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KevinMayfieldKevinMayfield
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Merge pull request #6 from NHSDigital/Feature-Workflow-Resources
Feature workflow resources
2 parents 8d29ada + f39e036 commit 11a29f7

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‎.gitignore‎

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IOPS-validation
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validation-service-fhir-r4
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.idea/workspace.xml
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NHSDigital-DiagnosticReport-Genomics-International.StructureDefinition.json

‎Bundle/UKCore-Bundle-MichaelJonesRequest-Example_minimal.json‎

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{
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"resourceType": "Bundle",
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"id": "UKCore-Bundle-MichaelJonesRequest-Example-Minimal",
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"identifier": {
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"system": "https://tools.ietf.org/html/rfc4122",
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"value": "30d65c8e-98e8-4806-b6a6-51e94733f0e9"
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},
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"type": "message",
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"timestamp": "2022-07-11T09:00:00Z",
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"entry": [
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{
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"fullUrl": "urn:uuid:a4409d7c-b613-477c-b623-87e60406c2f0",
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"resource": {
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"resourceType": "MessageHeader",
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"id": "a4409d7c-b613-477c-b623-87e60406c2f0",
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"eventCoding": {
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"system": "https://fhir.nhs.uk/CodeSystem/message-events-genomics",
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"code": "genomictestrequest",
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"display": "Genomic Test Request"
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},
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"source": {
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"endpoint": "https://www.christie.nhs.uk/ehr"
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},
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"focus": [
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{
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"reference": "urn:uuid:66c519dd-423f-4238-89c8-91c5be52f330"
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}
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]
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}
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},
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{
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"fullUrl": "urn:uuid:41e4b604-37f3-4799-a6b3-ab5b104f3c97",
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"resource": {
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"resourceType": "Patient",
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"id": "41e4b604-37f3-4799-a6b3-ab5b104f3c97",
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"extension": [
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{
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"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-BirthSex",
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"valueCode": "M"
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},
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{
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"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-EthnicCategory",
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"valueCodeableConcept": {
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"coding": [
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{
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"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-EthnicCategoryEngland",
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"code": "A",
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"display": "White - British"
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}
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]
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}
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},
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{
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"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-ResidentialStatus",
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"valueCodeableConcept": {
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"coding": [
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{
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"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-ResidentialStatus",
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"code": "H",
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"display": "UK Resident"
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}
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]
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}
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}
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],
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"identifier": [
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{
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "9999999999"
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}
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],
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"name": [
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{
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"family": "Jones",
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"given": [
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"Michael"
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]
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}
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],
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"gender": "male",
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"birthDate": "1989-12-08",
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"address": [
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{
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"line": [
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"48 Astoria Drive"
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],
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"city": "Coventry",
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"postalCode": "CV4 9ZY"
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}
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]
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}
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},
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{
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"fullUrl": "urn:uuid:66c519dd-423f-4238-89c8-91c5be52f330",
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"resource": {
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"resourceType": "ServiceRequest",
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"id": "66c519dd-423f-4238-89c8-91c5be52f330",
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"extension": [
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{
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"url": "https://fhir.nhs.uk/StructureDefinition/Extension-Genomics-Coverage",
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"valueCoding": {
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"system": "https://fhir.nhs.uk/CodeSystem/coverage-genomics",
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"code": "NHS",
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"display": "NHS"
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}
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}
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],
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"identifier": [
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{
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"system": "https://www.christie.nhs.uk/ehr",
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"value": "LabOrder123456"
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}
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],
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"status": "active",
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"intent": "order",
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"category": [
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{
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "405824009",
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"display": "Genetic test"
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}
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]
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}
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],
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"priority": "routine",
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"code": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "63491000000109",
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"display": "Paediatric IDH-wildtype glioblastoma tumour and germline WGS (whole genome sequencing)"
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}
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]
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},
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"subject": {
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"reference": "urn:uuid:41e4b604-37f3-4799-a6b3-ab5b104f3c97"
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},
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"authoredOn": "2022-07-11T09:00:00Z",
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"requester": {
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"reference": "urn:uuid:3462583a-536c-4bad-99d3-44dc553921fd"
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},
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"reasonCode": [
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{
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "363418001",
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"display": "Malignant tumor of pancreas (disorder)"
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}
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]
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}
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]
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}
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},
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{
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"fullUrl": "urn:uuid:3462583a-536c-4bad-99d3-44dc553921fd",
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"resource": {
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"resourceType": "PractitionerRole",
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"id": "3462583a-536c-4bad-99d3-44dc553921fd",
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"identifier": [
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{
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"system": "https://fhir.nhs.uk/Id/sds-role-profile-id",
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"value": "100102238986"
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}
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],
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"practitioner": {
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"identifier": {
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"system": "https://fhir.hl7.org.uk/Id/gmc-number",
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"value": "C9999999"
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},
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"display": "Lucy Hale"
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},
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"organization": {
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/ods-organization-code",
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"value": "RBV"
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},
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"display": "NHS Trust - THE CHRISTIE NHS FOUNDATION TRUST"
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},
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"telecom" : [
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{
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"system": "email",
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"value": "lucy.hale@nhs.net"
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},
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{
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"system": "phone",
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"value": "02476151602"
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}
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]
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}
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}
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]
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}

‎Bundle/UKCore-Bundle-MichaelJonesRequest-Example_v3_message.json‎

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"valueCodeableConcept": {
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"coding": [
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{
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"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-NHSNumberVerificationStatus",
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"code": "number-present-and-verified",
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"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-NHSNumberVerificationStatusEngland",
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"code": "01",
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"display": "Number present and verified"
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}
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]

‎CapabilityStatement/CapabilityStatement-genomics-requirements.json‎

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},
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{
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"type": "Task",
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"profile": "https://fhir.hl7.org.uk/StructureDefinition/UKCore-Task"
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"profile": "https://fhir.nhs.uk/StructureDefinition/NHSDigital-Task-Genomics"
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},
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{
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"type": "ServiceRequest",
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},
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{
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"type": "DiagnosticReport",
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"profile": "https://fhir.hl7.org.uk/StructureDefinition/UKCore-DiagnosticReport"
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"profile": "https://fhir.nhs.uk/StructureDefinition/NHSDigital-DiagnosticReport-Genomics"
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},
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{
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"type": "FamilyMemberHistory",

‎CodeSystem/CodeSystem-Genomics-business-status.json‎

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"concept": [
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{
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"code": "AwaitingSpecimen",
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"display": "AwaitingSpecimen"
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"display": "Awaiting Specimen"
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},
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{
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"code": "SpecimenReceived",

‎Condition/UKCore-Condition-PancreaticCancer-Example.json‎

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{
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"resourceType": "Condition",
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"id": "UKCore-Condition-PancreaticCancer-Example",
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"clinicalStatus": {
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"coding": [
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{
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"system": "http://terminology.hl7.org/CodeSystem/condition-clinical",
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"code": "active",
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"display": "Active"
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}
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]
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},
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"verificationStatus": {
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"coding": [
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{
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"system": "http://terminology.hl7.org/CodeSystem/condition-ver-status",
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"code": "confirmed",
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"display": "Confirmed"
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}
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]
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},
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"code": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "363418001",
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"display": "Malignant tumour of pancreas"
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}
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]
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},
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"subject": {
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "9999999999"
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}
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},
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"recordedDate": "2022-07-11T09:00:00Z"
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}

‎Consent/UKCore-Consent-MichaelJonesConsent-Example-minimal.json‎

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{
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"resourceType": "Consent",
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"id": "UKCore-Consent-MichaelJonesConsent-Example-Minimal",
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"identifier": [
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{
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"system": "https://www.christie.nhs.uk/ehr",
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"value": "Consent123456"
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}
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],
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"status": "active",
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"scope": {
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"coding": [
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{
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"system": "http://terminology.hl7.org/CodeSystem/consentscope",
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"code": "research",
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"display": "Research"
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}
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]
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},
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"category": [
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{
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"coding": [
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{
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"system": "http://terminology.hl7.org/CodeSystem/consentcategorycodes",
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"code": "rsdid",
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"display": "De-identified Information Access"
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}
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]
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}
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],
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"patient": {
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "9999999999"
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}
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},
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"dateTime": "2022-07-11T09:00:00Z",
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"performer": [
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{
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "9999999999"
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}
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}
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],
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"organization": [
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{
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/ods-organization-code",
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"value": "RBV"
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}
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}
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],
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"sourceAttachment": {
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"contentType": "application/pdf",
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"language": "en-GB",
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"url": "https://files.genomicsengland.co.uk/forms/Participant-consent-form-for-patients-with-cancer-or-suspected-cancer-C1.pdf",
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"size": 539588,
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"title" : "Participant-consent-form-for-patients-with-cancer-or-suspected-cancer-C1_MJ",
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"creation": "2022-07-11T09:00:00Z"
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},
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"policy": [
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{
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"uri": "https://www.england.nhs.uk/wp-content/uploads/2021/09/nhs-genomic-medicine-service-record-of-discussion-form.pdf"
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}
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],
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"verification": [
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{
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"verified": true
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}
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]
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}

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