last ? '' : ', ' }} + } + +
+
+ ↳ + {{ sub.displayName }} + {{ sub.speciesName }} + @if (sub.doi) { + + {{ sub.doi }} + + } +
+
+
+ } + } +
+ diff --git a/projects/website-angular/src/app/content/toc/toc.component.scss b/projects/website-angular/src/app/content/toc/toc.component.scss new file mode 100644 index 0000000..d6bb00d --- /dev/null +++ b/projects/website-angular/src/app/content/toc/toc.component.scss @@ -0,0 +1,338 @@ +.toc-page { + .page-header { + margin-bottom: 24px; + + .category-badge { + display: inline-block; + padding: 4px 12px; + background: #2d5a7b; + color: white; + border-radius: 4px; + font-size: 0.75rem; + font-weight: 600; + text-transform: uppercase; + letter-spacing: 0.5px; + margin-bottom: 8px; + } + + h1 { + margin: 8px 0; + font-size: 1.75rem; + color: #1a1a1a; + } + + .description { + color: #666; + margin: 0; + } + } + + .search-bar { + margin-bottom: 16px; + + .search-input-wrapper { + display: flex; + align-items: center; + background: #f5f5f5; + border: 1px solid #ddd; + border-radius: 8px; + padding: 8px 12px; + gap: 8px; + + .search-icon { + color: #999; + font-size: 20px; + } + + input { + flex: 1; + border: none; + background: none; + outline: none; + font-size: 0.95rem; + color: #333; + + &::placeholder { + color: #999; + } + } + + .clear-btn { + background: none; + border: none; + cursor: pointer; + color: #999; + padding: 2px; + display: flex; + + &:hover { + color: #333; + } + } + } + } + + .status-filters { + display: flex; + gap: 8px; + margin-bottom: 12px; + + .status-chip { + padding: 5px 14px; + border-radius: 4px; + font-size: 0.8rem; + font-weight: 700; + text-transform: uppercase; + cursor: pointer; + transition: all 0.15s; + + &.new { + border: 1px solid #155724; + background: white; + color: #155724; + + &.active { + background: #d4edda; + } + } + + &.updated { + border: 1px solid #004085; + background: white; + color: #004085; + + &.active { + background: #cce5ff; + } + } + + &:hover { + opacity: 0.8; + } + + .chip-count { + margin-left: 4px; + opacity: 0.7; + } + } + } + + .results-info { + font-size: 0.85rem; + color: #666; + margin-bottom: 12px; + } + + .loading-state, + .error-state, + .empty-state { + display: flex; + flex-direction: column; + align-items: center; + justify-content: center; + padding: 48px 24px; + color: #666; + + .material-symbols-rounded { + font-size: 48px; + margin-bottom: 12px; + color: #999; + } + } + + .spinner { + width: 32px; + height: 32px; + border: 3px solid #e0e0e0; + border-top-color: #2d5a7b; + border-radius: 50%; + animation: spin 0.8s linear infinite; + margin-bottom: 12px; + } + + @keyframes spin { + to { transform: rotate(360deg); } + } + + .toc-table-wrapper { + overflow-x: auto; + } + + .toc-table { + width: 100%; + border-collapse: collapse; + font-size: 0.875rem; + + th { + text-align: left; + padding: 10px 12px; + background: #f8f9fa; + border-bottom: 2px solid #dee2e6; + font-weight: 600; + color: #495057; + white-space: nowrap; + + &.sortable { + cursor: pointer; + user-select: none; + + &:hover { + background: #e9ecef; + } + + .sort-icon { + font-size: 16px; + vertical-align: middle; + margin-left: 2px; + color: #999; + } + } + } + + td { + padding: 10px 12px; + border-bottom: 1px solid #eee; + vertical-align: top; + } + + .col-expand { + width: 36px; + padding: 10px 4px; + } + + .col-topic { + min-width: 250px; + } + + .col-authors, + .col-reviewers, + .col-editors { + min-width: 150px; + } + + .col-date { + white-space: nowrap; + min-width: 100px; + } + } + + .expand-btn { + background: none; + border: none; + cursor: pointer; + padding: 2px; + color: #666; + display: flex; + align-items: center; + + &:hover { + color: #2d5a7b; + } + + .material-symbols-rounded { + font-size: 20px; + } + } + + .pathway-row { + &:hover { + background: #f8f9fa; + } + + &.expanded { + background: #f0f4f8; + } + } + + .sub-pathway-row { + background: #fafbfc; + + &:hover { + background: #f0f4f8; + } + } + + .topic-info { + display: flex; + flex-direction: column; + gap: 2px; + } + + .sub-topic-info { + display: flex; + align-items: baseline; + gap: 6px; + padding-left: 8px; + + .sub-indicator { + color: #999; + font-size: 1rem; + } + } + + .pathway-name { + font-weight: 500; + color: #1a1a1a; + } + + .species-name { + font-size: 0.8rem; + color: #888; + font-style: italic; + } + + .status-badge { + display: inline-block; + padding: 1px 6px; + border-radius: 3px; + font-size: 0.7rem; + font-weight: 700; + text-transform: uppercase; + width: fit-content; + + &.new { + background: #d4edda; + color: #155724; + } + + &.updated { + background: #cce5ff; + color: #004085; + } + } + + .doi-link { + font-size: 0.8rem; + color: #2d5a7b; + text-decoration: none; + + &:hover { + text-decoration: underline; + } + } + + .person-list { + line-height: 1.5; + } + + .person-link { + color: #2d5a7b; + text-decoration: none; + + &:hover { + text-decoration: underline; + } + } +} + +@media (max-width: 768px) { + .toc-page { + .toc-table { + font-size: 0.8rem; + + th, td { + padding: 8px 6px; + } + } + } +} diff --git a/projects/website-angular/src/app/content/toc/toc.component.ts b/projects/website-angular/src/app/content/toc/toc.component.ts new file mode 100644 index 0000000..3c2515b --- /dev/null +++ b/projects/website-angular/src/app/content/toc/toc.component.ts @@ -0,0 +1,173 @@ +import { Component, OnInit, OnDestroy } from '@angular/core'; +import { Subject } from 'rxjs'; +import { debounceTime, distinctUntilChanged, takeUntil } from 'rxjs/operators'; +import { PageLayoutComponent } from '../../page-layout/page-layout.component'; +import { ContentDataService, TocPathway, SimplePerson } from '../../../services/content-data.service'; + +type SortKey = 'displayName' | 'releaseDate'; +type SortDir = 'asc' | 'desc'; + +@Component({ + selector: 'app-toc', + imports: [PageLayoutComponent], + templateUrl: './toc.component.html', + styleUrl: './toc.component.scss' +}) +export class TocComponent implements OnInit, OnDestroy { + loading = true; + error = false; + + allPathways: TocPathway[] = []; + filteredPathways: TocPathway[] = []; + searchQuery = ''; + statusFilter: '' | 'NEW' | 'UPDATED' = ''; + sortKey: SortKey = 'displayName'; + sortDir: SortDir = 'asc'; + expandedStIds = new Set(); + + private searchSubject = new Subject(); + private destroy$ = new Subject(); + + constructor(private contentDataService: ContentDataService) {} + + ngOnInit() { + this.searchSubject.pipe( + debounceTime(300), + distinctUntilChanged(), + takeUntil(this.destroy$) + ).subscribe(() => { + this.applyFilter(); + }); + + this.loadData(); + } + + ngOnDestroy() { + this.destroy$.next(); + this.destroy$.complete(); + } + + loadData() { + this.loading = true; + this.error = false; + this.contentDataService.getTocPathways().subscribe({ + next: (data) => { + this.allPathways = data; + this.filteredPathways = data; + this.loading = false; + }, + error: () => { + this.error = true; + this.loading = false; + } + }); + } + + onSearchInput(event: Event) { + const value = (event.target as HTMLInputElement).value; + this.searchQuery = value; + this.searchSubject.next(value); + } + + clearSearch() { + this.searchQuery = ''; + this.applyFilter(); + } + + setStatusFilter(status: '' | 'NEW' | 'UPDATED') { + this.statusFilter = this.statusFilter === status ? '' : status; + this.applyFilter(); + } + + applyFilter() { + const q = this.searchQuery.toLowerCase().trim(); + let results = this.allPathways; + + if (this.statusFilter) { + results = results.filter(p => p.releaseStatus === this.statusFilter); + } + + if (q) { + results = results.filter(p => + p.displayName.toLowerCase().includes(q) || + p.species?.toLowerCase().includes(q) || + p.doi?.toLowerCase().includes(q) || + this.personsMatch(p.authors, q) || + this.personsMatch(p.reviewers, q) || + this.personsMatch(p.editors, q) || + p.subpathways?.some(s => s.displayName.toLowerCase().includes(q)) + ); + } + + this.filteredPathways = this.sortList(results); + } + + toggleSort(key: SortKey) { + if (this.sortKey === key) { + this.sortDir = this.sortDir === 'asc' ? 'desc' : 'asc'; + } else { + this.sortKey = key; + this.sortDir = 'asc'; + } + this.filteredPathways = this.sortList(this.filteredPathways); + } + + sortIcon(key: SortKey): string { + if (this.sortKey !== key) return 'unfold_more'; + return this.sortDir === 'asc' ? 'arrow_upward' : 'arrow_downward'; + } + + private sortList(list: TocPathway[]): TocPathway[] { + const dir = this.sortDir === 'asc' ? 1 : -1; + return [...list].sort((a, b) => { + const va = (a[this.sortKey] || '').toLowerCase(); + const vb = (b[this.sortKey] || '').toLowerCase(); + return va < vb ? -dir : va > vb ? dir : 0; + }); + } + + private personsMatch(persons: SimplePerson[], q: string): boolean { + return persons?.some(p => + p.displayName?.toLowerCase().includes(q) || + p.surname?.toLowerCase().includes(q) || + p.firstname?.toLowerCase().includes(q) + ); + } + + toggleExpand(stId: string) { + if (this.expandedStIds.has(stId)) { + this.expandedStIds.delete(stId); + } else { + this.expandedStIds.add(stId); + } + } + + isExpanded(stId: string): boolean { + return this.expandedStIds.has(stId); + } + + personNames(persons: SimplePerson[]): string { + if (!persons?.length) return ''; + return persons.map(p => p.displayName).join(', '); + } + + personUrl(person: SimplePerson): string { + return `/content/detail/person/${person.dbId}`; + } + + doiUrl(doi: string): string { + return `https://doi.org/${doi}`; + } + + get resultCount(): number { + return this.filteredPathways.length; + } + + get newCount(): number { + return this.allPathways.filter(p => p.releaseStatus === 'NEW').length; + } + + get updatedCount(): number { + return this.allPathways.filter(p => p.releaseStatus === 'UPDATED').length; + } +} diff --git a/projects/website-angular/src/app/home-page/home-latest-news/home-latest-news.component.ts b/projects/website-angular/src/app/home-page/home-latest-news/home-latest-news.component.ts index 585e69d..d0fc6fa 100644 --- a/projects/website-angular/src/app/home-page/home-latest-news/home-latest-news.component.ts +++ b/projects/website-angular/src/app/home-page/home-latest-news/home-latest-news.component.ts @@ -1,4 +1,4 @@ -import { Component, inject, Input } from '@angular/core'; +import { Component, inject, Input, OnInit } from '@angular/core'; import { ArticleIndexItem } from '../../../types/article'; import { NgForOf, NgFor } from '@angular/common'; import formatDate from '../../../utils/formatDate'; @@ -13,7 +13,7 @@ import { NavOption } from '../../../types/link'; templateUrl: './home-latest-news.component.html', styleUrl: './home-latest-news.component.scss' }) -export class HomeLatestNewsComponent { +export class HomeLatestNewsComponent implements OnInit { contentService = inject(ContentService); navOptions: Record = {}; diff --git a/projects/website-angular/src/app/site-search/site-search.component.html b/projects/website-angular/src/app/site-search/site-search.component.html index c7cd306..c87fdbb 100644 --- a/projects/website-angular/src/app/site-search/site-search.component.html +++ b/projects/website-angular/src/app/site-search/site-search.component.html @@ -6,18 +6,24 @@

Site Search

pages, and more.

-
- - -
+
+
+ search + + @if (query) { + + } +
+
@if (loading) {
Loading search index...
diff --git a/projects/website-angular/src/app/site-search/site-search.component.scss b/projects/website-angular/src/app/site-search/site-search.component.scss index e79c193..a50b468 100644 --- a/projects/website-angular/src/app/site-search/site-search.component.scss +++ b/projects/website-angular/src/app/site-search/site-search.component.scss @@ -16,38 +16,54 @@ h1 { margin: 0 0 $spacing; } -.search-bar-container { - display: flex; - align-items: stretch; - width: 100%; +.search-bar { margin-bottom: $spacing; -} -.search-input { - flex: 1; - padding: 10px 16px; - border: 2px solid var(--primary); - border-radius: 4px; - border-top-right-radius: 0; - border-bottom-right-radius: 0; - font-size: 18px; + .search-input-wrapper { + display: flex; + align-items: center; + background: #f5f5f5; + border: 1px solid #ddd; + border-radius: $border-radius; + padding: 10px 14px; + gap: 10px; - &:focus { - outline: none; - border-color: var(--primary); - } -} + :host-context(.dark) & { + background: rgba(255, 255, 255, 0.08); + border-color: rgba(255, 255, 255, 0.15); + } -.search-button { - padding: 10px 24px; - border: 2px solid var(--primary); - border-radius: 4px; - border-top-left-radius: 0; - border-bottom-left-radius: 0; - background-color: var(--primary); - color: var(--on-primary); - font-size: 18px; - cursor: pointer; + .search-icon { + color: #999; + font-size: 22px; + } + + input { + flex: 1; + border: none; + background: none; + outline: none; + font-size: 1rem; + color: var(--on-surface); + + &::placeholder { + color: #999; + } + } + + .clear-btn { + background: none; + border: none; + cursor: pointer; + color: #999; + padding: 2px; + display: flex; + + &:hover { + color: var(--on-surface); + } + } + } } .loading { diff --git a/projects/website-angular/src/app/site-search/site-search.component.ts b/projects/website-angular/src/app/site-search/site-search.component.ts index f49ad0b..d6d1fd4 100644 --- a/projects/website-angular/src/app/site-search/site-search.component.ts +++ b/projects/website-angular/src/app/site-search/site-search.component.ts @@ -110,6 +110,11 @@ export class SiteSearchComponent implements OnInit, OnDestroy { this.updateUrl(); } + clearSearch(): void { + this.query = ''; + this.doSearch(); + } + filterByCategory(category: string | null): void { this.activeCategory = category; this.buildGroupedResults(); diff --git a/projects/website-angular/src/services/content-data.service.ts b/projects/website-angular/src/services/content-data.service.ts new file mode 100644 index 0000000..0db93f1 --- /dev/null +++ b/projects/website-angular/src/services/content-data.service.ts @@ -0,0 +1,73 @@ +import { Injectable, inject } from '@angular/core'; +import { HttpClient } from '@angular/common/http'; +import { Observable } from 'rxjs'; + +export interface SimplePerson { + dbId: number; + displayName: string; + surname: string; + firstname: string; + orcidId: string | null; +} + +export interface TocSubpathway { + stId: string; + displayName: string; + doi: string | null; + speciesName: string; +} + +export interface TocPathway { + stId: string; + displayName: string; + doi: string | null; + species: string; + releaseDate: string; + reviseDate: string; + releaseStatus: string | null; + authors: SimplePerson[]; + reviewers: SimplePerson[]; + editors: SimplePerson[]; + subpathways: TocSubpathway[]; +} + +export interface DoiPathway { + stId: string; + displayName: string; + doi: string | null; + species: string; + releaseDate: string; + reviseDate: string; + releaseStatus: string | null; + authors: SimplePerson[]; + reviewers: SimplePerson[]; + editors: SimplePerson[]; +} + +export interface Contributor { + person: SimplePerson; + authoredPathways: number; + reviewedPathways: number; + authoredReactions: number; + reviewedReactions: number; +} + +@Injectable({ + providedIn: 'root', +}) +export class ContentDataService { + private http = inject(HttpClient); + private baseUrl = 'https://dev.reactome.org/ContentService/data/content'; + + getTocPathways(): Observable { + return this.http.get(`${this.baseUrl}/toc`); + } + + getDoiPathways(): Observable { + return this.http.get(`${this.baseUrl}/doi`); + } + + getContributors(): Observable { + return this.http.get(`${this.baseUrl}/contributors`); + } +} diff --git a/projects/website-angular/src/services/content.service.ts b/projects/website-angular/src/services/content.service.ts index eb888e7..2e005ce 100644 --- a/projects/website-angular/src/services/content.service.ts +++ b/projects/website-angular/src/services/content.service.ts @@ -85,9 +85,11 @@ export class ContentService { * Get all articles */ getAllArticles(path:string): Observable { - return this.http.get(`${this.contentBasePath}/${path}/index.json`).pipe( + return this.http.get(`${this.contentBasePath}/${path}/index.json`).pipe( map(data => { - return data || [] + if (Array.isArray(data)) return data; + if (data?.articles && Array.isArray(data.articles)) return data.articles; + return []; }), catchError(() => of([])) ); From 44c39eb5dec000b27a5c9bb93bd0a7eafd4ec815 Mon Sep 17 00:00:00 2001 From: Adam Wright Date: Wed, 4 Mar 2026 12:24:19 -0500 Subject: [PATCH 2/3] feat: Add Data Schema browser page Adds /content/schema route with: - Collapsible class hierarchy tree sidebar with search/filter - Properties tab showing own attributes, inherited attributes, and referrals - Entries tab with paginated instance list - Instructions section explaining the data model - Mobile-responsive layout - Routes: /content/schema and /content/schema/:className Co-Authored-By: Claude Opus 4.6 --- .../website-angular/src/app/app.routes.ts | 4 +- .../app/content/schema/schema.component.html | 359 ++++++++++ .../app/content/schema/schema.component.scss | 662 ++++++++++++++++++ .../app/content/schema/schema.component.ts | 346 +++++++++ .../src/services/content-data.service.ts | 50 ++ 5 files changed, 1420 insertions(+), 1 deletion(-) create mode 100644 projects/website-angular/src/app/content/schema/schema.component.html create mode 100644 projects/website-angular/src/app/content/schema/schema.component.scss create mode 100644 projects/website-angular/src/app/content/schema/schema.component.ts diff --git a/projects/website-angular/src/app/app.routes.ts b/projects/website-angular/src/app/app.routes.ts index 8564160..63425fd 100644 --- a/projects/website-angular/src/app/app.routes.ts +++ b/projects/website-angular/src/app/app.routes.ts @@ -30,9 +30,11 @@ export const routes: Routes = [ { path: 'content/reactome-research-spotlight', loadComponent: () => import('./article/article-page/article-page.component').then(m => m.ArticlePageComponent), pathMatch: 'full' }, { path: 'content/reactome-research-spotlight/:slug', loadComponent: () => import('./article/article/article.component').then(m => m.ArticleComponent), pathMatch: 'full' }, - //Content Pages (TOC, DOI) + //Content Pages (TOC, DOI, Schema) { path: 'content/toc', loadComponent: () => import('./content/toc/toc.component').then(m => m.TocComponent), pathMatch: 'full' }, { path: 'content/doi', loadComponent: () => import('./content/doi/doi.component').then(m => m.DoiComponent), pathMatch: 'full' }, + { path: 'content/schema', loadComponent: () => import('./content/schema/schema.component').then(m => m.SchemaComponent), pathMatch: 'full' }, + { path: 'content/schema/:className', loadComponent: () => import('./content/schema/schema.component').then(m => m.SchemaComponent), pathMatch: 'full' }, //Search Pages { path: 'content/query', loadComponent: () => import('./search/search.component').then(m => m.SearchComponent) }, diff --git a/projects/website-angular/src/app/content/schema/schema.component.html b/projects/website-angular/src/app/content/schema/schema.component.html new file mode 100644 index 0000000..2da2a6b --- /dev/null +++ b/projects/website-angular/src/app/content/schema/schema.component.html @@ -0,0 +1,359 @@ + +
+ @if (loading) { +
+ +

Loading data model...

+
+ } @else if (error) { +
+ error +

Failed to load the data model.

+
+ } @else { +
+ + + + + + + +
+ @if (selectedClass) { +
+

{{ selectedClass }}

+ {{ getNodeCount(selectedClass) }} instances +
+ +
+ + +
+ + @if (activeTab === 'properties') { + @if (loadingAttributes) { +
+ +
+ } @else { + + @if (ownAttributes.length > 0) { +
+

Own Attributes

+
+ + + + + + + + + + @for (attr of ownAttributes; track attr.name) { + + + + + + } + +
NameCardinalityValue Type
{{ attr.name }} + {{ attr.cardinality }} + + @for (vt of attr.valueTypes; track vt.name; let last = $last) { + @if (vt.databaseObject && isClassInTree(vt.name)) { + {{ vt.name }} + } @else if (vt.databaseObject) { + {{ vt.name }} + } @else { + {{ vt.name }} + } + @if (!last) { , } + } +
+
+
+ } + + + @if (inheritedAttributes.length > 0) { +
+

+ Inherited Attributes + +

+ @if (showInherited) { +
+ + + + + + + + + + + @for (attr of inheritedAttributes; track attr.name + attr.origin) { + + + + + + + } + +
NameCardinalityValue TypeOrigin
{{ attr.name }} + {{ attr.cardinality }} + + @for (vt of attr.valueTypes; track vt.name; let last = $last) { + @if (vt.databaseObject && isClassInTree(vt.name)) { + {{ vt.name }} + } @else if (vt.databaseObject) { + {{ vt.name }} + } @else { + {{ vt.name }} + } + @if (!last) { , } + } + + @if (isClassInTree(attr.origin)) { + {{ attr.origin }} + } @else { + {{ attr.origin }} + } +
+
+ } +
+ } + + + @if (referrals.length > 0) { +
+

Referrals

+

Other classes that reference {{ selectedClass }}:

+
+ + + + + + + + + + @for (ref of referrals; track ref.name + ref.origin) { + + + + + + } + +
AttributeCardinalityIn Class
{{ ref.name }} + {{ ref.cardinality }} + + @if (isClassInTree(ref.origin)) { + {{ ref.origin }} + } @else { + {{ ref.origin }} + } +
+
+
+ } + + @if (attributesError) { +
+

Could not load attributes. The attributes endpoint may need to be deployed.

+
+ } @else if (ownAttributes.length === 0 && inheritedAttributes.length === 0) { +
+

No attributes found for this class.

+
+ } + +
+
+

+ You can find documentation for the Reactome data model + here. +

+

+ The sidebar on the left shows the hierarchy of Reactome classes. The number + of instances of each class is shown in square brackets and links to a listing + of all instances of that class. +

+

+ The main panel shows attributes of the selected class. + Own attributes, i.e. the ones which are + not inherited from a parent class, are shown separately from inherited ones. +

+

+ + in the Cardinality column indicates + a multi-value attribute. +

+
+ } + } @else if (activeTab === 'entries') { + @if (loadingEntries) { +
+ +
+ } @else { +
+ + {{ entryCount }} entries + @if (totalPages > 1) { + — Page {{ entriesPage }} of {{ totalPages }} + } + +
+ + @if (entries.length > 0) { +
+ + + + + + + + + @for (entry of entries; track entry.dbId) { + + + + + } + +
IdentifierName
+ + {{ entry.stId || entry.dbId }} + + {{ entry.displayName }}
+
+ + @if (totalPages > 1) { + + } + } @else { +
+

No entries found for this class.

+
+ } + } + } + } @else { +
+ schema +

Reactome Data Model Browser

+

Select a class from the hierarchy to view its properties and entries.

+
+ } +
+
+ } +
+ diff --git a/projects/website-angular/src/app/content/schema/schema.component.scss b/projects/website-angular/src/app/content/schema/schema.component.scss new file mode 100644 index 0000000..39d512e --- /dev/null +++ b/projects/website-angular/src/app/content/schema/schema.component.scss @@ -0,0 +1,662 @@ +$spacing: 24px; +$border-radius: 8px; +$sidebar-width: 320px; + +.schema-browser { + min-height: 60vh; +} + +.schema-layout { + display: flex; + gap: $spacing; + align-items: flex-start; +} + +// --- Sidebar --- + +.sidebar-toggle { + display: none; + align-items: center; + gap: 8px; + padding: 8px 16px; + border: 1px solid rgba(0, 0, 0, 0.15); + border-radius: $border-radius; + background: none; + color: var(--on-surface); + font-size: 0.9rem; + cursor: pointer; + margin-bottom: 12px; + + :host-context(.dark) & { + border-color: rgba(255, 255, 255, 0.15); + } + + &:hover { + background: rgba(0, 0, 0, 0.04); + } +} + +.schema-tree { + width: $sidebar-width; + min-width: $sidebar-width; + border: 1px solid rgba(0, 0, 0, 0.1); + border-radius: $border-radius; + background: #fafafa; + position: sticky; + top: 80px; + max-height: calc(100vh - 100px); + display: flex; + flex-direction: column; + + :host-context(.dark) & { + background: rgba(255, 255, 255, 0.03); + border-color: rgba(255, 255, 255, 0.1); + } +} + +.tree-header { + padding: 12px 16px; + border-bottom: 1px solid rgba(0, 0, 0, 0.08); + + :host-context(.dark) & { + border-bottom-color: rgba(255, 255, 255, 0.08); + } + + h3 { + margin: 0; + font-size: 0.95rem; + font-weight: 600; + color: var(--on-surface); + } +} + +.tree-search { + display: flex; + align-items: center; + padding: 8px 12px; + gap: 6px; + border-bottom: 1px solid rgba(0, 0, 0, 0.08); + + :host-context(.dark) & { + border-bottom-color: rgba(255, 255, 255, 0.08); + } + + .search-icon { + color: #999; + font-size: 18px; + } + + input { + flex: 1; + border: none; + background: none; + outline: none; + font-size: 0.85rem; + color: var(--on-surface); + min-width: 0; + + &::placeholder { + color: #999; + } + } + + .clear-btn { + background: none; + border: none; + cursor: pointer; + color: #999; + padding: 0; + display: flex; + + .material-symbols-rounded { + font-size: 16px; + } + + &:hover { + color: var(--on-surface); + } + } +} + +.tree-content { + overflow-y: auto; + flex: 1; + padding: 4px 0; +} + +.tree-node { + display: flex; + align-items: center; + gap: 2px; + min-height: 28px; + cursor: default; + + &.selected { + background: rgba(var(--primary-rgb, 45, 90, 123), 0.1); + + .node-name { + font-weight: 600; + color: var(--primary); + } + } + + &:hover { + background: rgba(0, 0, 0, 0.04); + + :host-context(.dark) & { + background: rgba(255, 255, 255, 0.04); + } + } +} + +.expand-btn { + background: none; + border: none; + cursor: pointer; + padding: 0; + display: flex; + color: #888; + flex-shrink: 0; + + .material-symbols-rounded { + font-size: 18px; + } +} + +.expand-placeholder { + width: 18px; + flex-shrink: 0; +} + +.node-label { + background: none; + border: none; + cursor: pointer; + padding: 2px 4px; + display: flex; + align-items: baseline; + gap: 4px; + font-size: 0.82rem; + text-align: left; + min-width: 0; +} + +.node-name { + color: var(--on-surface); + white-space: nowrap; + overflow: hidden; + text-overflow: ellipsis; +} + +.node-count { + color: #999; + font-size: 0.75rem; + flex-shrink: 0; +} + +// --- Main content --- + +.schema-content { + flex: 1; + min-width: 0; +} + +.class-header { + display: flex; + align-items: baseline; + gap: 12px; + margin-bottom: 16px; + flex-wrap: wrap; + + h1 { + margin: 0; + font-size: 1.6rem; + color: var(--on-surface); + font-family: 'Roboto Mono', monospace; + } + + .instance-count { + color: var(--on-surface-variant); + font-size: 0.9rem; + } +} + +// --- Tabs --- + +.tab-bar { + display: flex; + gap: 0; + border-bottom: 2px solid rgba(0, 0, 0, 0.1); + margin-bottom: $spacing; + + :host-context(.dark) & { + border-bottom-color: rgba(255, 255, 255, 0.1); + } +} + +.tab { + padding: 10px 20px; + border: none; + background: none; + font-size: 0.9rem; + font-weight: 500; + color: var(--on-surface-variant); + cursor: pointer; + border-bottom: 2px solid transparent; + margin-bottom: -2px; + transition: all 0.15s ease; + + &:hover { + color: var(--primary); + } + + &.active { + color: var(--primary); + border-bottom-color: var(--primary); + } +} + +// --- Attribute tables --- + +.attr-section { + margin-bottom: $spacing; + + h2 { + font-size: 1rem; + font-weight: 600; + color: var(--on-surface-variant); + text-transform: uppercase; + letter-spacing: 0.5px; + margin: 0 0 12px; + display: flex; + align-items: center; + gap: 8px; + } +} + +.section-desc { + font-size: 0.85rem; + color: var(--on-surface-variant); + margin: 0 0 12px; +} + +.toggle-inherited { + background: none; + border: 1px solid rgba(0, 0, 0, 0.15); + border-radius: 4px; + padding: 2px 8px; + font-size: 0.75rem; + color: var(--primary); + cursor: pointer; + text-transform: none; + letter-spacing: normal; + font-weight: 500; + + :host-context(.dark) & { + border-color: rgba(255, 255, 255, 0.15); + } + + &:hover { + background: rgba(0, 0, 0, 0.04); + } +} + +.attr-table-wrapper { + overflow-x: auto; +} + +.attr-table { + width: 100%; + border-collapse: collapse; + font-size: 0.875rem; + + th { + text-align: left; + padding: 8px 12px; + background: #f8f9fa; + border-bottom: 2px solid #dee2e6; + font-weight: 600; + color: #495057; + white-space: nowrap; + + :host-context(.dark) & { + background: rgba(255, 255, 255, 0.05); + border-bottom-color: rgba(255, 255, 255, 0.12); + color: var(--on-surface-variant); + } + } + + td { + padding: 7px 12px; + border-bottom: 1px solid #eee; + vertical-align: top; + + :host-context(.dark) & { + border-bottom-color: rgba(255, 255, 255, 0.06); + } + } + + tbody tr:hover { + background: #f8f9fa; + + :host-context(.dark) & { + background: rgba(255, 255, 255, 0.03); + } + } + + &.inherited { + td { + opacity: 0.8; + } + } +} + +.attr-name { + font-family: 'Roboto Mono', monospace; + font-size: 0.82rem; + color: var(--on-surface); +} + +.attr-card { + white-space: nowrap; +} + +.cardinality-badge { + display: inline-block; + min-width: 20px; + text-align: center; + padding: 1px 6px; + border-radius: 3px; + font-size: 0.75rem; + font-weight: 600; + font-family: 'Roboto Mono', monospace; + background: rgba(0, 0, 0, 0.06); + color: var(--on-surface-variant); + + :host-context(.dark) & { + background: rgba(255, 255, 255, 0.08); + } +} + +.type-link { + color: var(--primary); + cursor: pointer; + text-decoration: none; + + &:hover { + text-decoration: underline; + } + + &.db-object { + font-weight: 500; + } +} + +.type-name { + &.db-object { + color: var(--primary); + font-weight: 500; + } + + &.primitive { + color: var(--on-surface-variant); + } +} + +.type-sep { + color: var(--on-surface-variant); +} + +.attr-origin { + font-size: 0.82rem; +} + +// --- Entries table --- + +.entries-header { + margin-bottom: 12px; +} + +.entries-count { + font-size: 0.9rem; + color: var(--on-surface-variant); +} + +.entries-table-wrapper { + overflow-x: auto; +} + +.entries-table { + width: 100%; + border-collapse: collapse; + font-size: 0.875rem; + + th { + text-align: left; + padding: 8px 12px; + background: #f8f9fa; + border-bottom: 2px solid #dee2e6; + font-weight: 600; + color: #495057; + + :host-context(.dark) & { + background: rgba(255, 255, 255, 0.05); + border-bottom-color: rgba(255, 255, 255, 0.12); + color: var(--on-surface-variant); + } + } + + td { + padding: 7px 12px; + border-bottom: 1px solid #eee; + + :host-context(.dark) & { + border-bottom-color: rgba(255, 255, 255, 0.06); + } + } + + tbody tr:hover { + background: #f8f9fa; + + :host-context(.dark) & { + background: rgba(255, 255, 255, 0.03); + } + } +} + +.entry-id { + white-space: nowrap; + + a { + color: var(--primary); + text-decoration: none; + + &:hover { + text-decoration: underline; + } + } +} + +.entry-name { + color: var(--on-surface); +} + +// --- Pagination --- + +.pagination { + display: flex; + align-items: center; + justify-content: center; + gap: 4px; + margin-top: 16px; + flex-wrap: wrap; +} + +.page-btn { + display: inline-flex; + align-items: center; + justify-content: center; + min-width: 36px; + height: 36px; + padding: 0 8px; + border: 1px solid rgba(0, 0, 0, 0.15); + border-radius: 6px; + background: none; + color: var(--on-surface); + font-size: 0.85rem; + cursor: pointer; + transition: all 0.15s ease; + + :host-context(.dark) & { + border-color: rgba(255, 255, 255, 0.15); + } + + .material-symbols-rounded { + font-size: 20px; + } + + &:hover:not(:disabled) { + border-color: var(--primary); + color: var(--primary); + } + + &.active { + background: var(--primary); + border-color: var(--primary); + color: var(--on-primary); + } + + &:disabled { + opacity: 0.35; + cursor: default; + } +} + +// --- Loading / empty / error --- + +.loading-state, +.error-state, +.welcome-state { + display: flex; + flex-direction: column; + align-items: center; + justify-content: center; + padding: 48px 24px; + color: var(--on-surface-variant); + text-align: center; + + .material-symbols-rounded { + font-size: 48px; + margin-bottom: 12px; + opacity: 0.4; + } + + h2 { + margin: 0 0 8px; + color: var(--on-surface); + } + + p { + margin: 0; + } + + &.small { + padding: 24px; + + .spinner { + width: 24px; + height: 24px; + } + } +} + +.empty-section { + padding: 24px; + text-align: center; + color: var(--on-surface-variant); +} + +.instructions { + margin-top: $spacing; + color: var(--on-surface-variant); + font-size: 0.85rem; + line-height: 1.6; + + hr { + border: none; + border-top: 1px solid rgba(0, 0, 0, 0.1); + margin-bottom: 12px; + + :host-context(.dark) & { + border-top-color: rgba(255, 255, 255, 0.1); + } + } + + p { + margin: 0 0 8px; + } + + a { + color: var(--primary); + text-decoration: none; + + &:hover { + text-decoration: underline; + } + } + + .own-highlight { + color: var(--primary); + font-weight: 600; + } +} + +.spinner { + width: 32px; + height: 32px; + border: 3px solid #e0e0e0; + border-top-color: var(--primary); + border-radius: 50%; + animation: spin 0.8s linear infinite; + margin-bottom: 12px; +} + +@keyframes spin { + to { + transform: rotate(360deg); + } +} + +// --- Responsive --- + +@media (max-width: 900px) { + .sidebar-toggle { + display: flex; + } + + .schema-layout { + flex-direction: column; + } + + .schema-tree { + display: none; + position: fixed; + top: 0; + left: 0; + right: 0; + bottom: 0; + width: 100%; + max-height: 100vh; + z-index: 1000; + border-radius: 0; + border: none; + + &.open { + display: flex; + } + } + + .schema-content { + width: 100%; + } +} diff --git a/projects/website-angular/src/app/content/schema/schema.component.ts b/projects/website-angular/src/app/content/schema/schema.component.ts new file mode 100644 index 0000000..8eabb68 --- /dev/null +++ b/projects/website-angular/src/app/content/schema/schema.component.ts @@ -0,0 +1,346 @@ +import { Component, OnInit, OnDestroy } from '@angular/core'; +import { ActivatedRoute, Router, RouterLink } from '@angular/router'; +import { Subject } from 'rxjs'; +import { takeUntil } from 'rxjs/operators'; +import { PageLayoutComponent } from '../../page-layout/page-layout.component'; +import { + ContentDataService, + SchemaNode, + SchemaAttribute, + SimpleDatabaseObject, +} from '../../../services/content-data.service'; + +interface FlatTreeNode { + className: string; + count: number; + depth: number; + hasChildren: boolean; + expanded: boolean; +} + +@Component({ + selector: 'app-schema', + imports: [PageLayoutComponent, RouterLink], + templateUrl: './schema.component.html', + styleUrl: './schema.component.scss', +}) +export class SchemaComponent implements OnInit, OnDestroy { + private destroy$ = new Subject(); + + // Tree state + treeRoot: SchemaNode | null = null; + flatTree: FlatTreeNode[] = []; + expandedNodes = new Set(); + treeSearchQuery = ''; + treeSearchResults = new Set(); + private classSet = new Set(); + private classCountMap = new Map(); + + // Selected class state + selectedClass = ''; + activeTab: 'properties' | 'entries' = 'properties'; + + // Properties state + attributes: SchemaAttribute[] = []; + referrals: SchemaAttribute[] = []; + loadingAttributes = false; + attributesError = false; + showInherited = true; + + // Entries state + entries: SimpleDatabaseObject[] = []; + entryCount = 0; + entriesPage = 1; + entriesPageSize = 50; + loadingEntries = false; + + // Overall + loading = true; + error = false; + sidebarOpen = false; + + constructor( + private contentDataService: ContentDataService, + private route: ActivatedRoute, + private router: Router + ) {} + + ngOnInit() { + this.contentDataService.getSchemaModel().subscribe({ + next: (root) => { + this.treeRoot = root; + // Expand first two levels by default + this.expandedNodes.add(root.className); + if (root.children) { + for (const child of root.children) { + this.expandedNodes.add(child.className); + } + } + this.buildClassIndex(root); + this.rebuildFlatTree(); + this.loading = false; + + // Listen for route changes + this.route.params.pipe(takeUntil(this.destroy$)).subscribe((params) => { + const className = params['className'] || 'DatabaseObject'; + if (className !== this.selectedClass) { + this.selectClass(className); + } + }); + }, + error: () => { + this.error = true; + this.loading = false; + }, + }); + } + + ngOnDestroy() { + this.destroy$.next(); + this.destroy$.complete(); + } + + // --- Tree --- + + private buildClassIndex(node: SchemaNode) { + this.classSet.add(node.className); + this.classCountMap.set(node.className, node.count); + if (node.children) { + for (const child of node.children) { + this.buildClassIndex(child); + } + } + } + + rebuildFlatTree() { + if (!this.treeRoot) return; + this.flatTree = []; + this.buildFlatTreeRecursive(this.treeRoot, 0); + } + + private buildFlatTreeRecursive(node: SchemaNode, depth: number) { + const hasChildren = node.children && node.children.length > 0; + const expanded = this.expandedNodes.has(node.className); + + // If searching, skip nodes that aren't in the search results path + if (this.treeSearchQuery && !this.treeSearchResults.has(node.className)) { + return; + } + + this.flatTree.push({ + className: node.className, + count: node.count, + depth, + hasChildren, + expanded, + }); + + if (hasChildren && expanded) { + const sorted = [...node.children].sort((a, b) => + a.className.localeCompare(b.className) + ); + for (const child of sorted) { + this.buildFlatTreeRecursive(child, depth + 1); + } + } + } + + toggleTreeNode(className: string) { + if (this.expandedNodes.has(className)) { + this.expandedNodes.delete(className); + } else { + this.expandedNodes.add(className); + } + this.rebuildFlatTree(); + } + + onTreeNodeClick(className: string) { + this.router.navigate(['/content/schema', className]); + this.sidebarOpen = false; + } + + onTreeSearch(event: Event) { + const value = (event.target as HTMLInputElement).value; + this.treeSearchQuery = value.toLowerCase().trim(); + if (this.treeSearchQuery) { + this.treeSearchResults.clear(); + this.collectMatchingNodes(this.treeRoot!, this.treeSearchQuery); + } + this.rebuildFlatTree(); + } + + clearTreeSearch() { + this.treeSearchQuery = ''; + this.treeSearchResults.clear(); + this.rebuildFlatTree(); + } + + private collectMatchingNodes(node: SchemaNode, query: string): boolean { + let matches = node.className.toLowerCase().includes(query); + + if (node.children) { + for (const child of node.children) { + if (this.collectMatchingNodes(child, query)) { + matches = true; + } + } + } + + if (matches) { + this.treeSearchResults.add(node.className); + this.expandedNodes.add(node.className); + } + + return matches; + } + + // --- Class selection --- + + selectClass(className: string) { + this.selectedClass = className; + this.activeTab = 'properties'; + this.entries = []; + this.entriesPage = 1; + this.loadAttributes(className); + + // Expand tree path to this node + this.expandPathTo(className); + } + + private expandPathTo(className: string) { + if (!this.treeRoot) return; + this.findAndExpandPath(this.treeRoot, className); + this.rebuildFlatTree(); + } + + private findAndExpandPath(node: SchemaNode, target: string): boolean { + if (node.className === target) return true; + if (node.children) { + for (const child of node.children) { + if (this.findAndExpandPath(child, target)) { + this.expandedNodes.add(node.className); + return true; + } + } + } + return false; + } + + // --- Properties --- + + loadAttributes(className: string) { + this.loadingAttributes = true; + this.attributesError = false; + this.attributes = []; + this.referrals = []; + + this.contentDataService.getSchemaAttributes(className).subscribe({ + next: (attrs) => { + this.attributes = attrs; + this.loadingAttributes = false; + }, + error: () => { + this.attributesError = true; + this.loadingAttributes = false; + }, + }); + + this.contentDataService.getSchemaReferrals(className).subscribe({ + next: (refs) => { + this.referrals = refs; + }, + error: () => { + // Referrals may be empty, that's fine + }, + }); + } + + get ownAttributes(): SchemaAttribute[] { + return this.attributes.filter((a) => a.origin === this.selectedClass); + } + + get inheritedAttributes(): SchemaAttribute[] { + return this.attributes.filter((a) => a.origin !== this.selectedClass); + } + + isClassInTree(className: string): boolean { + return this.classSet.has(className); + } + + navigateToClass(className: string) { + this.router.navigate(['/content/schema', className]); + } + + // --- Entries --- + + switchToEntries() { + this.activeTab = 'entries'; + if (this.entries.length === 0 && this.selectedClass) { + this.loadEntryCount(); + this.loadEntries(); + } + } + + loadEntryCount() { + this.contentDataService.getSchemaCount(this.selectedClass).subscribe({ + next: (count) => { + this.entryCount = count; + }, + }); + } + + loadEntries() { + this.loadingEntries = true; + this.contentDataService + .getSchemaEntries(this.selectedClass, this.entriesPage, this.entriesPageSize) + .subscribe({ + next: (entries) => { + this.entries = entries; + this.loadingEntries = false; + }, + error: () => { + this.entries = []; + this.loadingEntries = false; + }, + }); + } + + get totalPages(): number { + return Math.ceil(this.entryCount / this.entriesPageSize); + } + + goToPage(page: number) { + if (page < 1 || page > this.totalPages) return; + this.entriesPage = page; + this.loadEntries(); + } + + get visiblePages(): number[] { + const total = this.totalPages; + const current = this.entriesPage; + const pages: number[] = []; + + const start = Math.max(1, current - 2); + const end = Math.min(total, current + 2); + + for (let i = start; i <= end; i++) { + pages.push(i); + } + return pages; + } + + getNodeCount(className: string): number { + return this.classCountMap.get(className) || 0; + } + + toggleSidebar() { + this.sidebarOpen = !this.sidebarOpen; + } + + entryUrl(entry: SimpleDatabaseObject): string { + if (entry.stId) { + return `https://dev.reactome.org/content/detail/${entry.stId}`; + } + return `https://dev.reactome.org/content/detail/${entry.dbId}`; + } +} diff --git a/projects/website-angular/src/services/content-data.service.ts b/projects/website-angular/src/services/content-data.service.ts index 0db93f1..e9dc3e2 100644 --- a/projects/website-angular/src/services/content-data.service.ts +++ b/projects/website-angular/src/services/content-data.service.ts @@ -52,12 +52,38 @@ export interface Contributor { reviewedReactions: number; } +export interface SchemaNode { + className: string; + count: number; + children: SchemaNode[]; +} + +export interface SchemaValueType { + name: string; + databaseObject: boolean; +} + +export interface SchemaAttribute { + name: string; + cardinality: string; + valueTypes: SchemaValueType[]; + origin: string; +} + +export interface SimpleDatabaseObject { + dbId: number; + stId: string; + displayName: string; + schemaClass: string; +} + @Injectable({ providedIn: 'root', }) export class ContentDataService { private http = inject(HttpClient); private baseUrl = 'https://dev.reactome.org/ContentService/data/content'; + private schemaUrl = 'https://dev.reactome.org/ContentService/data/schema'; getTocPathways(): Observable { return this.http.get(`${this.baseUrl}/toc`); @@ -70,4 +96,28 @@ export class ContentDataService { getContributors(): Observable { return this.http.get(`${this.baseUrl}/contributors`); } + + getSchemaModel(): Observable { + return this.http.get(`${this.schemaUrl}/model`); + } + + getSchemaAttributes(className: string): Observable { + return this.http.get(`${this.schemaUrl}/${className}/attributes`); + } + + getSchemaReferrals(className: string): Observable { + return this.http.get(`${this.schemaUrl}/${className}/referrals`); + } + + getSchemaEntries(className: string, page: number, offset: number, species?: string): Observable { + let url = `${this.schemaUrl}/${className}/min?page=${page}&offset=${offset}`; + if (species) url += `&species=${encodeURIComponent(species)}`; + return this.http.get(url); + } + + getSchemaCount(className: string, species?: string): Observable { + let url = `${this.schemaUrl}/${className}/count`; + if (species) url += `?species=${encodeURIComponent(species)}`; + return this.http.get(url); + } } From 960818183d735fdf06ed469d447b82eb2287d724 Mon Sep 17 00:00:00 2001 From: Adam Wright Date: Wed, 4 Mar 2026 12:44:17 -0500 Subject: [PATCH 3/3] feat: Add Swagger UI pages for ContentService and AnalysisService Adds /ContentService and /AnalysisService routes that render interactive Swagger UI API documentation, loaded lazily from vendored swagger-ui-dist assets. The servers section is hidden since there is only one server. Co-Authored-By: Claude Opus 4.6 --- package-lock.json | 17 +++++ package.json | 1 + .../website-angular/src/app/app.routes.ts | 4 ++ .../swagger-page/swagger-page.component.html | 1 + .../swagger-page/swagger-page.component.scss | 9 +++ .../swagger-page/swagger-page.component.ts | 69 +++++++++++++++++++ .../assets/swagger-ui/swagger-ui-bundle.js | 2 + .../src/assets/swagger-ui/swagger-ui.css | 3 + 8 files changed, 106 insertions(+) create mode 100644 projects/website-angular/src/app/swagger-page/swagger-page.component.html create mode 100644 projects/website-angular/src/app/swagger-page/swagger-page.component.scss create mode 100644 projects/website-angular/src/app/swagger-page/swagger-page.component.ts create mode 100644 projects/website-angular/src/assets/swagger-ui/swagger-ui-bundle.js create mode 100644 projects/website-angular/src/assets/swagger-ui/swagger-ui.css diff --git a/package-lock.json b/package-lock.json index 76d9153..f392f25 100644 --- a/package-lock.json +++ b/package-lock.json @@ -57,6 +57,7 @@ "rxjs": "~7.8.0", "svg-pan-zoom": "^3.6.1", "svgcanvas": "^2.6.0", + "swagger-ui-dist": "^5.32.0", "tinacms": "^3.4.1", "tslib": "^2.3.0", "vectorious": "^6.1.12", @@ -8156,6 +8157,13 @@ "dev": true, "license": "MIT" }, + "node_modules/@scarf/scarf": { + "version": "1.4.0", + "resolved": "https://registry.npmjs.org/@scarf/scarf/-/scarf-1.4.0.tgz", + "integrity": "sha512-xxeapPiUXdZAE3che6f3xogoJPeZgig6omHEy1rIY5WVsB3H2BHNnZH+gHG6x91SCWyQCzWGsuL2Hh3ClO5/qQ==", + "hasInstallScript": true, + "license": "Apache-2.0" + }, "node_modules/@schematics/angular": { "version": "19.2.19", "resolved": "https://registry.npmjs.org/@schematics/angular/-/angular-19.2.19.tgz", @@ -26867,6 +26875,15 @@ "integrity": "sha512-H/2iVTLyuLxbLNYArnTaR8RmCR7fi8Gx7Hul7+lnPcN/b6AXLS56iVzUudgfMmkKrF9+GvXm+YJlT9Tg4eIj3A==", "license": "MIT" }, + "node_modules/swagger-ui-dist": { + "version": "5.32.0", + "resolved": "https://registry.npmjs.org/swagger-ui-dist/-/swagger-ui-dist-5.32.0.tgz", + "integrity": "sha512-nKZB0OuDvacB0s/lC2gbge+RigYvGRGpLLMWMFxaTUwfM+CfndVk9Th2IaTinqXiz6Mn26GK2zriCpv6/+5m3Q==", + "license": "Apache-2.0", + "dependencies": { + "@scarf/scarf": "=1.4.0" + } + }, "node_modules/swap-case": { "version": "2.0.2", "resolved": "https://registry.npmjs.org/swap-case/-/swap-case-2.0.2.tgz", diff --git a/package.json b/package.json index a1978f9..8b6d356 100644 --- a/package.json +++ b/package.json @@ -70,6 +70,7 @@ "rxjs": "~7.8.0", "svg-pan-zoom": "^3.6.1", "svgcanvas": "^2.6.0", + "swagger-ui-dist": "^5.32.0", "tinacms": "^3.4.1", "tslib": "^2.3.0", "vectorious": "^6.1.12", diff --git a/projects/website-angular/src/app/app.routes.ts b/projects/website-angular/src/app/app.routes.ts index 63425fd..42b5bf2 100644 --- a/projects/website-angular/src/app/app.routes.ts +++ b/projects/website-angular/src/app/app.routes.ts @@ -40,6 +40,10 @@ export const routes: Routes = [ { path: 'content/query', loadComponent: () => import('./search/search.component').then(m => m.SearchComponent) }, { path: 'tools/site-search', loadComponent: () => import('./site-search/site-search.component').then(m => m.SiteSearchComponent) }, + //API Documentation (Swagger UI) + { path: 'ContentService', loadComponent: () => import('./swagger-page/swagger-page.component').then(m => m.SwaggerPageComponent), data: { serviceName: 'ContentService' } }, + { path: 'AnalysisService', loadComponent: () => import('./swagger-page/swagger-page.component').then(m => m.SwaggerPageComponent), data: { serviceName: 'AnalysisService' } }, + //404 Page { path: '404', loadComponent: () => import('./page-not-found/page-not-found.component').then(m => m.PageNotFoundComponent) }, //TODO: Remove? /* Non - CMS Pages Above this Line */ diff --git a/projects/website-angular/src/app/swagger-page/swagger-page.component.html b/projects/website-angular/src/app/swagger-page/swagger-page.component.html new file mode 100644 index 0000000..cc1b8d9 --- /dev/null +++ b/projects/website-angular/src/app/swagger-page/swagger-page.component.html @@ -0,0 +1 @@ +
diff --git a/projects/website-angular/src/app/swagger-page/swagger-page.component.scss b/projects/website-angular/src/app/swagger-page/swagger-page.component.scss new file mode 100644 index 0000000..f3cfb55 --- /dev/null +++ b/projects/website-angular/src/app/swagger-page/swagger-page.component.scss @@ -0,0 +1,9 @@ +.swagger-container { + max-width: 1460px; + margin: 0 auto; + padding: 1rem; +} + +:host ::ng-deep .scheme-container { + display: none; +} diff --git a/projects/website-angular/src/app/swagger-page/swagger-page.component.ts b/projects/website-angular/src/app/swagger-page/swagger-page.component.ts new file mode 100644 index 0000000..0d566f1 --- /dev/null +++ b/projects/website-angular/src/app/swagger-page/swagger-page.component.ts @@ -0,0 +1,69 @@ +import { Component, AfterViewInit, OnDestroy, ElementRef, ViewChild, PLATFORM_ID, Inject } from '@angular/core'; +import { ActivatedRoute } from '@angular/router'; +import { isPlatformBrowser } from '@angular/common'; + +declare const SwaggerUIBundle: any; + +@Component({ + selector: 'app-swagger-page', + templateUrl: './swagger-page.component.html', + styleUrl: './swagger-page.component.scss', +}) +export class SwaggerPageComponent implements AfterViewInit, OnDestroy { + @ViewChild('swaggerContainer', { static: true }) swaggerContainer!: ElementRef; + + private serviceName = ''; + private isBrowser: boolean; + + constructor( + private route: ActivatedRoute, + @Inject(PLATFORM_ID) platformId: Object, + ) { + this.isBrowser = isPlatformBrowser(platformId); + this.serviceName = this.route.snapshot.data['serviceName'] || 'ContentService'; + } + + ngAfterViewInit() { + if (!this.isBrowser) return; + this.loadSwaggerUI(); + } + + private async loadSwaggerUI() { + await this.loadCss('assets/swagger-ui/swagger-ui.css'); + await this.loadScript('assets/swagger-ui/swagger-ui-bundle.js'); + + const url = `https://dev.reactome.org/${this.serviceName}/v3/api-docs`; + SwaggerUIBundle({ + domNode: this.swaggerContainer.nativeElement, + url, + }); + } + + private loadScript(src: string): Promise { + if (document.querySelector(`script[src="${src}"]`)) return Promise.resolve(); + return new Promise((resolve, reject) => { + const script = document.createElement('script'); + script.src = src; + script.onload = () => resolve(); + script.onerror = () => reject(new Error(`Failed to load script: ${src}`)); + document.head.appendChild(script); + }); + } + + private loadCss(href: string): Promise { + if (document.querySelector(`link[href="${href}"]`)) return Promise.resolve(); + return new Promise((resolve) => { + const link = document.createElement('link'); + link.rel = 'stylesheet'; + link.href = href; + link.onload = () => resolve(); + document.head.appendChild(link); + }); + } + + ngOnDestroy() { + if (this.swaggerContainer?.nativeElement) { + this.swaggerContainer.nativeElement.innerHTML = ''; + } + } +} diff --git a/projects/website-angular/src/assets/swagger-ui/swagger-ui-bundle.js b/projects/website-angular/src/assets/swagger-ui/swagger-ui-bundle.js new file mode 100644 index 0000000..f2e7ca5 --- /dev/null +++ b/projects/website-angular/src/assets/swagger-ui/swagger-ui-bundle.js @@ -0,0 +1,2 @@ +/*! 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Received type '+typeof s);if(void 0===o&&(o=0),void 0===i&&(i=s?s.length:0),void 0===a&&(a=0),void 0===u&&(u=this.length),o<0||i>s.length||a<0||u>this.length)throw new RangeError("out of range index");if(a>=u&&o>=i)return 0;if(a>=u)return-1;if(o>=i)return 1;if(this===s)return 0;let _=(u>>>=0)-(a>>>=0),w=(i>>>=0)-(o>>>=0);const x=Math.min(_,w),C=this.slice(a,u),j=s.slice(o,i);for(let s=0;s>>=0,isFinite(i)?(i>>>=0,void 0===a&&(a="utf8")):(a=i,i=void 0)}const u=this.length-o;if((void 0===i||i>u)&&(i=u),s.length>0&&(i<0||o<0)||o>this.length)throw new RangeError("Attempt to write outside buffer bounds");a||(a="utf8");let _=!1;for(;;)switch(a){case"hex":return hexWrite(this,s,o,i);case"utf8":case"utf-8":return utf8Write(this,s,o,i);case"ascii":case"latin1":case"binary":return asciiWrite(this,s,o,i);case"base64":return base64Write(this,s,o,i);case"ucs2":case"ucs-2":case"utf16le":case"utf-16le":return ucs2Write(this,s,o,i);default:if(_)throw new TypeError("Unknown encoding: 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readUInt16LE(s,o){return s>>>=0,o||checkOffset(s,2,this.length),this[s]|this[s+1]<<8},Buffer.prototype.readUint16BE=Buffer.prototype.readUInt16BE=function readUInt16BE(s,o){return s>>>=0,o||checkOffset(s,2,this.length),this[s]<<8|this[s+1]},Buffer.prototype.readUint32LE=Buffer.prototype.readUInt32LE=function readUInt32LE(s,o){return s>>>=0,o||checkOffset(s,4,this.length),(this[s]|this[s+1]<<8|this[s+2]<<16)+16777216*this[s+3]},Buffer.prototype.readUint32BE=Buffer.prototype.readUInt32BE=function readUInt32BE(s,o){return s>>>=0,o||checkOffset(s,4,this.length),16777216*this[s]+(this[s+1]<<16|this[s+2]<<8|this[s+3])},Buffer.prototype.readBigUInt64LE=defineBigIntMethod((function readBigUInt64LE(s){validateNumber(s>>>=0,"offset");const o=this[s],i=this[s+7];void 0!==o&&void 0!==i||boundsError(s,this.length-8);const a=o+256*this[++s]+65536*this[++s]+this[++s]*2**24,u=this[++s]+256*this[++s]+65536*this[++s]+i*2**24;return BigInt(a)+(BigInt(u)<>>=0,"offset");const o=this[s],i=this[s+7];void 0!==o&&void 0!==i||boundsError(s,this.length-8);const a=o*2**24+65536*this[++s]+256*this[++s]+this[++s],u=this[++s]*2**24+65536*this[++s]+256*this[++s]+i;return(BigInt(a)<>>=0,o>>>=0,i||checkOffset(s,o,this.length);let a=this[s],u=1,_=0;for(;++_=u&&(a-=Math.pow(2,8*o)),a},Buffer.prototype.readIntBE=function readIntBE(s,o,i){s>>>=0,o>>>=0,i||checkOffset(s,o,this.length);let a=o,u=1,_=this[s+--a];for(;a>0&&(u*=256);)_+=this[s+--a]*u;return u*=128,_>=u&&(_-=Math.pow(2,8*o)),_},Buffer.prototype.readInt8=function readInt8(s,o){return s>>>=0,o||checkOffset(s,1,this.length),128&this[s]?-1*(255-this[s]+1):this[s]},Buffer.prototype.readInt16LE=function readInt16LE(s,o){s>>>=0,o||checkOffset(s,2,this.length);const i=this[s]|this[s+1]<<8;return 32768&i?4294901760|i:i},Buffer.prototype.readInt16BE=function readInt16BE(s,o){s>>>=0,o||checkOffset(s,2,this.length);const i=this[s+1]|this[s]<<8;return 32768&i?4294901760|i:i},Buffer.prototype.readInt32LE=function readInt32LE(s,o){return s>>>=0,o||checkOffset(s,4,this.length),this[s]|this[s+1]<<8|this[s+2]<<16|this[s+3]<<24},Buffer.prototype.readInt32BE=function readInt32BE(s,o){return s>>>=0,o||checkOffset(s,4,this.length),this[s]<<24|this[s+1]<<16|this[s+2]<<8|this[s+3]},Buffer.prototype.readBigInt64LE=defineBigIntMethod((function readBigInt64LE(s){validateNumber(s>>>=0,"offset");const o=this[s],i=this[s+7];void 0!==o&&void 0!==i||boundsError(s,this.length-8);const a=this[s+4]+256*this[s+5]+65536*this[s+6]+(i<<24);return(BigInt(a)<>>=0,"offset");const o=this[s],i=this[s+7];void 0!==o&&void 0!==i||boundsError(s,this.length-8);const a=(o<<24)+65536*this[++s]+256*this[++s]+this[++s];return(BigInt(a)<>>=0,o||checkOffset(s,4,this.length),u.read(this,s,!0,23,4)},Buffer.prototype.readFloatBE=function readFloatBE(s,o){return s>>>=0,o||checkOffset(s,4,this.length),u.read(this,s,!1,23,4)},Buffer.prototype.readDoubleLE=function readDoubleLE(s,o){return s>>>=0,o||checkOffset(s,8,this.length),u.read(this,s,!0,52,8)},Buffer.prototype.readDoubleBE=function readDoubleBE(s,o){return s>>>=0,o||checkOffset(s,8,this.length),u.read(this,s,!1,52,8)},Buffer.prototype.writeUintLE=Buffer.prototype.writeUIntLE=function writeUIntLE(s,o,i,a){if(s=+s,o>>>=0,i>>>=0,!a){checkInt(this,s,o,i,Math.pow(2,8*i)-1,0)}let u=1,_=0;for(this[o]=255&s;++_>>=0,i>>>=0,!a){checkInt(this,s,o,i,Math.pow(2,8*i)-1,0)}let u=i-1,_=1;for(this[o+u]=255&s;--u>=0&&(_*=256);)this[o+u]=s/_&255;return o+i},Buffer.prototype.writeUint8=Buffer.prototype.writeUInt8=function writeUInt8(s,o,i){return s=+s,o>>>=0,i||checkInt(this,s,o,1,255,0),this[o]=255&s,o+1},Buffer.prototype.writeUint16LE=Buffer.prototype.writeUInt16LE=function writeUInt16LE(s,o,i){return s=+s,o>>>=0,i||checkInt(this,s,o,2,65535,0),this[o]=255&s,this[o+1]=s>>>8,o+2},Buffer.prototype.writeUint16BE=Buffer.prototype.writeUInt16BE=function writeUInt16BE(s,o,i){return s=+s,o>>>=0,i||checkInt(this,s,o,2,65535,0),this[o]=s>>>8,this[o+1]=255&s,o+2},Buffer.prototype.writeUint32LE=Buffer.prototype.writeUInt32LE=function writeUInt32LE(s,o,i){return s=+s,o>>>=0,i||checkInt(this,s,o,4,4294967295,0),this[o+3]=s>>>24,this[o+2]=s>>>16,this[o+1]=s>>>8,this[o]=255&s,o+4},Buffer.prototype.writeUint32BE=Buffer.prototype.writeUInt32BE=function writeUInt32BE(s,o,i){return s=+s,o>>>=0,i||checkInt(this,s,o,4,4294967295,0),this[o]=s>>>24,this[o+1]=s>>>16,this[o+2]=s>>>8,this[o+3]=255&s,o+4},Buffer.prototype.writeBigUInt64LE=defineBigIntMethod((function writeBigUInt64LE(s,o=0){return wrtBigUInt64LE(this,s,o,BigInt(0),BigInt("0xffffffffffffffff"))})),Buffer.prototype.writeBigUInt64BE=defineBigIntMethod((function writeBigUInt64BE(s,o=0){return wrtBigUInt64BE(this,s,o,BigInt(0),BigInt("0xffffffffffffffff"))})),Buffer.prototype.writeIntLE=function writeIntLE(s,o,i,a){if(s=+s,o>>>=0,!a){const a=Math.pow(2,8*i-1);checkInt(this,s,o,i,a-1,-a)}let u=0,_=1,w=0;for(this[o]=255&s;++u>>=0,!a){const a=Math.pow(2,8*i-1);checkInt(this,s,o,i,a-1,-a)}let u=i-1,_=1,w=0;for(this[o+u]=255&s;--u>=0&&(_*=256);)s<0&&0===w&&0!==this[o+u+1]&&(w=1),this[o+u]=(s/_|0)-w&255;return o+i},Buffer.prototype.writeInt8=function writeInt8(s,o,i){return s=+s,o>>>=0,i||checkInt(this,s,o,1,127,-128),s<0&&(s=255+s+1),this[o]=255&s,o+1},Buffer.prototype.writeInt16LE=function writeInt16LE(s,o,i){return s=+s,o>>>=0,i||checkInt(this,s,o,2,32767,-32768),this[o]=255&s,this[o+1]=s>>>8,o+2},Buffer.prototype.writeInt16BE=function writeInt16BE(s,o,i){return s=+s,o>>>=0,i||checkInt(this,s,o,2,32767,-32768),this[o]=s>>>8,this[o+1]=255&s,o+2},Buffer.prototype.writeInt32LE=function writeInt32LE(s,o,i){return s=+s,o>>>=0,i||checkInt(this,s,o,4,2147483647,-2147483648),this[o]=255&s,this[o+1]=s>>>8,this[o+2]=s>>>16,this[o+3]=s>>>24,o+4},Buffer.prototype.writeInt32BE=function writeInt32BE(s,o,i){return 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Buffer");if(i||(i=0),a||0===a||(a=this.length),o>=s.length&&(o=s.length),o||(o=0),a>0&&a=this.length)throw new RangeError("Index out of range");if(a<0)throw new RangeError("sourceEnd out of bounds");a>this.length&&(a=this.length),s.length-o>>=0,i=void 0===i?this.length:i>>>0,s||(s=0),"number"==typeof s)for(u=o;u=a+4;i-=3)o=`_${s.slice(i-3,i)}${o}`;return`${s.slice(0,i)}${o}`}function checkIntBI(s,o,i,a,u,_){if(s>i||s3?0===o||o===BigInt(0)?`>= 0${a} and < 2${a} ** ${8*(_+1)}${a}`:`>= -(2${a} ** ${8*(_+1)-1}${a}) and < 2 ** ${8*(_+1)-1}${a}`:`>= ${o}${a} and <= ${i}${a}`,new C.ERR_OUT_OF_RANGE("value",u,s)}!function checkBounds(s,o,i){validateNumber(o,"offset"),void 0!==s[o]&&void 0!==s[o+i]||boundsError(o,s.length-(i+1))}(a,u,_)}function validateNumber(s,o){if("number"!=typeof s)throw new C.ERR_INVALID_ARG_TYPE(o,"number",s)}function boundsError(s,o,i){if(Math.floor(s)!==s)throw validateNumber(s,i),new C.ERR_OUT_OF_RANGE(i||"offset","an integer",s);if(o<0)throw new C.ERR_BUFFER_OUT_OF_BOUNDS;throw new C.ERR_OUT_OF_RANGE(i||"offset",`>= ${i?1:0} and <= ${o}`,s)}E("ERR_BUFFER_OUT_OF_BOUNDS",(function(s){return s?`${s} is outside of buffer bounds`:"Attempt to access memory outside buffer bounds"}),RangeError),E("ERR_INVALID_ARG_TYPE",(function(s,o){return`The "${s}" argument must be of type number. 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OwnerID,u=s._origin,_=s._capacity,x=u+o,j=void 0===i?_:i<0?_+i:u+i;if(x===u&&j===_)return s;if(x>=j)return s.clear();for(var L=s._level,B=s._root,$=0;x+$<0;)B=new VNode(B&&B.array.length?[void 0,B]:[],a),$+=1<<(L+=w);$&&(x+=$,u+=$,j+=$,_+=$);for(var U=getTailOffset(_),V=getTailOffset(j);V>=1<U?new VNode([],a):z;if(z&&V>U&&x<_&&z.array.length){for(var Z=B=editableVNode(B,a),ee=L;ee>w;ee-=w){var ie=U>>>ee&C;Z=Z.array[ie]=editableVNode(Z.array[ie],a)}Z.array[U>>>w&C]=z}if(j<_&&(Y=Y&&Y.removeAfter(a,0,j)),x>=V)x-=V,j-=V,L=w,B=null,Y=Y&&Y.removeBefore(a,0,x);else if(x>u||V>>L&C;if(ae!==V>>>L&C)break;ae&&($+=(1<u&&(B=B.removeBefore(a,L,x-$)),B&&Vu&&(u=x.size),isIterable(w)||(x=x.map((function(s){return fromJS(s)}))),a.push(x)}return u>s.size&&(s=s.setSize(u)),mergeIntoCollectionWith(s,o,a)}function getTailOffset(s){return s>>w<=x&&w.size>=2*_.size?(a=(u=w.filter((function(s,o){return void 0!==s&&C!==o}))).toKeyedSeq().map((function(s){return s[0]})).flip().toMap(),s.__ownerID&&(a.__ownerID=u.__ownerID=s.__ownerID)):(a=_.remove(o),u=C===w.size-1?w.pop():w.set(C,void 0))}else if(L){if(i===w.get(C)[1])return s;a=_,u=w.set(C,[o,i])}else a=_.set(o,w.size),u=w.set(w.size,[o,i]);return s.__ownerID?(s.size=a.size,s._map=a,s._list=u,s.__hash=void 0,s):makeOrderedMap(a,u)}function ToKeyedSequence(s,o){this._iter=s,this._useKeys=o,this.size=s.size}function ToIndexedSequence(s){this._iter=s,this.size=s.size}function ToSetSequence(s){this._iter=s,this.size=s.size}function FromEntriesSequence(s){this._iter=s,this.size=s.size}function flipFactory(s){var o=makeSequence(s);return o._iter=s,o.size=s.size,o.flip=function(){return s},o.reverse=function(){var o=s.reverse.apply(this);return o.flip=function(){return s.reverse()},o},o.has=function(o){return s.includes(o)},o.includes=function(o){return s.has(o)},o.cacheResult=cacheResultThrough,o.__iterateUncached=function(o,i){var a=this;return s.__iterate((function(s,i){return!1!==o(i,s,a)}),i)},o.__iteratorUncached=function(o,i){if(o===V){var a=s.__iterator(o,i);return new Iterator((function(){var s=a.next();if(!s.done){var o=s.value[0];s.value[0]=s.value[1],s.value[1]=o}return s}))}return s.__iterator(o===U?$:U,i)},o}function mapFactory(s,o,i){var a=makeSequence(s);return a.size=s.size,a.has=function(o){return s.has(o)},a.get=function(a,u){var _=s.get(a,j);return _===j?u:o.call(i,_,a,s)},a.__iterateUncached=function(a,u){var _=this;return s.__iterate((function(s,u,w){return!1!==a(o.call(i,s,u,w),u,_)}),u)},a.__iteratorUncached=function(a,u){var _=s.__iterator(V,u);return new Iterator((function(){var u=_.next();if(u.done)return u;var w=u.value,x=w[0];return iteratorValue(a,x,o.call(i,w[1],x,s),u)}))},a}function reverseFactory(s,o){var i=makeSequence(s);return i._iter=s,i.size=s.size,i.reverse=function(){return s},s.flip&&(i.flip=function(){var o=flipFactory(s);return o.reverse=function(){return s.flip()},o}),i.get=function(i,a){return s.get(o?i:-1-i,a)},i.has=function(i){return s.has(o?i:-1-i)},i.includes=function(o){return s.includes(o)},i.cacheResult=cacheResultThrough,i.__iterate=function(o,i){var a=this;return s.__iterate((function(s,i){return o(s,i,a)}),!i)},i.__iterator=function(o,i){return s.__iterator(o,!i)},i}function filterFactory(s,o,i,a){var u=makeSequence(s);return a&&(u.has=function(a){var u=s.get(a,j);return u!==j&&!!o.call(i,u,a,s)},u.get=function(a,u){var _=s.get(a,j);return _!==j&&o.call(i,_,a,s)?_:u}),u.__iterateUncached=function(u,_){var w=this,x=0;return s.__iterate((function(s,_,C){if(o.call(i,s,_,C))return x++,u(s,a?_:x-1,w)}),_),x},u.__iteratorUncached=function(u,_){var w=s.__iterator(V,_),x=0;return new Iterator((function(){for(;;){var _=w.next();if(_.done)return _;var C=_.value,j=C[0],L=C[1];if(o.call(i,L,j,s))return iteratorValue(u,a?j:x++,L,_)}}))},u}function countByFactory(s,o,i){var a=Map().asMutable();return s.__iterate((function(u,_){a.update(o.call(i,u,_,s),0,(function(s){return s+1}))})),a.asImmutable()}function groupByFactory(s,o,i){var a=isKeyed(s),u=(isOrdered(s)?OrderedMap():Map()).asMutable();s.__iterate((function(_,w){u.update(o.call(i,_,w,s),(function(s){return(s=s||[]).push(a?[w,_]:_),s}))}));var _=iterableClass(s);return u.map((function(o){return reify(s,_(o))}))}function sliceFactory(s,o,i,a){var u=s.size;if(void 0!==o&&(o|=0),void 0!==i&&(i===1/0?i=u:i|=0),wholeSlice(o,i,u))return s;var _=resolveBegin(o,u),w=resolveEnd(i,u);if(_!=_||w!=w)return sliceFactory(s.toSeq().cacheResult(),o,i,a);var x,C=w-_;C==C&&(x=C<0?0:C);var j=makeSequence(s);return j.size=0===x?x:s.size&&x||void 0,!a&&isSeq(s)&&x>=0&&(j.get=function(o,i){return(o=wrapIndex(this,o))>=0&&ox)return iteratorDone();var s=u.next();return a||o===U?s:iteratorValue(o,C-1,o===$?void 0:s.value[1],s)}))},j}function takeWhileFactory(s,o,i){var a=makeSequence(s);return a.__iterateUncached=function(a,u){var _=this;if(u)return this.cacheResult().__iterate(a,u);var w=0;return s.__iterate((function(s,u,x){return o.call(i,s,u,x)&&++w&&a(s,u,_)})),w},a.__iteratorUncached=function(a,u){var _=this;if(u)return this.cacheResult().__iterator(a,u);var w=s.__iterator(V,u),x=!0;return new Iterator((function(){if(!x)return iteratorDone();var s=w.next();if(s.done)return s;var u=s.value,C=u[0],j=u[1];return o.call(i,j,C,_)?a===V?s:iteratorValue(a,C,j,s):(x=!1,iteratorDone())}))},a}function skipWhileFactory(s,o,i,a){var u=makeSequence(s);return u.__iterateUncached=function(u,_){var w=this;if(_)return this.cacheResult().__iterate(u,_);var x=!0,C=0;return s.__iterate((function(s,_,j){if(!x||!(x=o.call(i,s,_,j)))return C++,u(s,a?_:C-1,w)})),C},u.__iteratorUncached=function(u,_){var w=this;if(_)return this.cacheResult().__iterator(u,_);var x=s.__iterator(V,_),C=!0,j=0;return new Iterator((function(){var s,_,L;do{if((s=x.next()).done)return a||u===U?s:iteratorValue(u,j++,u===$?void 0:s.value[1],s);var B=s.value;_=B[0],L=B[1],C&&(C=o.call(i,L,_,w))}while(C);return u===V?s:iteratorValue(u,_,L,s)}))},u}function concatFactory(s,o){var i=isKeyed(s),a=[s].concat(o).map((function(s){return isIterable(s)?i&&(s=KeyedIterable(s)):s=i?keyedSeqFromValue(s):indexedSeqFromValue(Array.isArray(s)?s:[s]),s})).filter((function(s){return 0!==s.size}));if(0===a.length)return s;if(1===a.length){var u=a[0];if(u===s||i&&isKeyed(u)||isIndexed(s)&&isIndexed(u))return u}var _=new ArraySeq(a);return i?_=_.toKeyedSeq():isIndexed(s)||(_=_.toSetSeq()),(_=_.flatten(!0)).size=a.reduce((function(s,o){if(void 0!==s){var i=o.size;if(void 0!==i)return s+i}}),0),_}function flattenFactory(s,o,i){var a=makeSequence(s);return a.__iterateUncached=function(a,u){var _=0,w=!1;function flatDeep(s,x){var C=this;s.__iterate((function(s,u){return(!o||x0}function zipWithFactory(s,o,i){var a=makeSequence(s);return a.size=new ArraySeq(i).map((function(s){return s.size})).min(),a.__iterate=function(s,o){for(var i,a=this.__iterator(U,o),u=0;!(i=a.next()).done&&!1!==s(i.value,u++,this););return u},a.__iteratorUncached=function(s,a){var u=i.map((function(s){return s=Iterable(s),getIterator(a?s.reverse():s)})),_=0,w=!1;return new Iterator((function(){var i;return w||(i=u.map((function(s){return s.next()})),w=i.some((function(s){return s.done}))),w?iteratorDone():iteratorValue(s,_++,o.apply(null,i.map((function(s){return s.value}))))}))},a}function reify(s,o){return isSeq(s)?o:s.constructor(o)}function validateEntry(s){if(s!==Object(s))throw new TypeError("Expected [K, V] tuple: "+s)}function resolveSize(s){return assertNotInfinite(s.size),ensureSize(s)}function iterableClass(s){return isKeyed(s)?KeyedIterable:isIndexed(s)?IndexedIterable:SetIterable}function makeSequence(s){return Object.create((isKeyed(s)?KeyedSeq:isIndexed(s)?IndexedSeq:SetSeq).prototype)}function cacheResultThrough(){return this._iter.cacheResult?(this._iter.cacheResult(),this.size=this._iter.size,this):Seq.prototype.cacheResult.call(this)}function defaultComparator(s,o){return s>o?1:s=0;i--)o={value:arguments[i],next:o};return this.__ownerID?(this.size=s,this._head=o,this.__hash=void 0,this.__altered=!0,this):makeStack(s,o)},Stack.prototype.pushAll=function(s){if(0===(s=IndexedIterable(s)).size)return this;assertNotInfinite(s.size);var o=this.size,i=this._head;return s.reverse().forEach((function(s){o++,i={value:s,next:i}})),this.__ownerID?(this.size=o,this._head=i,this.__hash=void 0,this.__altered=!0,this):makeStack(o,i)},Stack.prototype.pop=function(){return this.slice(1)},Stack.prototype.unshift=function(){return this.push.apply(this,arguments)},Stack.prototype.unshiftAll=function(s){return this.pushAll(s)},Stack.prototype.shift=function(){return this.pop.apply(this,arguments)},Stack.prototype.clear=function(){return 0===this.size?this:this.__ownerID?(this.size=0,this._head=void 0,this.__hash=void 0,this.__altered=!0,this):emptyStack()},Stack.prototype.slice=function(s,o){if(wholeSlice(s,o,this.size))return this;var i=resolveBegin(s,this.size);if(resolveEnd(o,this.size)!==this.size)return IndexedCollection.prototype.slice.call(this,s,o);for(var a=this.size-i,u=this._head;i--;)u=u.next;return this.__ownerID?(this.size=a,this._head=u,this.__hash=void 0,this.__altered=!0,this):makeStack(a,u)},Stack.prototype.__ensureOwner=function(s){return s===this.__ownerID?this:s?makeStack(this.size,this._head,s,this.__hash):(this.__ownerID=s,this.__altered=!1,this)},Stack.prototype.__iterate=function(s,o){if(o)return this.reverse().__iterate(s);for(var i=0,a=this._head;a&&!1!==s(a.value,i++,this);)a=a.next;return i},Stack.prototype.__iterator=function(s,o){if(o)return this.reverse().__iterator(s);var i=0,a=this._head;return new Iterator((function(){if(a){var o=a.value;return a=a.next,iteratorValue(s,i++,o)}return iteratorDone()}))},Stack.isStack=isStack;var at,ct="@@__IMMUTABLE_STACK__@@",lt=Stack.prototype;function makeStack(s,o,i,a){var u=Object.create(lt);return u.size=s,u._head=o,u.__ownerID=i,u.__hash=a,u.__altered=!1,u}function emptyStack(){return at||(at=makeStack(0))}function mixin(s,o){var keyCopier=function(i){s.prototype[i]=o[i]};return Object.keys(o).forEach(keyCopier),Object.getOwnPropertySymbols&&Object.getOwnPropertySymbols(o).forEach(keyCopier),s}lt[ct]=!0,lt.withMutations=$e.withMutations,lt.asMutable=$e.asMutable,lt.asImmutable=$e.asImmutable,lt.wasAltered=$e.wasAltered,Iterable.Iterator=Iterator,mixin(Iterable,{toArray:function(){assertNotInfinite(this.size);var s=new Array(this.size||0);return this.valueSeq().__iterate((function(o,i){s[i]=o})),s},toIndexedSeq:function(){return new ToIndexedSequence(this)},toJS:function(){return this.toSeq().map((function(s){return s&&"function"==typeof s.toJS?s.toJS():s})).__toJS()},toJSON:function(){return this.toSeq().map((function(s){return s&&"function"==typeof s.toJSON?s.toJSON():s})).__toJS()},toKeyedSeq:function(){return new ToKeyedSequence(this,!0)},toMap:function(){return Map(this.toKeyedSeq())},toObject:function(){assertNotInfinite(this.size);var s={};return this.__iterate((function(o,i){s[i]=o})),s},toOrderedMap:function(){return OrderedMap(this.toKeyedSeq())},toOrderedSet:function(){return OrderedSet(isKeyed(this)?this.valueSeq():this)},toSet:function(){return Set(isKeyed(this)?this.valueSeq():this)},toSetSeq:function(){return new ToSetSequence(this)},toSeq:function(){return isIndexed(this)?this.toIndexedSeq():isKeyed(this)?this.toKeyedSeq():this.toSetSeq()},toStack:function(){return Stack(isKeyed(this)?this.valueSeq():this)},toList:function(){return List(isKeyed(this)?this.valueSeq():this)},toString:function(){return"[Iterable]"},__toString:function(s,o){return 0===this.size?s+o:s+" "+this.toSeq().map(this.__toStringMapper).join(", ")+" "+o},concat:function(){return 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a=this.toKeyedSeq().reverse();return a.reduce.apply(a,arguments)},reverse:function(){return reify(this,reverseFactory(this,!0))},slice:function(s,o){return reify(this,sliceFactory(this,s,o,!0))},some:function(s,o){return!this.every(not(s),o)},sort:function(s){return reify(this,sortFactory(this,s))},values:function(){return this.__iterator(U)},butLast:function(){return this.slice(0,-1)},isEmpty:function(){return void 0!==this.size?0===this.size:!this.some((function(){return!0}))},count:function(s,o){return ensureSize(s?this.toSeq().filter(s,o):this)},countBy:function(s,o){return countByFactory(this,s,o)},equals:function(s){return deepEqual(this,s)},entrySeq:function(){var s=this;if(s._cache)return new ArraySeq(s._cache);var o=s.toSeq().map(entryMapper).toIndexedSeq();return o.fromEntrySeq=function(){return s.toSeq()},o},filterNot:function(s,o){return this.filter(not(s),o)},findEntry:function(s,o,i){var a=i;return this.__iterate((function(i,u,_){if(s.call(o,i,u,_))return 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