Update ConceptMaps (#138)

KazeemHamzat · web-flow · commit 5369a2281b78 · 2024-09-24T09:19:28.000+01:00
Add the url for version 1.04 of the MDS (https://future.nhs.uk/NHSgenomics/view?objectId=222250117) to ConceptMap.group.source for all ConceptMaps within the genomics package
diff --git a/ConceptMap/ConceptMap-Genomics-condition-laterality-of-hearingloss.json b/ConceptMap/ConceptMap-Genomics-condition-laterality-of-hearingloss.json
@@ -25,6 +25,7 @@
   "targetUri": "http://snomed.info/sct?fhir_vs=ecl/%3C%3C%2015188001%20",
   "group": [
     {
+      "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
       "target": "http://snomed.info/sct",
       "element": [
         {
diff --git a/ConceptMap/ConceptMap-Genomics-condition-liquidtumourtype.json b/ConceptMap/ConceptMap-Genomics-condition-liquidtumourtype.json
@@ -24,6 +24,7 @@
   "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
   "group": [
     {
+      "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
       "target": "http://snomed.info/sct",
       "element": [
         {
diff --git a/ConceptMap/ConceptMap-Genomics-condition-pancreatictumourtype.json b/ConceptMap/ConceptMap-Genomics-condition-pancreatictumourtype.json
@@ -24,6 +24,7 @@
   "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
   "group": [
     {
+      "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
       "target": "http://snomed.info/sct",
       "element": [
         {
diff --git a/ConceptMap/ConceptMap-Genomics-condition-pituitarytumourtype.json b/ConceptMap/ConceptMap-Genomics-condition-pituitarytumourtype.json
@@ -24,6 +24,7 @@
   "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
   "group": [
     {
+      "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
       "target": "http://snomed.info/sct",
       "element": [
         {
diff --git a/ConceptMap/ConceptMap-Genomics-condition-solidtumourtype.json b/ConceptMap/ConceptMap-Genomics-condition-solidtumourtype.json
@@ -24,6 +24,7 @@
   "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
   "group": [
     {
+      "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
       "target": "http://snomed.info/sct",
       "element": [
         {
diff --git a/ConceptMap/ConceptMap-Genomics-disease-status.json b/ConceptMap/ConceptMap-Genomics-disease-status.json
@@ -25,6 +25,7 @@
   "targetUri": "http://terminology.hl7.org/ValueSet/condition-clinical",
   "group": [
     {
+      "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
       "target": "http://terminology.hl7.org/CodeSystem/condition-clinical",
       "element": [
         {
@@ -56,10 +57,8 @@
           "display": "Unknown",
           "target": [
             {
-              
-                "equivalence": "unmatched",
-                "comment":"When disease status is unknown, clinical status should be omitted from the Condition resource."
-              
+              "equivalence": "unmatched",
+              "comment": "When disease status is unknown, clinical status should be omitted from the Condition resource."
             }
           ]
         }
diff --git a/ConceptMap/ConceptMap-Genomics-fetal-maternal-screening-genotype.json b/ConceptMap/ConceptMap-Genomics-fetal-maternal-screening-genotype.json
@@ -25,6 +25,7 @@
   "targetUri": "http://snomed.info/sct",
   "group": [
     {
+      "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
       "target": "http://snomed.info/sct",
       "element": [
         {
diff --git a/ConceptMap/ConceptMap-Genomics-patient-bornstatus.json b/ConceptMap/ConceptMap-Genomics-patient-bornstatus.json
@@ -22,9 +22,10 @@
   "description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
   "purpose": "ConceptMap used for the translation and recording of concept to indicate if the patient is a fetal. This is intended for the element Patient.extension:fetalStatus",
   "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
- "targetUri": "http://hl7.org/fhir/ValueSet/patient-fetalstatus",
+  "targetUri": "http://hl7.org/fhir/ValueSet/patient-fetalstatus",
   "group": [
     {
+      "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
       "target": "http://hl7.org/fhir/patient-fetalstatus",
       "element": [
         {
@@ -44,7 +45,7 @@
           "target": [
             {
               "equivalence": "unmatched",
-              "comment":"No suitable SNOMDED CT code is found. This should be captured by recording the birthDate on the Patient resource (Patient.birthDate)."
+              "comment": "No suitable SNOMDED CT code is found. This should be captured by recording the birthDate on the Patient resource (Patient.birthDate)."
             }
           ]
         }
diff --git a/ConceptMap/ConceptMap-Genomics-patient-foetusobservedsex.json b/ConceptMap/ConceptMap-Genomics-patient-foetusobservedsex.json
@@ -25,6 +25,7 @@
   "targetUri": "http://hl7.org/fhir/ValueSet/administrative-gender",
   "group": [
     {
+      "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
       "target": "http://hl7.org/fhir/administrative-gender",
       "element": [
         {
diff --git a/ConceptMap/ConceptMap-Genomics-patientbirthsex.json b/ConceptMap/ConceptMap-Genomics-patientbirthsex.json
@@ -25,6 +25,7 @@
   "targetUri": "https://fhir.hl7.org.uk/ValueSet/UKCore-BirthSex",
   "group": [
     {
+      "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
       "target": "http://terminology.hl7.org/CodeSystem/v3-AdministrativeGender",
       "element": [
         {
diff --git a/ConceptMap/ConceptMap-Genomics-patientpregnancytype.json b/ConceptMap/ConceptMap-Genomics-patientpregnancytype.json
@@ -25,6 +25,7 @@
   "targetUri": "http://snomed.info/sct?fhir_vs=isa/138875005",
   "group": [
     {
+      "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
       "target": "http://snomed.info/sct",
       "element": [
         {
diff --git a/ConceptMap/ConceptMap-Genomics-probandrelationshiptype.json b/ConceptMap/ConceptMap-Genomics-probandrelationshiptype.json
@@ -25,6 +25,7 @@
   "targetUri": "http://hl7.org/fhir/ValueSet/relatedperson-relationshiptype",
   "group": [
     {
+      "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
       "target": "http://terminology.hl7.org/CodeSystem/v3-RoleCode",
       "element": [
         {
diff --git a/ConceptMap/ConceptMap-Genomics-procedure-transfusiontype.json b/ConceptMap/ConceptMap-Genomics-procedure-transfusiontype.json
@@ -25,6 +25,7 @@
   "targetUri": "http://snomed.info/sct?fhir_vs=ecl/%3C%3C%205447007%20",
   "group": [
     {
+      "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
       "target": "http://snomed.info/sct",
       "element": [
         {
diff --git a/ConceptMap/ConceptMap-Genomics-reportdeliverymethod.json b/ConceptMap/ConceptMap-Genomics-reportdeliverymethod.json
@@ -25,6 +25,8 @@
   "targetUri": "http://hl7.org/fhir/ValueSet/contact-point-system",
   "group": [
     {
+      "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
+      "target": "http://hl7.org/fhir/contact-point-system",
       "element": [
         {
           "code": "postal",
diff --git a/ConceptMap/ConceptMap-Genomics-risk-reason-for-specimen-specialhandling.json b/ConceptMap/ConceptMap-Genomics-risk-reason-for-specimen-specialhandling.json
@@ -25,6 +25,7 @@
   "targetUri": "http://snomed.info/sct",
   "group": [
     {
+      "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
       "target": "http://snomed.info/sct",
       "element": [
         {
diff --git a/ConceptMap/ConceptMap-Genomics-specimen-final-sample.json b/ConceptMap/ConceptMap-Genomics-specimen-final-sample.json
@@ -24,6 +24,7 @@
   "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
   "group": [
     {
+      "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
       "target": "http://snomed.info/sct",
       "element": [
         {
diff --git a/ConceptMap/ConceptMap-Genomics-specimen-primarysample.json b/ConceptMap/ConceptMap-Genomics-specimen-primarysample.json
@@ -25,6 +25,7 @@
   "targetUri": "http://snomed.info/sct?fhir_vs=ecl/%3C%3C%20123038009%20",
   "group": [
     {
+      "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
       "target": "http://snomed.info/sct",
       "element": [
         {
diff --git a/ConceptMap/ConceptMap-Genomics-specimen-samplepreparation.json b/ConceptMap/ConceptMap-Genomics-specimen-samplepreparation.json
@@ -25,6 +25,7 @@
   "targetUri": "http://snomed.info/sct?fhir_vs=ecl/%3C%3C%2071388002%20",
   "group": [
     {
+      "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
       "target": "http://snomed.info/sct",
       "element": [
         {
diff --git a/ConceptMap/ConceptMap-Genomics-specimen-tumourcellularity.json b/ConceptMap/ConceptMap-Genomics-specimen-tumourcellularity.json
@@ -25,6 +25,7 @@
   "targetUri": "http://snomed.info/sct?fhir_vs=ecl/%3C!%20362981000%20",
   "group": [
     {
+      "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
       "target": "http://snomed.info/sct",
       "element": [
         {
diff --git a/ConceptMap/ConceptMap-Genomics-testrequestpriority.json b/ConceptMap/ConceptMap-Genomics-testrequestpriority.json
@@ -25,6 +25,7 @@
   "targetUri": "http://hl7.org/fhir/ValueSet/request-priority",
   "group": [
     {
+      "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
       "target": "http://hl7.org/fhir/request-priority",
       "element": [
         {
diff --git a/ConceptMap/ConceptMap-Genomics-typeof-transplantprocedure.json b/ConceptMap/ConceptMap-Genomics-typeof-transplantprocedure.json
@@ -24,6 +24,7 @@
   "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
   "group": [
     {
+      "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
       "target": "http://snomed.info/sct",
       "element": [
         {

Original file line number	Diff line number	Diff line change
`@@ -25,6 +25,7 @@`
`25`	`25`	`"targetUri": "http://snomed.info/sct?fhir_vs=ecl/%3C%3C%2015188001%20",`
`26`	`26`	`"group": [`
`27`	`27`	`{`
	`28`	`+ "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",`
`28`	`29`	`"target": "http://snomed.info/sct",`
`29`	`30`	`"element": [`
`30`	`31`	`{`
Original file line number	Diff line number	Diff line change
`@@ -24,6 +24,7 @@`
`24`	`24`	"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
`25`	`25`	`"group": [`
`26`	`26`	`{`
	`27`	`+ "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",`
`27`	`28`	`"target": "http://snomed.info/sct",`
`28`	`29`	`"element": [`
`29`	`30`	`{`
Original file line number	Diff line number	Diff line change
`@@ -22,9 +22,10 @@`
`22`	`22`	`"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",`
`23`	`23`	`"purpose": "ConceptMap used for the translation and recording of concept to indicate if the patient is a fetal. This is intended for the element Patient.extension:fetalStatus",`
`24`	`24`	"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
`25`		`- "targetUri": "http://hl7.org/fhir/ValueSet/patient-fetalstatus",`
	`25`	`+ "targetUri": "http://hl7.org/fhir/ValueSet/patient-fetalstatus",`
`26`	`26`	`"group": [`
`27`	`27`	`{`
	`28`	`+ "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",`
`28`	`29`	`"target": "http://hl7.org/fhir/patient-fetalstatus",`
`29`	`30`	`"element": [`
`30`	`31`	`{`
`@@ -44,7 +45,7 @@`
`44`	`45`	`"target": [`
`45`	`46`	`{`
`46`	`47`	`"equivalence": "unmatched",`
`47`		`- "comment":"No suitable SNOMDED CT code is found. This should be captured by recording the birthDate on the Patient resource (Patient.birthDate)."`
	`48`	`+ "comment": "No suitable SNOMDED CT code is found. This should be captured by recording the birthDate on the Patient resource (Patient.birthDate)."`
`48`	`49`	`}`
`49`	`50`	`]`
`50`	`51`	`}`